Protein–RNA interactions for Protein: P47017

LSM1, Sm-like protein LSm1, yeastyeast

Known RBP Predictions only

Length 172 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM1P47017 NSR1YGR159C 1245 nt17.35■□□□□ 0.37
LSM1P47017 YML009W-BYML009W-B 477 nt17.09■□□□□ 0.33
LSM1P47017 NOP1YDL014W 984 nt16.46■□□□□ 0.23
LSM1P47017 MDJ1YFL016C 1536 nt15.84■□□□□ 0.13
LSM1P47017 YKL036CYKL036C 393 nt14.7□□□□□ -0.06
LSM1P47017 YJL027CYJL027C 417 nt14.63□□□□□ -0.07
LSM1P47017 SRX1YKL086W 384 nt14.31□□□□□ -0.12
LSM1P47017 Q0297Q0297 156 nt14.16□□□□□ -0.14
LSM1P47017 SSA3YBL075C 1950 nt14.13□□□□□ -0.15
LSM1P47017 DBP2YNL112W 1641 nt13.73□□□□□ -0.21
LSM1P47017 YBR190WYBR190W 312 nt13.65□□□□□ -0.22
LSM1P47017 YCR051WYCR051W 669 nt13.59□□□□□ -0.23
LSM1P47017 RTC3YHR087W 336 nt13.37□□□□□ -0.27
LSM1P47017 TRN1tP(UGG)A 72 nt13.2□□□□□ -0.3
LSM1P47017 SUF9tP(UGG)F 72 nt13.2□□□□□ -0.3
LSM1P47017 SUF8tP(UGG)H 72 nt13.2□□□□□ -0.3
LSM1P47017 tP(UGG)LtP(UGG)L 72 nt13.2□□□□□ -0.3
LSM1P47017 SUF7tP(UGG)M 72 nt13.2□□□□□ -0.3
LSM1P47017 tP(UGG)N1tP(UGG)N1 72 nt13.2□□□□□ -0.3
LSM1P47017 tP(UGG)N2tP(UGG)N2 72 nt13.2□□□□□ -0.3
LSM1P47017 tP(UGG)O1tP(UGG)O1 72 nt13.2□□□□□ -0.3
LSM1P47017 SUF11tP(UGG)O2 72 nt13.2□□□□□ -0.3
LSM1P47017 CCC1YLR220W 969 nt13.1□□□□□ -0.31
LSM1P47017 SCS3YGL126W 1143 nt13.09□□□□□ -0.31
LSM1P47017 RVS167YDR388W 1449 nt12.99□□□□□ -0.33
LSM1P47017 PUT4YOR348C 1884 nt12.78□□□□□ -0.36
LSM1P47017 RPP1BYDL130W 321 nt12.73□□□□□ -0.37
LSM1P47017 YOL085CYOL085C 342 nt12.7□□□□□ -0.38
LSM1P47017 SCJ1YMR214W 1134 nt12.69□□□□□ -0.38
LSM1P47017 PKP1YIL042C 1185 nt12.57□□□□□ -0.4
LSM1P47017 SHR5YOL110W 714 nt12.36□□□□□ -0.43
LSM1P47017 tP(UGG)O3tP(UGG)O3 72 nt12.34□□□□□ -0.43
LSM1P47017 POA1YBR022W 534 nt12.33□□□□□ -0.44
LSM1P47017 SSA4YER103W 1929 nt12.33□□□□□ -0.44
LSM1P47017 URN1YPR152C 1398 nt12.3□□□□□ -0.44
LSM1P47017 ARE1YCR048W 1833 nt12.3□□□□□ -0.44
LSM1P47017 SPT5YML010W 3192 nt12.24□□□□□ -0.45
LSM1P47017 BSC6YOL137W 1494 nt12.23□□□□□ -0.45
LSM1P47017 SAH1YER043C 1350 nt12.23□□□□□ -0.45
LSM1P47017 YHR049C-AYHR049C-A 297 nt12.23□□□□□ -0.45
LSM1P47017 PET122YER153C 765 nt12.2□□□□□ -0.46
LSM1P47017 OPI9YLR338W 858 nt12.2□□□□□ -0.46
LSM1P47017 DEP1YAL013W 1218 nt12.16□□□□□ -0.46
LSM1P47017 RPN10YHR200W 807 nt12.11□□□□□ -0.47
LSM1P47017 SCR1SCR1 522 nt12.03□□□□□ -0.48
LSM1P47017 PAC11YDR488C 1602 nt12□□□□□ -0.49
LSM1P47017 YDJ1YNL064C 1230 nt11.96□□□□□ -0.49
LSM1P47017 BUD23YCR047C 828 nt11.94□□□□□ -0.5
LSM1P47017 YNL208WYNL208W 600 nt11.94□□□□□ -0.5
