RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 RPP0P05317 312 aaKnown RBP-3.71□□□□□ -3
snR40snR40 RPL27AP0C2H6 136 aaKnown RBP-3.71□□□□□ -3
snR40snR40 RTR1P40084 226 aaPredicted RBP-3.71□□□□□ -3
snR40snR40 LSM5P40089 93 aaKnown RBP-3.71□□□□□ -3
snR40snR40 MPM1P40364 252 aa-3.71□□□□□ -3
snR40snR40 YJL009WP47078 108 aa-3.71□□□□□ -3
snR40snR40 MPC3P53311 146 aa-3.71□□□□□ -3
snR40snR40 MRPS12P53732 153 aa-3.71□□□□□ -3
snR40snR40 YNL134CP53912 376 aaKnown RBP-3.71□□□□□ -3
snR40snR40 SSQ1Q05931 657 aaPredicted RBP-3.71□□□□□ -3
snR40snR40 SFH1Q06168 426 aa-3.71□□□□□ -3
snR40snR40 DGA1Q08650 418 aa-3.71□□□□□ -3
snR40snR40 YPR170W-BP0C5R9 85 aa-3.72□□□□□ -3
snR40snR40 RDS1P25611 832 aa-3.72□□□□□ -3
snR40snR40 GSP2P32836 220 aaKnown RBP-3.72□□□□□ -3
snR40snR40 MRPL28P36527 147 aa-3.72□□□□□ -3
snR40snR40 YBR027CP38220 110 aa-3.72□□□□□ -3
snR40snR40 APS3P47064 194 aa-3.72□□□□□ -3
snR40snR40 RRP17Q04031 235 aaPredicted RBP-3.72□□□□□ -3
snR40snR40 GPI17Q04080 534 aa-3.72□□□□□ -3
snR40snR40 YOL014WQ08110 124 aa-3.72□□□□□ -3
snR40snR40 VAM10Q08474 114 aa-3.72□□□□□ -3
snR40snR40 YOR186WQ08560 144 aa-3.72□□□□□ -3
snR40snR40 RPL24AP04449 155 aaKnown RBP-3.73□□□□□ -3.01
snR40snR40 RPL24BP24000 155 aaKnown RBP-3.73□□□□□ -3.01
snR40snR40 BLI1P35727 113 aa-3.73□□□□□ -3.01
snR40snR40 GTO1P48239 356 aa-3.73□□□□□ -3.01
snR40snR40 YLR413WQ06689 675 aa-3.73□□□□□ -3.01
snR40snR40 ECM31P38122 312 aa-3.74□□□□□ -3.01
snR40snR40 YEA6P39953 335 aa-3.74□□□□□ -3.01
snR40snR40 NSA1P53136 463 aaPredicted RBP-3.74□□□□□ -3.01
snR40snR40 FIT3Q08907 204 aa-3.74□□□□□ -3.01
snR40snR40 GPM3Q12326 303 aa-3.74□□□□□ -3.01
snR40snR40 TY1B-HO13535 1793 aa-3.74□□□□□ -3.01
snR40snR40 STH1P32597 1359 aa-3.75□□□□□ -3.01
snR40snR40 YKL070WP36087 169 aa-3.75□□□□□ -3.01
snR40snR40 THO1P40040 218 aaKnown RBP-3.75□□□□□ -3.01
snR40snR40 BXI1P48558 297 aa-3.75□□□□□ -3.01
snR40snR40 ABF2Q02486 183 aa-3.75□□□□□ -3.01
snR40snR40 RPL18AP0CX49 186 aaKnown RBP-3.76□□□□□ -3.01
snR40snR40 RPL18BP0CX50 186 aaKnown RBP-3.76□□□□□ -3.01
snR40snR40 RME1P32338 300 aaKnown RBP-3.76□□□□□ -3.01
snR40snR40 IRC22P40006 225 aa-3.76□□□□□ -3.01
snR40snR40 NOP19P53317 196 aaPredicted RBP-3.76□□□□□ -3.01
snR40snR40 YNL146WP53906 100 aa-3.76□□□□□ -3.01
snR40snR40 YDR274CP87283 123 aa-3.76□□□□□ -3.01
snR40snR40 AVO2Q04749 426 aa-3.76□□□□□ -3.01
snR40snR40 TCP1P12612 559 aaKnown RBP-3.77□□□□□ -3.01
snR40snR40 VMA8P32610 256 aaKnown RBP-3.77□□□□□ -3.01
snR40snR40 CAT5P41735 233 aa-3.77□□□□□ -3.01
snR40snR40 YMR030W-AQ3E760 96 aa-3.77□□□□□ -3.01
snR40snR40 CDC33P07260 213 aaKnown RBP-3.78□□□□□ -3.01
snR40snR40 YCR023CP25351 611 aa-3.78□□□□□ -3.01
snR40snR40 ATG22P25568 528 aa-3.78□□□□□ -3.01
snR40snR40 POP4P38336 279 aa-3.78□□□□□ -3.01
snR40snR40 SSK22P25390 1331 aaPredicted RBP-3.78□□□□□ -3.01
snR40snR40 YKR104WP0CE69 306 aa-3.79□□□□□ -3.02
snR40snR40 YPT31P38555 223 aaKnown RBP-3.79□□□□□ -3.02
snR40snR40 COX16P47081 118 aa-3.79□□□□□ -3.02
snR40snR40 YJR128WP47162 119 aa-3.79□□□□□ -3.02
snR40snR40 MLC1P53141 149 aa-3.79□□□□□ -3.02
snR40snR40 YNL046WP53956 172 aa-3.79□□□□□ -3.02
snR40snR40 RRP40Q08285 240 aaKnown RBP-3.79□□□□□ -3.02
snR40snR40 SPT7P35177 1332 aa-3.79□□□□□ -3.02
snR40snR40 HSL1P34244 1518 aa-3.8□□□□□ -3.02
snR40snR40 ATG8P38182 117 aaRIP-Chip data-3.8□□□□□ -3.02not detected
snR40snR40 SNZ3P43545 298 aa-3.8□□□□□ -3.02
snR40snR40 ARP3P47117 449 aaKnown RBP-3.8□□□□□ -3.02
snR40snR40 CDC14Q00684 551 aa-3.8□□□□□ -3.02
snR40snR40 MED1Q12321 566 aa-3.8□□□□□ -3.02
snR40snR40 RDI1Q12434 202 aa-3.8□□□□□ -3.02
snR40snR40 RIB3Q99258 208 aa-3.8□□□□□ -3.02
snR40snR40 RPS5P26783 225 aaKnown RBP-3.81□□□□□ -3.02
snR40snR40 TOM20P35180 183 aa-3.81□□□□□ -3.02
snR40snR40 VPS55P47111 140 aa-3.81□□□□□ -3.02
snR40snR40 LPP1Q04396 274 aa-3.81□□□□□ -3.02
snR40snR40 YRF1-3P0CX14 1859 aa-3.81□□□□□ -3.02
snR40snR40 YRF1-7P0CX15 1859 aa-3.81□□□□□ -3.02
snR40snR40 IPI1P38803 334 aaPredicted RBP-3.82□□□□□ -3.02
snR40snR40 YMR295CQ03559 197 aa-3.82□□□□□ -3.02
snR40snR40 TY4B-HP0C2J7 1802 aa-3.83□□□□□ -3.02
snR40snR40 YIL177CP40434 1758 aa-3.83□□□□□ -3.02
snR40snR40 YJL225CP40889 1758 aa-3.83□□□□□ -3.02
snR40snR40 VPS24P36095 224 aaKnown RBP-3.83□□□□□ -3.02
snR40snR40 MRPL39P36533 70 aa-3.83□□□□□ -3.02
snR40snR40 TDA11P38854 504 aa-3.83□□□□□ -3.02
snR40snR40 BUD27P43573 796 aaKnown RBP RIP-Chip data-3.83□□□□□ -3.02not detected
snR40snR40 RPA34P47006 233 aaPredicted RBP-3.83□□□□□ -3.02
snR40snR40 ILM1P47155 203 aa-3.83□□□□□ -3.02
snR40snR40 HHT1P61830 136 aa-3.83□□□□□ -3.02
snR40snR40 DID2P69771 204 aa-3.83□□□□□ -3.02
snR40snR40 GPN3Q06543 272 aa-3.83□□□□□ -3.02
snR40snR40 SNF8Q12483 233 aa-3.83□□□□□ -3.02
snR40snR40 POR1P04840 283 aaKnown RBP-3.84□□□□□ -3.02
snR40snR40 ERD2P18414 219 aa-3.84□□□□□ -3.02
snR40snR40 YMD8Q03697 442 aa-3.84□□□□□ -3.02
snR40snR40 IRC21Q04772 201 aa-3.84□□□□□ -3.02
snR40snR40 ATG17Q06410 417 aa-3.84□□□□□ -3.02
snR40snR40 SME1Q12330 94 aaPredicted RBP-3.84□□□□□ -3.02
snR40snR40 SKS1Q12505 502 aa-3.84□□□□□ -3.02
Retrieved 100 of 5,963 RNA–protein pairs in 610.1 ms