Protein–RNA interactions for Protein: P40089

LSM5, U6 snRNA-associated Sm-like protein LSm5, yeastyeast

Known RBP Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM5P40089 YML009W-BYML009W-B 477 nt20.13■□□□□ 0.81
LSM5P40089 NSR1YGR159C 1245 nt20■□□□□ 0.79
LSM5P40089 NOP1YDL014W 984 nt19.62■□□□□ 0.73
LSM5P40089 YKL036CYKL036C 393 nt18.19■□□□□ 0.5
LSM5P40089 MDJ1YFL016C 1536 nt17.63■□□□□ 0.41
LSM5P40089 Q0297Q0297 156 nt17.24■□□□□ 0.35
LSM5P40089 SRX1YKL086W 384 nt17.18■□□□□ 0.34
LSM5P40089 YJL027CYJL027C 417 nt16.95■□□□□ 0.3
LSM5P40089 SCS3YGL126W 1143 nt16.58■□□□□ 0.24
LSM5P40089 YCR051WYCR051W 669 nt16.23■□□□□ 0.19
LSM5P40089 YOL085CYOL085C 342 nt15.75■□□□□ 0.11
LSM5P40089 DBP2YNL112W 1641 nt15.69■□□□□ 0.1
LSM5P40089 TRN1tP(UGG)A 72 nt15.5■□□□□ 0.07
LSM5P40089 SUF9tP(UGG)F 72 nt15.5■□□□□ 0.07
LSM5P40089 SUF8tP(UGG)H 72 nt15.5■□□□□ 0.07
LSM5P40089 tP(UGG)LtP(UGG)L 72 nt15.5■□□□□ 0.07
LSM5P40089 SUF7tP(UGG)M 72 nt15.5■□□□□ 0.07
LSM5P40089 tP(UGG)N1tP(UGG)N1 72 nt15.5■□□□□ 0.07
LSM5P40089 tP(UGG)N2tP(UGG)N2 72 nt15.5■□□□□ 0.07
LSM5P40089 tP(UGG)O1tP(UGG)O1 72 nt15.5■□□□□ 0.07
LSM5P40089 SUF11tP(UGG)O2 72 nt15.5■□□□□ 0.07
LSM5P40089 RPP1BYDL130W 321 nt15.45■□□□□ 0.06
LSM5P40089 PKP1YIL042C 1185 nt15.44■□□□□ 0.06
LSM5P40089 CCC1YLR220W 969 nt15.23■□□□□ 0.03
LSM5P40089 YBR190WYBR190W 312 nt15.06■□□□□ 0
LSM5P40089 ATS1YAL020C 1002 nt14.85□□□□□ -0.03
LSM5P40089 SCJ1YMR214W 1134 nt14.85□□□□□ -0.03
LSM5P40089 PET122YER153C 765 nt14.74□□□□□ -0.05
LSM5P40089 RVS167YDR388W 1449 nt14.73□□□□□ -0.05
LSM5P40089 tP(UGG)O3tP(UGG)O3 72 nt14.67□□□□□ -0.06
LSM5P40089 RTC3YHR087W 336 nt14.64□□□□□ -0.07
LSM5P40089 SCR1SCR1 522 nt14.59□□□□□ -0.07
LSM5P40089 RRN5YLR141W 1092 nt14.31□□□□□ -0.12
LSM5P40089 SHR5YOL110W 714 nt14.26□□□□□ -0.13
LSM5P40089 YDJ1YNL064C 1230 nt14.21□□□□□ -0.13
LSM5P40089 YER088W-BYER088W-B 147 nt14.04□□□□□ -0.16
LSM5P40089 RSB1YOR049C 1065 nt14.01□□□□□ -0.17
LSM5P40089 GAR1YHR089C 618 nt13.81□□□□□ -0.2
LSM5P40089 URN1YPR152C 1398 nt13.79□□□□□ -0.2
LSM5P40089 PST2YDR032C 597 nt13.76□□□□□ -0.21
LSM5P40089 DEP1YAL013W 1218 nt13.75□□□□□ -0.21
LSM5P40089 PUT4YOR348C 1884 nt13.63□□□□□ -0.23
LSM5P40089 RPN10YHR200W 807 nt13.61□□□□□ -0.23
LSM5P40089 OPI9YLR338W 858 nt13.61□□□□□ -0.23
LSM5P40089 YNL208WYNL208W 600 nt13.61□□□□□ -0.23
LSM5P40089 SSA3YBL075C 1950 nt13.58□□□□□ -0.24
LSM5P40089 SAH1YER043C 1350 nt13.45□□□□□ -0.26
LSM5P40089 ARE1YCR048W 1833 nt13.39□□□□□ -0.27
LSM5P40089 TIR1YER011W 765 nt13.38□□□□□ -0.27
