RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	RPS27A	P35997	82 aa	Known RBP	-0.98	□□□□□ -2.57
UBS1	YBR165W	SIP18	P50263	79 aa		-0.98	□□□□□ -2.57
UBS1	YBR165W	FYV7	Q12247	151 aa		-0.98	□□□□□ -2.57
UBS1	YBR165W	MHF2	Q3E829	80 aa		-0.98	□□□□□ -2.57
UBS1	YBR165W	NOP10	Q6Q547	58 aa	Predicted RBP	-0.98	□□□□□ -2.57
UBS1	YBR165W	YDR042C	Q03205	200 aa		-0.99	□□□□□ -2.57
UBS1	YBR165W	GEA2	P39993	1459 aa	Known RBP	-0.99	□□□□□ -2.57
UBS1	YBR165W	POC4	Q12245	148 aa	Predicted RBP	-1	□□□□□ -2.57
UBS1	YBR165W	SUS1	Q6WNK7	96 aa		-1	□□□□□ -2.57
UBS1	YBR165W	MSL1	P40567	111 aa	Predicted RBP	-1.01	□□□□□ -2.57
UBS1	YBR165W	SCP1	Q08873	200 aa		-1.01	□□□□□ -2.57
UBS1	YBR165W	SWR1	Q05471	1514 aa		-1.02	□□□□□ -2.57
UBS1	YBR165W	YIL156W-B	Q2V2P4	73 aa		-1.02	□□□□□ -2.57
UBS1	YBR165W	MDS3	P53094	1487 aa		-1.03	□□□□□ -2.57
UBS1	YBR165W	LSM2	P38203	95 aa	Known RBP	-1.03	□□□□□ -2.57
UBS1	YBR165W	OLI1	P61829	76 aa		-1.03	□□□□□ -2.57
UBS1	YBR165W	SMC4	Q12267	1418 aa		-1.04	□□□□□ -2.58
UBS1	YBR165W	RPO21	P04050	1733 aa	Known RBP	-1.06	□□□□□ -2.58
UBS1	YBR165W	APC1	P53886	1748 aa		-1.06	□□□□□ -2.58
UBS1	YBR165W	YOR343C	Q12484	108 aa		-1.06	□□□□□ -2.58
UBS1	YBR165W	YBR200W-A	Q3E755	54 aa		-1.06	□□□□□ -2.58
UBS1	YBR165W	YOR394C-A	Q8TGJ0	55 aa		-1.06	□□□□□ -2.58
UBS1	YBR165W	IRC20	Q06554	1556 aa		-1.06	□□□□□ -2.58
UBS1	YBR165W	YDL022C-A	P0C5L6	82 aa		-1.07	□□□□□ -2.58
UBS1	YBR165W	YLR146W-A	Q2V2P1	62 aa		-1.07	□□□□□ -2.58
UBS1	YBR165W	YOR105W	Q08504	108 aa		-1.08	□□□□□ -2.58
UBS1	YBR165W	YOR011W-A	Q3E807	68 aa		-1.09	□□□□□ -2.58
UBS1	YBR165W	YMR175W-A	Q3E766	64 aa		-1.1	□□□□□ -2.59
UBS1	YBR165W	ATP17	Q06405	101 aa		-1.11	□□□□□ -2.59
UBS1	YBR165W	SIN3	P22579	1536 aa		-1.11	□□□□□ -2.59
UBS1	YBR165W	YKL065W-A	Q2V2P2	73 aa		-1.12	□□□□□ -2.59
UBS1	YBR165W	YDR524C-B	Q3E6R4	66 aa		-1.12	□□□□□ -2.59
UBS1	YBR165W	YLL006W-A	Q3E814	58 aa		-1.12	□□□□□ -2.59
UBS1	YBR165W	YBL039W-B	P0C268	59 aa		-1.13	□□□□□ -2.59
UBS1	YBR165W	YMR082C	Q04276	118 aa		-1.13	□□□□□ -2.59
UBS1	YBR165W	YOR314W	Q12506	109 aa		-1.13	□□□□□ -2.59
UBS1	YBR165W	KOG1	P38873	1557 aa		-1.13	□□□□□ -2.59
UBS1	YBR165W	TY3B-G	Q99315	1547 aa		-1.14	□□□□□ -2.59
UBS1	YBR165W	RPS27B	P38711	82 aa		-1.14	□□□□□ -2.59
UBS1	YBR165W	COA2	Q3E823	68 aa		-1.14	□□□□□ -2.59
UBS1	YBR165W	YPL225W	Q08971	146 aa	Known RBP	-1.15	□□□□□ -2.59
UBS1	YBR165W	YCL001W-B	Q96VH2	84 aa		-1.15	□□□□□ -2.59
UBS1	YBR165W	YDR119W-A	Q2V2P9	66 aa		-1.16	□□□□□ -2.6
UBS1	YBR165W	YGL258W-A	Q3E740	77 aa		-1.16	□□□□□ -2.6
UBS1	YBR165W	YPR145C-A	Q2V2P0	78 aa		-1.17	□□□□□ -2.6
UBS1	YBR165W	HAP1	P0CE41	1502 aa		-1.17	□□□□□ -2.6
UBS1	YBR165W	ESC1	Q03661	1658 aa	Known RBP	-1.18	□□□□□ -2.6
UBS1	YBR165W	YGR121W-A	Q3E816	71 aa		-1.18	□□□□□ -2.6
UBS1	YBR165W	YOR032W-A	Q8TGS1	66 aa		-1.18	□□□□□ -2.6
UBS1	YBR165W	QCR9	P22289	66 aa		-1.19	□□□□□ -2.6
