RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 FAP1P53971 965 aa5.44□□□□□ -1.54
snR40snR40 PRY3P47033 881 aa5.2□□□□□ -1.58
snR40snR40 YCK3P39962 524 aa4.92□□□□□ -1.62
snR40snR40 HAA1Q12753 694 aaKnown RBP4.81□□□□□ -1.64
snR40snR40 BUD31P25337 157 aaPredicted RBP4.58□□□□□ -1.68
snR40snR40 AAD16Q02895 342 aa4.47□□□□□ -1.69
snR40snR40 PRI1P10363 409 aa4.3□□□□□ -1.72
snR40snR40 SIS1P25294 352 aaKnown RBP4.15□□□□□ -1.75
snR40snR40 YGL015CP33199 130 aa4.13□□□□□ -1.75
snR40snR40 MTC1P47018 478 aaKnown RBP3.94□□□□□ -1.78
snR40snR40 TSR3Q12094 313 aaKnown RBP3.93□□□□□ -1.78
snR40snR40 MRPL32P25348 183 aa3.79□□□□□ -1.8
snR40snR40 UBP9P39967 754 aa3.75□□□□□ -1.81
snR40snR40 RGA2Q06407 1009 aa3.74□□□□□ -1.81
snR40snR40 RPG1P38249 964 aaKnown RBP3.64□□□□□ -1.83
snR40snR40 ISW2Q08773 1120 aa3.62□□□□□ -1.83
snR40snR40 UBP10P53874 792 aaPredicted RBP3.47□□□□□ -1.85
snR40snR40 MAP2P38174 421 aaKnown RBP3.41□□□□□ -1.86
snR40snR40 TGL3P40308 642 aa3.34□□□□□ -1.87
snR40snR40 CDC27P38042 758 aa3.32□□□□□ -1.88
snR40snR40 TIF4632P39936 914 aaKnown RBP3.31□□□□□ -1.88
snR40snR40 RGA1P39083 1007 aa3.28□□□□□ -1.88
snR40snR40 YJL171CP46992 396 aa3.27□□□□□ -1.89
snR40snR40 AIR2Q12476 344 aaKnown RBP3.24□□□□□ -1.89
snR40snR40 YBL029C-AQ3E756 94 aa3.21□□□□□ -1.9
snR40snR40 FKH1P40466 484 aa3.15□□□□□ -1.91
snR40snR40 VNX1P42839 908 aa3.11□□□□□ -1.91
snR40snR40 SLX5P32828 619 aaKnown RBP3.09□□□□□ -1.91
snR40snR40 BMT6Q12291 365 aa3.07□□□□□ -1.92
snR40snR40 SPP1Q03012 353 aa3.04□□□□□ -1.92
snR40snR40 MST1P07236 462 aa3.03□□□□□ -1.92
snR40snR40 SCY1P53009 804 aa3.01□□□□□ -1.93
snR40snR40 TIF11P38912 153 aaKnown RBP2.91□□□□□ -1.94
snR40snR40 BCK2P33306 851 aa2.89□□□□□ -1.95
snR40snR40 YKR023WP36119 530 aaKnown RBP2.89□□□□□ -1.95
snR40snR40 YOR238WQ08634 303 aa2.88□□□□□ -1.95
snR40snR40 LDB19Q12502 818 aa2.88□□□□□ -1.95
snR40snR40 REB1P21538 810 aa2.87□□□□□ -1.95
snR40snR40 WSC3Q12215 556 aa2.86□□□□□ -1.95
snR40snR40 DCD1P06773 312 aa2.84□□□□□ -1.95
snR40snR40 TFC8Q12308 588 aa2.83□□□□□ -1.96
snR40snR40 HOP09932 586 aa2.8□□□□□ -1.96
snR40snR40 IOC2Q12072 812 aa2.8□□□□□ -1.96
snR40snR40 ULI1P43604 169 aa2.75□□□□□ -1.97
snR40snR40 SRC1Q03707 834 aa2.75□□□□□ -1.97
snR40snR40 DPS1P04802 557 aaKnown RBP2.74□□□□□ -1.97
snR40snR40 RPL17AP05740 184 aaKnown RBP2.74□□□□□ -1.97
snR40snR40 RPL17BP46990 184 aaKnown RBP2.74□□□□□ -1.97
snR40snR40 NSR1P27476 414 aaKnown RBP RIP-Chip data2.72□□□□□ -1.97not detected
snR40snR40 XDJ1P39102 459 aa2.72□□□□□ -1.97