LSM5P40089 YKL097CYKL097C 411 nt13.23□□□□□ -0.29
LSM5P40089 PUN1YLR414C 792 nt13.21□□□□□ -0.29
LSM5P40089 SSA1YAL005C 1929 nt13.21□□□□□ -0.3
LSM5P40089 YHR049C-AYHR049C-A 297 nt13.19□□□□□ -0.3
LSM5P40089 SHU1YHL006C 453 nt13.16□□□□□ -0.3
LSM5P40089 YJR018WYJR018W 363 nt13.16□□□□□ -0.3
LSM5P40089 POA1YBR022W 534 nt13.15□□□□□ -0.3
LSM5P40089 YJR120WYJR120W 351 nt13.02□□□□□ -0.33
LSM5P40089 SRB2YHR041C 633 nt13□□□□□ -0.33
LSM5P40089 PTC2YER089C 1395 nt12.99□□□□□ -0.33
LSM5P40089 Q0182Q0182 405 nt12.99□□□□□ -0.33
LSM5P40089 RPP2BYDR382W 333 nt12.91□□□□□ -0.34
LSM5P40089 YAL037C-BYAL037C-B 975 nt12.88□□□□□ -0.35
LSM5P40089 BSC6YOL137W 1494 nt12.87□□□□□ -0.35
LSM5P40089 BUD23YCR047C 828 nt12.85□□□□□ -0.35
LSM5P40089 NAB2YGL122C 1578 nt12.85□□□□□ -0.35
LSM5P40089 WWM1YFL010C 636 nt12.78□□□□□ -0.36
LSM5P40089 YGR021WYGR021W 873 nt12.77□□□□□ -0.37
LSM5P40089 HOM6YJR139C 1080 nt12.74□□□□□ -0.37
LSM5P40089 YOR139CYOR139C 393 nt12.71□□□□□ -0.37
LSM5P40089 INM2YDR287W 879 nt12.7□□□□□ -0.38
LSM5P40089 BDH2YAL061W 1254 nt12.7□□□□□ -0.38
LSM5P40089 DAL1YIR027C 1383 nt12.69□□□□□ -0.38
LSM5P40089 FIS1YIL065C 468 nt12.69□□□□□ -0.38
LSM5P40089 MNP1YGL068W 585 nt12.65□□□□□ -0.38
LSM5P40089 YFL021C-AYFL021C-A 855 nt12.62□□□□□ -0.39
LSM5P40089 FPR4YLR449W 1179 nt12.58□□□□□ -0.4
LSM5P40089 PHO4YFR034C 939 nt12.57□□□□□ -0.4
LSM5P40089 YBL100CYBL100C 315 nt12.57□□□□□ -0.4
LSM5P40089 LSM3YLR438C-A 270 nt12.56□□□□□ -0.4
LSM5P40089 NPL3YDR432W 1245 nt12.55□□□□□ -0.4
LSM5P40089 RKM5YLR137W 1104 nt12.54□□□□□ -0.4
LSM5P40089 YOL037CYOL037C 354 nt12.52□□□□□ -0.41
LSM5P40089 FUN26YAL022C 1554 nt12.43□□□□□ -0.42
LSM5P40089 TRM9YML014W 840 nt12.41□□□□□ -0.42
LSM5P40089 MOT3YMR070W 1473 nt12.34□□□□□ -0.43
LSM5P40089 CCT6YDR188W 1641 nt12.33□□□□□ -0.44
LSM5P40089 YPS1YLR120C 1710 nt12.31□□□□□ -0.44
LSM5P40089 SPT5YML010W 3192 nt12.29□□□□□ -0.44
LSM5P40089 YDR095CYDR095C 411 nt12.26□□□□□ -0.45
LSM5P40089 tM(CAU)CtM(CAU)C 72 nt12.21□□□□□ -0.45
LSM5P40089 IMT4tM(CAU)E 72 nt12.21□□□□□ -0.45
LSM5P40089 IMT3tM(CAU)J3 72 nt12.21□□□□□ -0.45
LSM5P40089 IMT1tM(CAU)O1 72 nt12.21□□□□□ -0.45
LSM5P40089 IMT2tM(CAU)P 72 nt12.21□□□□□ -0.45
LSM5P40089 ALF1YNL148C 765 nt12.21□□□□□ -0.45
LSM5P40089 SUF2tP(AGG)C 72 nt12.2□□□□□ -0.46
LSM5P40089 SUF10tP(AGG)N 72 nt12.2□□□□□ -0.46
LSM5P40089 YLR281CYLR281C 468 nt12.2□□□□□ -0.46
LSM5P40089 WHI5YOR083W 888 nt12.14□□□□□ -0.47
LSM5P40089 SSA4YER103W 1929 nt12.13□□□□□ -0.47
Retrieved 100 of 7,029 protein–RNA pairs in 13.3 ms