Protein–RNA interactions for Protein: P53538

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, yeastyeast

Predicted RBP Predictions only

Length 206 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSU72P53538 NSR1YGR159C 1245 nt16.56■□□□□ 0.24
SSU72P53538 YML009W-BYML009W-B 477 nt16.42■□□□□ 0.22
SSU72P53538 NOP1YDL014W 984 nt15.97■□□□□ 0.15
SSU72P53538 MDJ1YFL016C 1536 nt14.83□□□□□ -0.04
SSU72P53538 YKL036CYKL036C 393 nt14.44□□□□□ -0.1
SSU72P53538 SRX1YKL086W 384 nt13.87□□□□□ -0.19
SSU72P53538 Q0297Q0297 156 nt13.82□□□□□ -0.2
SSU72P53538 YJL027CYJL027C 417 nt13.77□□□□□ -0.21
SSU72P53538 YCR051WYCR051W 669 nt13.15□□□□□ -0.3
SSU72P53538 SSA3YBL075C 1950 nt13.02□□□□□ -0.32
SSU72P53538 DBP2YNL112W 1641 nt12.98□□□□□ -0.33
SSU72P53538 SCS3YGL126W 1143 nt12.96□□□□□ -0.33
SSU72P53538 YBR190WYBR190W 312 nt12.79□□□□□ -0.36
SSU72P53538 TRN1tP(UGG)A 72 nt12.65□□□□□ -0.38
SSU72P53538 SUF9tP(UGG)F 72 nt12.65□□□□□ -0.38
SSU72P53538 SUF8tP(UGG)H 72 nt12.65□□□□□ -0.38
SSU72P53538 tP(UGG)LtP(UGG)L 72 nt12.65□□□□□ -0.38
SSU72P53538 SUF7tP(UGG)M 72 nt12.65□□□□□ -0.38
SSU72P53538 tP(UGG)N1tP(UGG)N1 72 nt12.65□□□□□ -0.38
SSU72P53538 tP(UGG)N2tP(UGG)N2 72 nt12.65□□□□□ -0.38
SSU72P53538 tP(UGG)O1tP(UGG)O1 72 nt12.65□□□□□ -0.38
SSU72P53538 SUF11tP(UGG)O2 72 nt12.65□□□□□ -0.38
SSU72P53538 CCC1YLR220W 969 nt12.52□□□□□ -0.41
SSU72P53538 RTC3YHR087W 336 nt12.5□□□□□ -0.41
SSU72P53538 YOL085CYOL085C 342 nt12.47□□□□□ -0.41
SSU72P53538 RPP1BYDL130W 321 nt12.4□□□□□ -0.42
SSU72P53538 RVS167YDR388W 1449 nt12.35□□□□□ -0.43
SSU72P53538 PKP1YIL042C 1185 nt12.27□□□□□ -0.45
SSU72P53538 SCJ1YMR214W 1134 nt12.05□□□□□ -0.48
SSU72P53538 tP(UGG)O3tP(UGG)O3 72 nt11.9□□□□□ -0.5
SSU72P53538 PET122YER153C 765 nt11.82□□□□□ -0.52
SSU72P53538 SHR5YOL110W 714 nt11.79□□□□□ -0.52
SSU72P53538 SCR1SCR1 522 nt11.76□□□□□ -0.53
SSU72P53538 PUT4YOR348C 1884 nt11.7□□□□□ -0.54
SSU72P53538 URN1YPR152C 1398 nt11.58□□□□□ -0.56
SSU72P53538 YDJ1YNL064C 1230 nt11.55□□□□□ -0.56
SSU72P53538 ATS1YAL020C 1002 nt11.54□□□□□ -0.56
SSU72P53538 RPN10YHR200W 807 nt11.47□□□□□ -0.57
SSU72P53538 RRN5YLR141W 1092 nt11.47□□□□□ -0.57
SSU72P53538 OPI9YLR338W 858 nt11.47□□□□□ -0.57
SSU72P53538 DEP1YAL013W 1218 nt11.46□□□□□ -0.57
SSU72P53538 ARE1YCR048W 1833 nt11.41□□□□□ -0.58
SSU72P53538 SAH1YER043C 1350 nt11.41□□□□□ -0.58
SSU72P53538 SSA1YAL005C 1929 nt11.37□□□□□ -0.59
SSU72P53538 YNL208WYNL208W 600 nt11.35□□□□□ -0.59
SSU72P53538 POA1YBR022W 534 nt11.34□□□□□ -0.59
SSU72P53538 YHR049C-AYHR049C-A 297 nt11.31□□□□□ -0.6
SSU72P53538 GAR1YHR089C 618 nt11.29□□□□□ -0.6
SSU72P53538 YER088W-BYER088W-B 147 nt11.24□□□□□ -0.61
SSU72P53538 RSB1YOR049C 1065 nt11.21□□□□□ -0.61
SSU72P53538 PUN1YLR414C 792 nt11.19□□□□□ -0.62
SSU72P53538 PAC11YDR488C 1602 nt11.19□□□□□ -0.62
SSU72P53538 FPS1YLL043W 2010 nt11.18□□□□□ -0.62
SSU72P53538 BSC6YOL137W 1494 nt11.14□□□□□ -0.63
SSU72P53538 NVJ2YPR091C 2313 nt11.13□□□□□ -0.63
SSU72P53538 BUD23YCR047C 828 nt11.06□□□□□ -0.64
SSU72P53538 YJR018WYJR018W 363 nt11.05□□□□□ -0.64
SSU72P53538 PTC2YER089C 1395 nt11.03□□□□□ -0.64
SSU72P53538 NAB2YGL122C 1578 nt10.95□□□□□ -0.66
SSU72P53538 TIR1YER011W 765 nt10.93□□□□□ -0.66
SSU72P53538 SSA4YER103W 1929 nt10.86□□□□□ -0.67
SSU72P53538 RPP2BYDR382W 333 nt10.85□□□□□ -0.67
SSU72P53538 DAL1YIR027C 1383 nt10.76□□□□□ -0.69
SSU72P53538 INM2YDR287W 879 nt10.73□□□□□ -0.69
SSU72P53538 FPR4YLR449W 1179 nt10.72□□□□□ -0.69
SSU72P53538 PST2YDR032C 597 nt10.7□□□□□ -0.7
SSU72P53538 FIS1YIL065C 468 nt10.7□□□□□ -0.7
SSU72P53538 YJR120WYJR120W 351 nt10.7□□□□□ -0.7
SSU72P53538 SPT5YML010W 3192 nt10.66□□□□□ -0.7
SSU72P53538 PHO4YFR034C 939 nt10.63□□□□□ -0.71
SSU72P53538 Q0182Q0182 405 nt10.63□□□□□ -0.71
SSU72P53538 BDF1YLR399C 2061 nt10.59□□□□□ -0.71
SSU72P53538 YBL100CYBL100C 315 nt10.55□□□□□ -0.72
SSU72P53538 BDH2YAL061W 1254 nt10.51□□□□□ -0.73
SSU72P53538 MEP2YNL142W 1500 nt10.49□□□□□ -0.73
SSU72P53538 YPS1YLR120C 1710 nt10.49□□□□□ -0.73
SSU72P53538 SRB2YHR041C 633 nt10.45□□□□□ -0.74
SSU72P53538 YHR165W-AYHR165W-A 312 nt10.44□□□□□ -0.74
SSU72P53538 TAT1YBR069C 1860 nt10.44□□□□□ -0.74
SSU72P53538 FUN26YAL022C 1554 nt10.4□□□□□ -0.74
SSU72P53538 YDR095CYDR095C 411 nt10.4□□□□□ -0.74
SSU72P53538 TRM9YML014W 840 nt10.39□□□□□ -0.75
SSU72P53538 ALF1YNL148C 765 nt10.38□□□□□ -0.75
SSU72P53538 WWM1YFL010C 636 nt10.37□□□□□ -0.75
SSU72P53538 LSM3YLR438C-A 270 nt10.37□□□□□ -0.75
SSU72P53538 YGR021WYGR021W 873 nt10.35□□□□□ -0.75
SSU72P53538 YJL225CYJL225C 5277 nt10.34□□□□□ -0.75
SSU72P53538 SHU1YHL006C 453 nt10.3□□□□□ -0.76
SSU72P53538 YFL021C-AYFL021C-A 855 nt10.28□□□□□ -0.76
SSU72P53538 SUF2tP(AGG)C 72 nt10.28□□□□□ -0.76
SSU72P53538 SUF10tP(AGG)N 72 nt10.28□□□□□ -0.76
SSU72P53538 YMR090WYMR090W 684 nt10.26□□□□□ -0.77
SSU72P53538 DCW1YKL046C 1350 nt10.26□□□□□ -0.77
SSU72P53538 CCT6YDR188W 1641 nt10.25□□□□□ -0.77
SSU72P53538 RPM1RPM1 483 nt10.23□□□□□ -0.77
SSU72P53538 RPP2AYOL039W 321 nt10.23□□□□□ -0.77
SSU72P53538 YKL097CYKL097C 411 nt10.22□□□□□ -0.77
SSU72P53538 HOM6YJR139C 1080 nt10.21□□□□□ -0.77
SSU72P53538 UME6YDR207C 2511 nt10.2□□□□□ -0.78
SSU72P53538 YAL037C-BYAL037C-B 975 nt10.19□□□□□ -0.78
Retrieved 100 of 7,029 protein–RNA pairs in 20.3 ms