UBS1	YBR165W	ZEO1	Q08245	113 aa		-1.19	□□□□□ -2.6
UBS1	YBR165W	YCR075W-A	Q3E830	75 aa		-1.19	□□□□□ -2.6
UBS1	YBR165W	YGR035W-A	Q45U48	73 aa		-1.19	□□□□□ -2.6
UBS1	YBR165W	YGR146C-A	Q8TGT9	53 aa		-1.19	□□□□□ -2.6
UBS1	YBR165W	YSP2	Q06681	1438 aa		-1.2	□□□□□ -2.6
UBS1	YBR165W	CSF1	Q12150	2958 aa		-1.2	□□□□□ -2.6
UBS1	YBR165W	SWM2	P40342	146 aa		-1.21	□□□□□ -2.6
UBS1	YBR165W	MLP1	Q02455	1875 aa	Known RBP	-1.21	□□□□□ -2.6
UBS1	YBR165W	VPS15	P22219	1454 aa		-1.23	□□□□□ -2.61
UBS1	YBR165W	FKS3	Q04952	1785 aa		-1.23	□□□□□ -2.61
UBS1	YBR165W	PAU7	P39545	55 aa		-1.23	□□□□□ -2.61
UBS1	YBR165W	MMS22	Q06164	1454 aa		-1.24	□□□□□ -2.61
UBS1	YBR165W	CWP2	P43497	92 aa		-1.24	□□□□□ -2.61
UBS1	YBR165W	YBR230W-A	Q3E762	66 aa		-1.24	□□□□□ -2.61
UBS1	YBR165W	YOR072W-B	Q3E832	53 aa		-1.24	□□□□□ -2.61
UBS1	YBR165W	NUM1	Q00402	2748 aa		-1.25	□□□□□ -2.61
UBS1	YBR165W	SSS1	P35179	80 aa		-1.25	□□□□□ -2.61
UBS1	YBR165W	HUB1	Q6Q546	73 aa		-1.26	□□□□□ -2.61
UBS1	YBR165W	LTE1	P07866	1435 aa		-1.27	□□□□□ -2.61
UBS1	YBR165W	TIM12	P32830	109 aa		-1.28	□□□□□ -2.61
UBS1	YBR165W	SPI1	P40092	148 aa		-1.28	□□□□□ -2.61
UBS1	YBR165W	YGL194C-A	Q2V2P6	80 aa		-1.28	□□□□□ -2.61
UBS1	YBR165W	ARO1	P08566	1588 aa	Known RBP	-1.3	□□□□□ -2.62
UBS1	YBR165W	ESP1	Q03018	1630 aa		-1.32	□□□□□ -2.62
UBS1	YBR165W	ERI1	P62651	68 aa	Known RBP	-1.32	□□□□□ -2.62
UBS1	YBR165W	TRA1	P38811	3744 aa		-1.32	□□□□□ -2.62
UBS1	YBR165W	Q0017	Q9ZZX8	53 aa		-1.33	□□□□□ -2.62
UBS1	YBR165W	FIG2	P25653	1609 aa		-1.33	□□□□□ -2.62
UBS1	YBR165W	CUP1-1	P0CX80	61 aa		-1.34	□□□□□ -2.62
UBS1	YBR165W	CUP1-2	P0CX81	61 aa		-1.34	□□□□□ -2.62
UBS1	YBR165W	RPS30A	P0CX33	63 aa	Known RBP	-1.36	□□□□□ -2.63
UBS1	YBR165W	RPS30B	P0CX34	63 aa	Known RBP	-1.36	□□□□□ -2.63
UBS1	YBR165W	DNF1	P32660	1571 aa		-1.37	□□□□□ -2.63
UBS1	YBR165W	YOR192C-C	Q3E736	78 aa		-1.37	□□□□□ -2.63
UBS1	YBR165W	IRA1	P18963	3092 aa		-1.38	□□□□□ -2.63
UBS1	YBR165W	PDR12	Q02785	1511 aa		-1.38	□□□□□ -2.63
UBS1	YBR165W	YLR157W-D	P0CE99	70 aa		-1.38	□□□□□ -2.63
UBS1	YBR165W	RRP5	Q05022	1729 aa	Known RBP	-1.38	□□□□□ -2.63
UBS1	YBR165W	IQG1	Q12280	1495 aa		-1.38	□□□□□ -2.63
UBS1	YBR165W	DNF2	Q12675	1612 aa		-1.39	□□□□□ -2.63
UBS1	YBR165W	THO2	P53552	1597 aa	Known RBP	-1.39	□□□□□ -2.63
UBS1	YBR165W	IRA2	P19158	3079 aa		-1.4	□□□□□ -2.63
UBS1	YBR165W	YOL131W	Q08270	108 aa		-1.4	□□□□□ -2.63
UBS1	YBR165W	SNQ2	P32568	1501 aa	Known RBP	-1.4	□□□□□ -2.63
UBS1	YBR165W	UFD4	P33202	1483 aa		-1.42	□□□□□ -2.64
UBS1	YBR165W	YOL166W-A	Q8TGJ1	51 aa		-1.42	□□□□□ -2.64
UBS1	YBR165W	PDR15	Q04182	1529 aa	Known RBP	-1.43	□□□□□ -2.64
UBS1	YBR165W	IML1	P47170	1584 aa		-1.43	□□□□□ -2.64
UBS1	YBR165W	YML054C-A	Q3E809	52 aa		-1.44	□□□□□ -2.64
UBS1	YBR165W	BCK1	Q01389	1478 aa		-1.44	□□□□□ -2.64

Retrieved 100 of 5,963 RNA–protein pairs in 55.7 ms