LSM1P47017 BDF1YLR399C 2061 nt11.91□□□□□ -0.5
LSM1P47017 PUN1YLR414C 792 nt11.9□□□□□ -0.5
LSM1P47017 NVJ2YPR091C 2313 nt11.85□□□□□ -0.51
LSM1P47017 RRN5YLR141W 1092 nt11.79□□□□□ -0.52
LSM1P47017 PTC2YER089C 1395 nt11.79□□□□□ -0.52
LSM1P47017 GAR1YHR089C 618 nt11.77□□□□□ -0.53
LSM1P47017 TAT1YBR069C 1860 nt11.74□□□□□ -0.53
LSM1P47017 NAB2YGL122C 1578 nt11.71□□□□□ -0.53
LSM1P47017 YJR018WYJR018W 363 nt11.71□□□□□ -0.53
LSM1P47017 MEP2YNL142W 1500 nt11.58□□□□□ -0.56
LSM1P47017 ATS1YAL020C 1002 nt11.57□□□□□ -0.56
LSM1P47017 YER088W-BYER088W-B 147 nt11.55□□□□□ -0.56
LSM1P47017 FPS1YLL043W 2010 nt11.52□□□□□ -0.56
LSM1P47017 FPR4YLR449W 1179 nt11.48□□□□□ -0.57
LSM1P47017 RSB1YOR049C 1065 nt11.48□□□□□ -0.57
LSM1P47017 DAL1YIR027C 1383 nt11.47□□□□□ -0.57
LSM1P47017 FIS1YIL065C 468 nt11.45□□□□□ -0.58
LSM1P47017 RPP2BYDR382W 333 nt11.43□□□□□ -0.58
LSM1P47017 SSA1YAL005C 1929 nt11.41□□□□□ -0.58
LSM1P47017 TIR1YER011W 765 nt11.39□□□□□ -0.59
LSM1P47017 INM2YDR287W 879 nt11.37□□□□□ -0.59
LSM1P47017 PHO4YFR034C 939 nt11.35□□□□□ -0.59
LSM1P47017 DCW1YKL046C 1350 nt11.33□□□□□ -0.6
LSM1P47017 YJR120WYJR120W 351 nt11.31□□□□□ -0.6
LSM1P47017 YMR090WYMR090W 684 nt11.29□□□□□ -0.6
LSM1P47017 YBR220CYBR220C 1683 nt11.28□□□□□ -0.6
LSM1P47017 YPS1YLR120C 1710 nt11.26□□□□□ -0.61
LSM1P47017 YHR165W-AYHR165W-A 312 nt11.25□□□□□ -0.61
LSM1P47017 EMI2YDR516C 1503 nt11.2□□□□□ -0.62
LSM1P47017 YBL100CYBL100C 315 nt11.18□□□□□ -0.62
LSM1P47017 YDR095CYDR095C 411 nt11.14□□□□□ -0.63
LSM1P47017 PCH2YBR186W 1695 nt11.12□□□□□ -0.63
LSM1P47017 SEC11YIR022W 504 nt11.09□□□□□ -0.63
LSM1P47017 SDH1YKL148C 1923 nt11.07□□□□□ -0.64
LSM1P47017 GUT2YIL155C 1950 nt11.07□□□□□ -0.64
LSM1P47017 YDL221WYDL221W 552 nt11.05□□□□□ -0.64
LSM1P47017 BDH2YAL061W 1254 nt11.04□□□□□ -0.64
LSM1P47017 ALF1YNL148C 765 nt11.04□□□□□ -0.64
LSM1P47017 FUN26YAL022C 1554 nt11.01□□□□□ -0.65
LSM1P47017 YJL225CYJL225C 5277 nt10.98□□□□□ -0.65
LSM1P47017 RPP2AYOL039W 321 nt10.95□□□□□ -0.66
LSM1P47017 TRM9YML014W 840 nt10.94□□□□□ -0.66
LSM1P47017 SRB2YHR041C 633 nt10.93□□□□□ -0.66
LSM1P47017 UME6YDR207C 2511 nt10.91□□□□□ -0.66
LSM1P47017 SCC4YER147C 1875 nt10.87□□□□□ -0.67
LSM1P47017 CAC2YML102W 1407 nt10.85□□□□□ -0.67
LSM1P47017 PTP1YDL230W 1008 nt10.85□□□□□ -0.67
LSM1P47017 SUF2tP(AGG)C 72 nt10.84□□□□□ -0.67
LSM1P47017 SUF10tP(AGG)N 72 nt10.84□□□□□ -0.67
LSM1P47017 LSM3YLR438C-A 270 nt10.81□□□□□ -0.68
LSM1P47017 CCT6YDR188W 1641 nt10.8□□□□□ -0.68
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms