RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	RPB7	P34087	171 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	MED8	P38304	223 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	YHR138C	P38841	114 aa	Predicted RBP	2.98	□□□□□ -1.93
SSL1	YLR005W	YJR011C	P47086	261 aa	Predicted RBP	2.98	□□□□□ -1.93
SSL1	YLR005W	SLX9	P53251	210 aa	Predicted RBP	2.98	□□□□□ -1.93
SSL1	YLR005W	CRH1	P53301	507 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	GIM3	P53900	129 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	YDR274C	P87283	123 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	CAB5	Q03941	241 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	GPN3	Q06543	272 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	MED4	Q12343	284 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	MET17	P06106	444 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	ROX3	P25046	220 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	YCR043C	P25361	127 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	LAC1	P28496	418 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	MRPL49	P40858	161 aa	Predicted RBP	2.97	□□□□□ -1.93
SSL1	YLR005W	PAM16	P42949	149 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	SRB7	P47822	140 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	FMP48	P53233	369 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	VBA1	Q04301	562 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	HRD1	Q08109	551 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	YOL118C	Q08259	102 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	TIR4	Q12218	487 aa	Predicted RBP	2.97	□□□□□ -1.93
SSL1	YLR005W	BOL1	Q3E793	110 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	YPR108W-A	Q3E7B3	70 aa		2.97	□□□□□ -1.93
SSL1	YLR005W	VPS63	O13549	108 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	YBR085C-A	O43137	85 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	HTB1	P02293	131 aa	Known RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	HIS3	P06633	220 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	VMA8	P32610	256 aa	Known RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	ALK2	P32789	676 aa	Predicted RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	FMP23	P38231	175 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	MIC12	P38341	106 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	GOS1	P38736	223 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	WWM1	P43582	211 aa	Known RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	YPI1	P43587	155 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	RPA34	P47006	233 aa	Predicted RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	RBL2	P48606	106 aa	Known RBP	2.96	□□□□□ -1.94
SSL1	YLR005W	YGR042W	P53227	271 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	VHT1	P53241	593 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	MAK3	Q03503	176 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	YFH1	Q07540	174 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	RAD28	Q12021	506 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	ODC2	Q99297	307 aa		2.96	□□□□□ -1.94
SSL1	YLR005W	MRPL38	P35996	138 aa	Predicted RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	PCL6	P40038	420 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	PDS1	P40316	373 aa	Predicted RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	AIM20	P40451	204 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	YJL218W	P40892	196 aa	Known RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	ATG18	P43601	500 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	YGR219W	P53307	113 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	SSU72	P53538	206 aa	Predicted RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	YDR415C	Q04033	374 aa	Predicted RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	PEX10	Q05568	337 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	RRG8	Q06109	277 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	PBP4	Q07362	185 aa	Known RBP	2.95	□□□□□ -1.94
SSL1	YLR005W	AEP3	Q12089	606 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	INP53	Q12271	1107 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	UBA3	Q99344	299 aa		2.95	□□□□□ -1.94
SSL1	YLR005W	RPL42A	P0CX27	106 aa	Known RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	RPL42B	P0CX28	106 aa	Known RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	RPS18A	P0CX55	146 aa	Known RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	RPS18B	P0CX56	146 aa	Predicted RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	SRL3	P36167	246 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	SYG1	P40528	902 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	YFR035C	P43608	114 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	UBP8	P50102	471 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	CPD1	P53314	239 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	CWC25	P53854	179 aa	Known RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	ERV25	P54837	211 aa	Known RBP	2.94	□□□□□ -1.94
SSL1	YLR005W	BUD25	P85052	153 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	MEH1	Q02205	184 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	ATG41	Q12048	136 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	ATG31	Q12421	196 aa		2.94	□□□□□ -1.94
SSL1	YLR005W	PET494	P07390	489 aa	Predicted RBP	2.93	□□□□□ -1.94
SSL1	YLR005W	CDC23	P16522	626 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	SEN2	P16658	377 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	YKR045C	P36138	183 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	ATP3	P38077	311 aa	Known RBP	2.93	□□□□□ -1.94
SSL1	YLR005W	LAG1	P38703	411 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	POP2	P39008	433 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	YGR210C	P42942	411 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	OTU1	P43558	301 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	AGX1	P43567	385 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	LSM1	P47017	172 aa	Known RBP	2.93	□□□□□ -1.94
SSL1	YLR005W	ERV29	P53337	310 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	2.93	□□□□□ -1.94	not detected
SSL1	YLR005W	YML018C	Q03730	393 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	SUS1	Q6WNK7	96 aa		2.93	□□□□□ -1.94
SSL1	YLR005W	NOP1	P15646	327 aa	Known RBP	2.92	□□□□□ -1.94
SSL1	YLR005W	HOM6	P31116	359 aa	Known RBP	2.92	□□□□□ -1.94
SSL1	YLR005W	YPS1	P32329	569 aa		2.92	□□□□□ -1.94
SSL1	YLR005W	AGA2	P32781	87 aa		2.92	□□□□□ -1.94
SSL1	YLR005W	ECM33	P38248	429 aa	Known RBP	2.92	□□□□□ -1.94
SSL1	YLR005W	RTC3	P38804	111 aa	Predicted RBP	2.92	□□□□□ -1.94
SSL1	YLR005W	LSM12	P38828	187 aa	Known RBP	2.92	□□□□□ -1.94
SSL1	YLR005W	YIL060W	P40519	144 aa		2.92	□□□□□ -1.94
SSL1	YLR005W	LST8	P41318	303 aa		2.92	□□□□□ -1.94
SSL1	YLR005W	ALG13	P53178	202 aa		2.92	□□□□□ -1.94
SSL1	YLR005W	FSH2	Q05015	223 aa		2.92	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms