RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W MTR4P47047 1073 aaKnown RBP4.53□□□□□ -1.68
LCB5YLR260W NNF1P47149 201 aa4.53□□□□□ -1.68
LCB5YLR260W CTH1P47976 325 aa4.53□□□□□ -1.68
LCB5YLR260W ISM1P48526 1002 aa4.53□□□□□ -1.68
LCB5YLR260W ELP4Q02884 456 aaKnown RBP4.53□□□□□ -1.68
LCB5YLR260W ERF2Q06551 359 aa4.53□□□□□ -1.68
LCB5YLR260W SLY41P22215 453 aa4.52□□□□□ -1.69
LCB5YLR260W NAB3P38996 802 aaKnown RBP RIP-Chip data4.52□□□□□ -1.69not detected
LCB5YLR260W ZDS1P50111 915 aaKnown RBP4.52□□□□□ -1.69
LCB5YLR260W RNH70P53331 553 aa4.52□□□□□ -1.69
LCB5YLR260W YRF1-4O13559 1382 aa4.52□□□□□ -1.69
LCB5YLR260W COBP00163 385 aa4.52□□□□□ -1.69
LCB5YLR260W SPT23P35210 1082 aa4.52□□□□□ -1.69
LCB5YLR260W TTI1P36097 1038 aa4.52□□□□□ -1.69
LCB5YLR260W AUS1Q08409 1394 aa4.51□□□□□ -1.69
LCB5YLR260W NPL4P33755 580 aa4.51□□□□□ -1.69
LCB5YLR260W YKL133CP36066 463 aa4.51□□□□□ -1.69
LCB5YLR260W RPL34BP40525 121 aaKnown RBP4.51□□□□□ -1.69
LCB5YLR260W TY1A-DR4O74302 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-HP0C2I4 478 aaKnown RBP4.5□□□□□ -1.69
LCB5YLR260W TY1A-AP0CX57 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-PR1P0CX58 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-ORP0CX59 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-PR2P0CX60 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-DR5P0CX65 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-ER2P0CX66 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-GR3P0CX67 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-LR1P0CX68 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-MR2P0CX69 440 aa4.5□□□□□ -1.69
LCB5YLR260W UBP1P25037 809 aa4.5□□□□□ -1.69
LCB5YLR260W PRE3P38624 215 aa4.5□□□□□ -1.69
LCB5YLR260W RSC30P38781 883 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-JR2P47099 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-DR1Q03856 440 aa4.5□□□□□ -1.69
LCB5YLR260W YML083CQ04526 418 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-ML1Q04706 440 aaKnown RBP4.5□□□□□ -1.69
LCB5YLR260W TY1A-BRQ12217 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-NL2Q12470 440 aa4.5□□□□□ -1.69
LCB5YLR260W TY1A-GR2Q12485 440 aa4.5□□□□□ -1.69
LCB5YLR260W YPR015CQ12531 247 aa4.5□□□□□ -1.69
LCB5YLR260W ARG8P18544 423 aa4.5□□□□□ -1.69
LCB5YLR260W YBL036CP38197 257 aa4.5□□□□□ -1.69
LCB5YLR260W PTC2P39966 464 aaKnown RBP4.5□□□□□ -1.69
LCB5YLR260W YPR204WQ08995 1032 aa4.5□□□□□ -1.69
LCB5YLR260W SEC2P17065 759 aa4.49□□□□□ -1.69
LCB5YLR260W TSR4P25040 408 aa4.49□□□□□ -1.69
LCB5YLR260W BIO2P32451 375 aa4.49□□□□□ -1.69
LCB5YLR260W BUD20Q08004 166 aaPredicted RBP4.49□□□□□ -1.69
LCB5YLR260W GAS4Q08271 471 aa4.49□□□□□ -1.69
LCB5YLR260W DPS1P04802 557 aaKnown RBP4.49□□□□□ -1.69
LCB5YLR260W TRM1P15565 570 aaKnown RBP4.49□□□□□ -1.69
LCB5YLR260W PMC1P38929 1173 aaPredicted RBP4.48□□□□□ -1.69
LCB5YLR260W ADE16P54113 591 aaKnown RBP4.48□□□□□ -1.69
LCB5YLR260W FRK1Q03002 865 aaPredicted RBP4.48□□□□□ -1.69
LCB5YLR260W AGE1Q04412 482 aa4.48□□□□□ -1.69
LCB5YLR260W YML082WQ04533 649 aaKnown RBP4.48□□□□□ -1.69
LCB5YLR260W CHL1P22516 861 aaPredicted RBP4.47□□□□□ -1.69
LCB5YLR260W GCD11P32481 527 aaKnown RBP4.47□□□□□ -1.69
LCB5YLR260W RTG2P32608 588 aaKnown RBP4.47□□□□□ -1.69
LCB5YLR260W BUB1P41695 1021 aaKnown RBP RIP-Chip data4.47□□□□□ -1.69not detected
LCB5YLR260W HIM1Q06674 414 aa4.47□□□□□ -1.69
LCB5YLR260W SIR4P11978 1358 aa4.47□□□□□ -1.69
LCB5YLR260W EDE1P34216 1381 aa4.47□□□□□ -1.69
LCB5YLR260W YEF3P16521 1044 aaKnown RBP4.47□□□□□ -1.69
LCB5YLR260W PUP1P25043 261 aa4.47□□□□□ -1.69
LCB5YLR260W PPG1P32838 368 aa4.47□□□□□ -1.69
LCB5YLR260W RRD1P40454 393 aaKnown RBP4.47□□□□□ -1.69
LCB5YLR260W PUS6P53294 404 aa4.47□□□□□ -1.69
LCB5YLR260W RRP15Q06511 250 aaPredicted RBP4.47□□□□□ -1.69
LCB5YLR260W YOL098CQ12496 1037 aa4.47□□□□□ -1.69
LCB5YLR260W RPO41P13433 1351 aaKnown RBP4.46□□□□□ -1.7
LCB5YLR260W BCK2P33306 851 aa4.46□□□□□ -1.7
LCB5YLR260W RRP14P36080 434 aaKnown RBP4.46□□□□□ -1.7
LCB5YLR260W STM1P39015 273 aaKnown RBP4.46□□□□□ -1.7
LCB5YLR260W TUB4P53378 473 aa4.46□□□□□ -1.7
LCB5YLR260W MAK16P10962 306 aaPredicted RBP4.45□□□□□ -1.7
LCB5YLR260W TOA1P32773 286 aa4.45□□□□□ -1.7
LCB5YLR260W AIM21P40563 679 aa4.45□□□□□ -1.7
LCB5YLR260W RPS0BP46654 252 aaKnown RBP4.45□□□□□ -1.7
LCB5YLR260W YJL181WP46987 611 aa4.45□□□□□ -1.7
LCB5YLR260W ATE1P16639 503 aa4.45□□□□□ -1.7
LCB5YLR260W SEC20P28791 383 aa4.45□□□□□ -1.7
LCB5YLR260W PRP40P33203 583 aaKnown RBP4.45□□□□□ -1.7
LCB5YLR260W UGA2P38067 497 aa4.45□□□□□ -1.7
LCB5YLR260W ENP1P38333 483 aaKnown RBP4.45□□□□□ -1.7
LCB5YLR260W TBF1Q02457 562 aa4.45□□□□□ -1.7
LCB5YLR260W PRT1P06103 763 aaKnown RBP4.44□□□□□ -1.7
LCB5YLR260W ISW1P38144 1129 aa4.44□□□□□ -1.7
LCB5YLR260W FPR3P38911 411 aaKnown RBP4.44□□□□□ -1.7
LCB5YLR260W TPM2P40414 161 aa4.44□□□□□ -1.7
LCB5YLR260W SVF1Q05515 481 aa4.44□□□□□ -1.7
LCB5YLR260W MAG2Q06436 670 aaKnown RBP4.44□□□□□ -1.7
LCB5YLR260W BRE1Q07457 700 aaKnown RBP4.44□□□□□ -1.7
LCB5YLR260W GAL11P19659 1081 aa4.44□□□□□ -1.7
LCB5YLR260W RPA135P22138 1203 aaKnown RBP4.44□□□□□ -1.7
LCB5YLR260W YNL108CP53929 270 aa4.44□□□□□ -1.7
LCB5YLR260W YOL057WQ08225 711 aa4.44□□□□□ -1.7
LCB5YLR260W YDL206WQ12424 762 aa4.44□□□□□ -1.7
LCB5YLR260W SSB1P11484 613 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W PDI1P17967 522 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms