Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 NSR1YGR159C 1245 nt18.75■□□□□ 0.59
TDA11P38854 YML009W-BYML009W-B 477 nt18.45■□□□□ 0.54
TDA11P38854 NOP1YDL014W 984 nt18.08■□□□□ 0.48
TDA11P38854 MDJ1YFL016C 1536 nt17.42■□□□□ 0.38
TDA11P38854 YKL036CYKL036C 393 nt16.91■□□□□ 0.3
TDA11P38854 YJL027CYJL027C 417 nt15.97■□□□□ 0.15
TDA11P38854 Q0297Q0297 156 nt15.96■□□□□ 0.15
TDA11P38854 SRX1YKL086W 384 nt15.83■□□□□ 0.12
TDA11P38854 SCS3YGL126W 1143 nt15.51■□□□□ 0.07
TDA11P38854 SSA3YBL075C 1950 nt15.49■□□□□ 0.07
TDA11P38854 DBP2YNL112W 1641 nt15.12■□□□□ 0.01
TDA11P38854 YBR190WYBR190W 312 nt15.08■□□□□ 0
TDA11P38854 YCR051WYCR051W 669 nt14.95□□□□□ -0.02
TDA11P38854 RTC3YHR087W 336 nt14.66□□□□□ -0.06
TDA11P38854 YOL085CYOL085C 342 nt14.65□□□□□ -0.06
TDA11P38854 PUT4YOR348C 1884 nt14.37□□□□□ -0.11
TDA11P38854 PKP1YIL042C 1185 nt14.32□□□□□ -0.12
TDA11P38854 RPP1BYDL130W 321 nt14.29□□□□□ -0.12
TDA11P38854 TRN1tP(UGG)A 72 nt14.18□□□□□ -0.14
TDA11P38854 SUF9tP(UGG)F 72 nt14.18□□□□□ -0.14
TDA11P38854 SUF8tP(UGG)H 72 nt14.18□□□□□ -0.14
TDA11P38854 tP(UGG)LtP(UGG)L 72 nt14.18□□□□□ -0.14
TDA11P38854 SUF7tP(UGG)M 72 nt14.18□□□□□ -0.14
TDA11P38854 tP(UGG)N1tP(UGG)N1 72 nt14.18□□□□□ -0.14
TDA11P38854 tP(UGG)N2tP(UGG)N2 72 nt14.18□□□□□ -0.14
TDA11P38854 tP(UGG)O1tP(UGG)O1 72 nt14.18□□□□□ -0.14
TDA11P38854 SUF11tP(UGG)O2 72 nt14.18□□□□□ -0.14
TDA11P38854 SCJ1YMR214W 1134 nt14.12□□□□□ -0.15
TDA11P38854 RVS167YDR388W 1449 nt13.98□□□□□ -0.17
TDA11P38854 CCC1YLR220W 969 nt13.97□□□□□ -0.17
TDA11P38854 ATS1YAL020C 1002 nt13.96□□□□□ -0.17
TDA11P38854 ARE1YCR048W 1833 nt13.85□□□□□ -0.19
TDA11P38854 POA1YBR022W 534 nt13.8□□□□□ -0.2
TDA11P38854 SPT5YML010W 3192 nt13.77□□□□□ -0.2
TDA11P38854 BSC6YOL137W 1494 nt13.68□□□□□ -0.22
TDA11P38854 YHR049C-AYHR049C-A 297 nt13.64□□□□□ -0.23
TDA11P38854 SSA4YER103W 1929 nt13.64□□□□□ -0.23
TDA11P38854 PET122YER153C 765 nt13.6□□□□□ -0.23
TDA11P38854 SAH1YER043C 1350 nt13.56□□□□□ -0.24
TDA11P38854 SCR1SCR1 522 nt13.5□□□□□ -0.25
TDA11P38854 tP(UGG)O3tP(UGG)O3 72 nt13.47□□□□□ -0.25
TDA11P38854 URN1YPR152C 1398 nt13.45□□□□□ -0.26
TDA11P38854 OPI9YLR338W 858 nt13.43□□□□□ -0.26
TDA11P38854 SHR5YOL110W 714 nt13.32□□□□□ -0.28
TDA11P38854 BDF1YLR399C 2061 nt13.24□□□□□ -0.29
TDA11P38854 BUD23YCR047C 828 nt13.23□□□□□ -0.29
TDA11P38854 RRN5YLR141W 1092 nt13.23□□□□□ -0.29
TDA11P38854 DEP1YAL013W 1218 nt13.18□□□□□ -0.3
TDA11P38854 YDJ1YNL064C 1230 nt13.07□□□□□ -0.32
TDA11P38854 RPN10YHR200W 807 nt13.05□□□□□ -0.32
TDA11P38854 TAT1YBR069C 1860 nt13.04□□□□□ -0.32
TDA11P38854 PUN1YLR414C 792 nt13.02□□□□□ -0.33
TDA11P38854 PTC2YER089C 1395 nt13.01□□□□□ -0.33
TDA11P38854 YER088W-BYER088W-B 147 nt12.99□□□□□ -0.33
TDA11P38854 RSB1YOR049C 1065 nt12.98□□□□□ -0.33
TDA11P38854 NAB2YGL122C 1578 nt12.96□□□□□ -0.33
TDA11P38854 MEP2YNL142W 1500 nt12.94□□□□□ -0.34
TDA11P38854 PST2YDR032C 597 nt12.91□□□□□ -0.34
TDA11P38854 YNL208WYNL208W 600 nt12.91□□□□□ -0.34
TDA11P38854 PAC11YDR488C 1602 nt12.85□□□□□ -0.35
TDA11P38854 YJR018WYJR018W 363 nt12.77□□□□□ -0.37
TDA11P38854 FIS1YIL065C 468 nt12.73□□□□□ -0.37
TDA11P38854 DCW1YKL046C 1350 nt12.71□□□□□ -0.37
TDA11P38854 GAR1YHR089C 618 nt12.65□□□□□ -0.38
TDA11P38854 DAL1YIR027C 1383 nt12.63□□□□□ -0.39
TDA11P38854 YBR220CYBR220C 1683 nt12.6□□□□□ -0.39
TDA11P38854 YPS1YLR120C 1710 nt12.59□□□□□ -0.39
TDA11P38854 FPR4YLR449W 1179 nt12.54□□□□□ -0.4
TDA11P38854 NVJ2YPR091C 2313 nt12.53□□□□□ -0.4
TDA11P38854 PHO4YFR034C 939 nt12.52□□□□□ -0.41
TDA11P38854 EMI2YDR516C 1503 nt12.51□□□□□ -0.41
TDA11P38854 YKL097CYKL097C 411 nt12.47□□□□□ -0.41
TDA11P38854 YMR090WYMR090W 684 nt12.47□□□□□ -0.41
TDA11P38854 YHR165W-AYHR165W-A 312 nt12.46□□□□□ -0.41
TDA11P38854 YJR120WYJR120W 351 nt12.44□□□□□ -0.42
TDA11P38854 INM2YDR287W 879 nt12.42□□□□□ -0.42
TDA11P38854 SDH1YKL148C 1923 nt12.38□□□□□ -0.43
TDA11P38854 YDR095CYDR095C 411 nt12.37□□□□□ -0.43
TDA11P38854 YDL221WYDL221W 552 nt12.36□□□□□ -0.43
TDA11P38854 PCH2YBR186W 1695 nt12.34□□□□□ -0.43
TDA11P38854 GUT2YIL155C 1950 nt12.31□□□□□ -0.44
TDA11P38854 SHU1YHL006C 453 nt12.3□□□□□ -0.44
TDA11P38854 RPP2BYDR382W 333 nt12.27□□□□□ -0.45
TDA11P38854 TIR1YER011W 765 nt12.26□□□□□ -0.45
TDA11P38854 SEC11YIR022W 504 nt12.24□□□□□ -0.45
TDA11P38854 CAC2YML102W 1407 nt12.24□□□□□ -0.45
TDA11P38854 SSA1YAL005C 1929 nt12.21□□□□□ -0.46
TDA11P38854 PTP1YDL230W 1008 nt12.19□□□□□ -0.46
TDA11P38854 YBL100CYBL100C 315 nt12.18□□□□□ -0.46
TDA11P38854 SCC4YER147C 1875 nt12.17□□□□□ -0.46
TDA11P38854 PIB2YGL023C 1908 nt12.14□□□□□ -0.47
TDA11P38854 RPP2AYOL039W 321 nt12.12□□□□□ -0.47
TDA11P38854 IRC15YPL017C 1500 nt12.06□□□□□ -0.48
TDA11P38854 GIS3YLR094C 1509 nt12.01□□□□□ -0.49
TDA11P38854 FUN26YAL022C 1554 nt12.01□□□□□ -0.49
TDA11P38854 YSC84YHR016C 1407 nt11.99□□□□□ -0.49
TDA11P38854 ALF1YNL148C 765 nt11.98□□□□□ -0.49
TDA11P38854 YAL037C-BYAL037C-B 975 nt11.97□□□□□ -0.49
TDA11P38854 YOR139CYOR139C 393 nt11.97□□□□□ -0.49
TDA11P38854 RTF1YGL244W 1677 nt11.95□□□□□ -0.5
Retrieved 100 of 7,029 protein–RNA pairs in 7.2 ms