snR40snR40 RSE1Q04693 1361 aaKnown RBP2.72□□□□□ -1.97
snR40snR40 AVT3P36062 692 aa2.68□□□□□ -1.98
snR40snR40 YPL062WQ02781 134 aa2.67□□□□□ -1.98
snR40snR40 NCR1Q12200 1170 aa2.67□□□□□ -1.98
snR40snR40 CHL1P22516 861 aaPredicted RBP2.66□□□□□ -1.98
snR40snR40 BCH2P36122 765 aa2.66□□□□□ -1.98
snR40snR40 RTG1P32607 177 aa2.65□□□□□ -1.99
snR40snR40 YAP5P40574 245 aa2.61□□□□□ -1.99
snR40snR40 GTT3P39996 337 aa2.59□□□□□ -1.99
snR40snR40 SEC61P32915 480 aa2.58□□□□□ -2
snR40snR40 PRE3P38624 215 aa2.58□□□□□ -2
snR40snR40 VRP1P37370 817 aa2.57□□□□□ -2
snR40snR40 SPT21P35209 758 aa2.54□□□□□ -2
snR40snR40 EAP1P36041 632 aaKnown RBP2.54□□□□□ -2
snR40snR40 SAP30P38429 201 aa2.53□□□□□ -2
snR40snR40 YNL035CP53962 389 aaKnown RBP2.53□□□□□ -2
snR40snR40 BDF1P35817 686 aa2.51□□□□□ -2.01
snR40snR40 MSB4Q12317 492 aa2.51□□□□□ -2.01
snR40snR40 TFG1P41895 735 aaPredicted RBP2.49□□□□□ -2.01
snR40snR40 TRP5P00931 707 aaKnown RBP2.48□□□□□ -2.01
snR40snR40 EPS1P40557 701 aa2.46□□□□□ -2.02
snR40snR40 YDL129WQ07555 291 aa2.43□□□□□ -2.02
snR40snR40 SET4P42948 560 aa2.36□□□□□ -2.03
snR40snR40 DAN4P47179 1161 aa2.36□□□□□ -2.03
snR40snR40 YOL036WQ08206 761 aa2.36□□□□□ -2.03
snR40snR40 TRK1P12685 1235 aa2.34□□□□□ -2.03
snR40snR40 MTC5Q03897 1148 aa2.31□□□□□ -2.04
snR40snR40 YDR344CQ05510 147 aa2.31□□□□□ -2.04
snR40snR40 DIP2Q12220 943 aaPredicted RBP2.31□□□□□ -2.04
snR40snR40 JIP4Q03361 876 aa2.29□□□□□ -2.04
snR40snR40 PIB1Q06651 286 aa2.29□□□□□ -2.04
snR40snR40 RAS1P01119 309 aa2.28□□□□□ -2.04
snR40snR40 ELP4Q02884 456 aaKnown RBP2.27□□□□□ -2.05
snR40snR40 GBP2P25555 427 aaKnown RBP RIP-Chip data2.26□□□□□ -2.05not detected
snR40snR40 GAR1P28007 205 aaKnown RBP2.24□□□□□ -2.05
snR40snR40 ARH1P48360 493 aa2.16□□□□□ -2.06
snR40snR40 PEX29Q03370 554 aa2.16□□□□□ -2.06
snR40snR40 SPT23P35210 1082 aa2.14□□□□□ -2.07
snR40snR40 PTC4P38089 393 aa2.14□□□□□ -2.07
snR40snR40 SAM3Q08986 587 aa2.13□□□□□ -2.07
snR40snR40 AMS1P22855 1083 aa2.11□□□□□ -2.07
snR40snR40 BRE2P43132 505 aa2.1□□□□□ -2.07
snR40snR40 BBC1P47068 1157 aa2.1□□□□□ -2.07
snR40snR40 ABP1P15891 592 aaKnown RBP2.09□□□□□ -2.07
snR40snR40 YEL023CP39992 682 aa2.09□□□□□ -2.07
snR40snR40 YML082WQ04533 649 aaKnown RBP2.09□□□□□ -2.07
snR40snR40 NRD1P53617 575 aaKnown RBP RIP-Chip data2.08□□□□□ -2.08not detected
snR40snR40 PML39Q03760 334 aa2.08□□□□□ -2.08
snR40snR40 HTA1P04911 132 aaKnown RBP2.06□□□□□ -2.08
snR40snR40 HTA2P04912 132 aa2.06□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms