RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W RPB7P34087 171 aa2.98□□□□□ -1.93
SSL1YLR005W MED8P38304 223 aa2.98□□□□□ -1.93
SSL1YLR005W YHR138CP38841 114 aaPredicted RBP2.98□□□□□ -1.93
SSL1YLR005W YJR011CP47086 261 aaPredicted RBP2.98□□□□□ -1.93
SSL1YLR005W SLX9P53251 210 aaPredicted RBP2.98□□□□□ -1.93
SSL1YLR005W CRH1P53301 507 aa2.98□□□□□ -1.93
SSL1YLR005W GIM3P53900 129 aa2.98□□□□□ -1.93
SSL1YLR005W YDR274CP87283 123 aa2.98□□□□□ -1.93
SSL1YLR005W CAB5Q03941 241 aa2.98□□□□□ -1.93
SSL1YLR005W GPN3Q06543 272 aa2.98□□□□□ -1.93
SSL1YLR005W MED4Q12343 284 aa2.98□□□□□ -1.93
SSL1YLR005W MET17P06106 444 aa2.97□□□□□ -1.93
SSL1YLR005W ROX3P25046 220 aa2.97□□□□□ -1.93
SSL1YLR005W YCR043CP25361 127 aa2.97□□□□□ -1.93
SSL1YLR005W LAC1P28496 418 aa2.97□□□□□ -1.93
SSL1YLR005W MRPL49P40858 161 aaPredicted RBP2.97□□□□□ -1.93
SSL1YLR005W PAM16P42949 149 aa2.97□□□□□ -1.93
SSL1YLR005W SRB7P47822 140 aa2.97□□□□□ -1.93
SSL1YLR005W FMP48P53233 369 aa2.97□□□□□ -1.93
SSL1YLR005W VBA1Q04301 562 aa2.97□□□□□ -1.93
SSL1YLR005W HRD1Q08109 551 aa2.97□□□□□ -1.93
SSL1YLR005W YOL118CQ08259 102 aa2.97□□□□□ -1.93
SSL1YLR005W TIR4Q12218 487 aaPredicted RBP2.97□□□□□ -1.93
SSL1YLR005W BOL1Q3E793 110 aa2.97□□□□□ -1.93
SSL1YLR005W YPR108W-AQ3E7B3 70 aa2.97□□□□□ -1.93
SSL1YLR005W VPS63O13549 108 aa2.96□□□□□ -1.94
SSL1YLR005W YBR085C-AO43137 85 aa2.96□□□□□ -1.94
SSL1YLR005W HTB1P02293 131 aaKnown RBP2.96□□□□□ -1.94
SSL1YLR005W HIS3P06633 220 aa2.96□□□□□ -1.94
SSL1YLR005W VMA8P32610 256 aaKnown RBP2.96□□□□□ -1.94
SSL1YLR005W ALK2P32789 676 aaPredicted RBP2.96□□□□□ -1.94
SSL1YLR005W FMP23P38231 175 aa2.96□□□□□ -1.94
SSL1YLR005W MIC12P38341 106 aa2.96□□□□□ -1.94
SSL1YLR005W GOS1P38736 223 aa2.96□□□□□ -1.94
SSL1YLR005W WWM1P43582 211 aaKnown RBP2.96□□□□□ -1.94
SSL1YLR005W YPI1P43587 155 aa2.96□□□□□ -1.94
SSL1YLR005W RPA34P47006 233 aaPredicted RBP2.96□□□□□ -1.94
SSL1YLR005W RBL2P48606 106 aaKnown RBP2.96□□□□□ -1.94
SSL1YLR005W YGR042WP53227 271 aa2.96□□□□□ -1.94
SSL1YLR005W VHT1P53241 593 aa2.96□□□□□ -1.94
SSL1YLR005W MAK3Q03503 176 aa2.96□□□□□ -1.94
SSL1YLR005W YFH1Q07540 174 aa2.96□□□□□ -1.94
SSL1YLR005W RAD28Q12021 506 aa2.96□□□□□ -1.94
SSL1YLR005W ODC2Q99297 307 aa2.96□□□□□ -1.94
SSL1YLR005W MRPL38P35996 138 aaPredicted RBP2.95□□□□□ -1.94
SSL1YLR005W PCL6P40038 420 aa2.95□□□□□ -1.94
SSL1YLR005W PDS1P40316 373 aaPredicted RBP2.95□□□□□ -1.94
SSL1YLR005W AIM20P40451 204 aa2.95□□□□□ -1.94
SSL1YLR005W YJL218WP40892 196 aaKnown RBP2.95□□□□□ -1.94
SSL1YLR005W ATG18P43601 500 aa2.95□□□□□ -1.94
SSL1YLR005W YGR219WP53307 113 aa2.95□□□□□ -1.94
SSL1YLR005W SSU72P53538 206 aaPredicted RBP2.95□□□□□ -1.94
SSL1YLR005W YDR415CQ04033 374 aaPredicted RBP2.95□□□□□ -1.94
SSL1YLR005W PEX10Q05568 337 aa2.95□□□□□ -1.94
SSL1YLR005W RRG8Q06109 277 aa2.95□□□□□ -1.94
SSL1YLR005W PBP4Q07362 185 aaKnown RBP2.95□□□□□ -1.94
SSL1YLR005W AEP3Q12089 606 aa2.95□□□□□ -1.94
SSL1YLR005W INP53Q12271 1107 aa2.95□□□□□ -1.94
SSL1YLR005W UBA3Q99344 299 aa2.95□□□□□ -1.94
SSL1YLR005W RPL42AP0CX27 106 aaKnown RBP2.94□□□□□ -1.94
SSL1YLR005W RPL42BP0CX28 106 aaKnown RBP2.94□□□□□ -1.94
SSL1YLR005W RPS18AP0CX55 146 aaKnown RBP2.94□□□□□ -1.94
SSL1YLR005W RPS18BP0CX56 146 aaPredicted RBP2.94□□□□□ -1.94
SSL1YLR005W SRL3P36167 246 aa2.94□□□□□ -1.94
SSL1YLR005W SYG1P40528 902 aa2.94□□□□□ -1.94
SSL1YLR005W YFR035CP43608 114 aa2.94□□□□□ -1.94
SSL1YLR005W UBP8P50102 471 aa2.94□□□□□ -1.94
SSL1YLR005W CPD1P53314 239 aa2.94□□□□□ -1.94
SSL1YLR005W CWC25P53854 179 aaKnown RBP2.94□□□□□ -1.94
SSL1YLR005W ERV25P54837 211 aaKnown RBP2.94□□□□□ -1.94
SSL1YLR005W BUD25P85052 153 aa2.94□□□□□ -1.94
SSL1YLR005W MEH1Q02205 184 aa2.94□□□□□ -1.94
SSL1YLR005W ATG41Q12048 136 aa2.94□□□□□ -1.94
SSL1YLR005W ATG31Q12421 196 aa2.94□□□□□ -1.94
SSL1YLR005W PET494P07390 489 aaPredicted RBP2.93□□□□□ -1.94
SSL1YLR005W CDC23P16522 626 aa2.93□□□□□ -1.94
SSL1YLR005W SEN2P16658 377 aa2.93□□□□□ -1.94
SSL1YLR005W YKR045CP36138 183 aa2.93□□□□□ -1.94
SSL1YLR005W ATP3P38077 311 aaKnown RBP2.93□□□□□ -1.94
SSL1YLR005W LAG1P38703 411 aa2.93□□□□□ -1.94
SSL1YLR005W POP2P39008 433 aa2.93□□□□□ -1.94
SSL1YLR005W YGR210CP42942 411 aa2.93□□□□□ -1.94
SSL1YLR005W OTU1P43558 301 aa2.93□□□□□ -1.94
SSL1YLR005W AGX1P43567 385 aa2.93□□□□□ -1.94
SSL1YLR005W LSM1P47017 172 aaKnown RBP2.93□□□□□ -1.94
SSL1YLR005W ERV29P53337 310 aa2.93□□□□□ -1.94
SSL1YLR005W GIS2P53849 153 aaKnown RBP RIP-Chip data2.93□□□□□ -1.94not detected
SSL1YLR005W YML018CQ03730 393 aa2.93□□□□□ -1.94
SSL1YLR005W SUS1Q6WNK7 96 aa2.93□□□□□ -1.94
SSL1YLR005W NOP1P15646 327 aaKnown RBP2.92□□□□□ -1.94
SSL1YLR005W HOM6P31116 359 aaKnown RBP2.92□□□□□ -1.94
SSL1YLR005W YPS1P32329 569 aa2.92□□□□□ -1.94
SSL1YLR005W AGA2P32781 87 aa2.92□□□□□ -1.94
SSL1YLR005W ECM33P38248 429 aaKnown RBP2.92□□□□□ -1.94
SSL1YLR005W RTC3P38804 111 aaPredicted RBP2.92□□□□□ -1.94
SSL1YLR005W LSM12P38828 187 aaKnown RBP2.92□□□□□ -1.94
SSL1YLR005W YIL060WP40519 144 aa2.92□□□□□ -1.94
SSL1YLR005W LST8P41318 303 aa2.92□□□□□ -1.94
SSL1YLR005W ALG13P53178 202 aa2.92□□□□□ -1.94
SSL1YLR005W FSH2Q05015 223 aa2.92□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 45.1 ms