Protein–RNA interactions for Protein: P47111

VPS55, Vacuolar protein sorting-associated protein 55, yeastyeast

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS55P47111 YML009W-BYML009W-B 477 nt16.24■□□□□ 0.19
VPS55P47111 NSR1YGR159C 1245 nt16.14■□□□□ 0.17
VPS55P47111 NOP1YDL014W 984 nt15.85■□□□□ 0.13
VPS55P47111 YKL036CYKL036C 393 nt14.63□□□□□ -0.07
VPS55P47111 MDJ1YFL016C 1536 nt14.24□□□□□ -0.13
VPS55P47111 Q0297Q0297 156 nt13.86□□□□□ -0.19
VPS55P47111 SRX1YKL086W 384 nt13.82□□□□□ -0.2
VPS55P47111 YJL027CYJL027C 417 nt13.66□□□□□ -0.22
VPS55P47111 SCS3YGL126W 1143 nt13.3□□□□□ -0.28
VPS55P47111 YCR051WYCR051W 669 nt13.11□□□□□ -0.31
VPS55P47111 YOL085CYOL085C 342 nt12.65□□□□□ -0.38
VPS55P47111 DBP2YNL112W 1641 nt12.6□□□□□ -0.39
VPS55P47111 TRN1tP(UGG)A 72 nt12.46□□□□□ -0.41
VPS55P47111 SUF9tP(UGG)F 72 nt12.46□□□□□ -0.41
VPS55P47111 SUF8tP(UGG)H 72 nt12.46□□□□□ -0.41
VPS55P47111 tP(UGG)LtP(UGG)L 72 nt12.46□□□□□ -0.41
VPS55P47111 SUF7tP(UGG)M 72 nt12.46□□□□□ -0.41
VPS55P47111 tP(UGG)N1tP(UGG)N1 72 nt12.46□□□□□ -0.41
VPS55P47111 tP(UGG)N2tP(UGG)N2 72 nt12.46□□□□□ -0.41
VPS55P47111 tP(UGG)O1tP(UGG)O1 72 nt12.46□□□□□ -0.41
VPS55P47111 SUF11tP(UGG)O2 72 nt12.46□□□□□ -0.41
VPS55P47111 RPP1BYDL130W 321 nt12.43□□□□□ -0.42
VPS55P47111 PKP1YIL042C 1185 nt12.43□□□□□ -0.42
VPS55P47111 CCC1YLR220W 969 nt12.32□□□□□ -0.44
VPS55P47111 YBR190WYBR190W 312 nt12.18□□□□□ -0.46
VPS55P47111 RVS167YDR388W 1449 nt11.94□□□□□ -0.5
VPS55P47111 ATS1YAL020C 1002 nt11.91□□□□□ -0.5
VPS55P47111 RTC3YHR087W 336 nt11.9□□□□□ -0.5
VPS55P47111 SCJ1YMR214W 1134 nt11.88□□□□□ -0.51
VPS55P47111 PET122YER153C 765 nt11.85□□□□□ -0.51
VPS55P47111 tP(UGG)O3tP(UGG)O3 72 nt11.8□□□□□ -0.52
VPS55P47111 SCR1SCR1 522 nt11.78□□□□□ -0.52
VPS55P47111 SSA3YBL075C 1950 nt11.61□□□□□ -0.55
VPS55P47111 RRN5YLR141W 1092 nt11.51□□□□□ -0.57
VPS55P47111 SHR5YOL110W 714 nt11.5□□□□□ -0.57
VPS55P47111 YDJ1YNL064C 1230 nt11.45□□□□□ -0.58
VPS55P47111 RSB1YOR049C 1065 nt11.3□□□□□ -0.6
VPS55P47111 YER088W-BYER088W-B 147 nt11.29□□□□□ -0.6
VPS55P47111 GAR1YHR089C 618 nt11.15□□□□□ -0.62
VPS55P47111 URN1YPR152C 1398 nt11.15□□□□□ -0.63
VPS55P47111 DEP1YAL013W 1218 nt11.12□□□□□ -0.63
VPS55P47111 RPN10YHR200W 807 nt11.04□□□□□ -0.64
VPS55P47111 PST2YDR032C 597 nt11.03□□□□□ -0.64
VPS55P47111 YNL208WYNL208W 600 nt11□□□□□ -0.65
VPS55P47111 OPI9YLR338W 858 nt10.99□□□□□ -0.65
VPS55P47111 PUT4YOR348C 1884 nt10.98□□□□□ -0.65
VPS55P47111 SAH1YER043C 1350 nt10.88□□□□□ -0.67
VPS55P47111 ARE1YCR048W 1833 nt10.79□□□□□ -0.68
VPS55P47111 TIR1YER011W 765 nt10.79□□□□□ -0.68
VPS55P47111 PUN1YLR414C 792 nt10.69□□□□□ -0.7
VPS55P47111 YHR049C-AYHR049C-A 297 nt10.67□□□□□ -0.7
VPS55P47111 YJR018WYJR018W 363 nt10.65□□□□□ -0.7
VPS55P47111 POA1YBR022W 534 nt10.65□□□□□ -0.7
VPS55P47111 YKL097CYKL097C 411 nt10.63□□□□□ -0.71
VPS55P47111 SSA1YAL005C 1929 nt10.62□□□□□ -0.71
VPS55P47111 SHU1YHL006C 453 nt10.56□□□□□ -0.72
VPS55P47111 PTC2YER089C 1395 nt10.52□□□□□ -0.73
VPS55P47111 RPP2BYDR382W 333 nt10.48□□□□□ -0.73
VPS55P47111 YJR120WYJR120W 351 nt10.44□□□□□ -0.74
VPS55P47111 BUD23YCR047C 828 nt10.43□□□□□ -0.74
VPS55P47111 BSC6YOL137W 1494 nt10.42□□□□□ -0.74
VPS55P47111 SRB2YHR041C 633 nt10.4□□□□□ -0.74
VPS55P47111 NAB2YGL122C 1578 nt10.39□□□□□ -0.75
VPS55P47111 YAL037C-BYAL037C-B 975 nt10.36□□□□□ -0.75
VPS55P47111 YGR021WYGR021W 873 nt10.31□□□□□ -0.76
VPS55P47111 INM2YDR287W 879 nt10.29□□□□□ -0.76
VPS55P47111 WWM1YFL010C 636 nt10.29□□□□□ -0.76
VPS55P47111 DAL1YIR027C 1383 nt10.27□□□□□ -0.76
VPS55P47111 BDH2YAL061W 1254 nt10.25□□□□□ -0.77
VPS55P47111 HOM6YJR139C 1080 nt10.23□□□□□ -0.77
VPS55P47111 FPR4YLR449W 1179 nt10.23□□□□□ -0.77
VPS55P47111 FIS1YIL065C 468 nt10.21□□□□□ -0.77
VPS55P47111 YFL021C-AYFL021C-A 855 nt10.17□□□□□ -0.78
VPS55P47111 YBL100CYBL100C 315 nt10.17□□□□□ -0.78
VPS55P47111 MNP1YGL068W 585 nt10.16□□□□□ -0.78
VPS55P47111 YOR139CYOR139C 393 nt10.16□□□□□ -0.78
VPS55P47111 PHO4YFR034C 939 nt10.15□□□□□ -0.78
VPS55P47111 LSM3YLR438C-A 270 nt10.14□□□□□ -0.79
VPS55P47111 NPL3YDR432W 1245 nt10.11□□□□□ -0.79
VPS55P47111 RKM5YLR137W 1104 nt10.08□□□□□ -0.8
VPS55P47111 YOL037CYOL037C 354 nt10.07□□□□□ -0.8
VPS55P47111 TRM9YML014W 840 nt10.06□□□□□ -0.8
VPS55P47111 FUN26YAL022C 1554 nt10.05□□□□□ -0.8
VPS55P47111 SPT5YML010W 3192 nt10□□□□□ -0.81
VPS55P47111 SSA4YER103W 1929 nt10□□□□□ -0.81
VPS55P47111 YPS1YLR120C 1710 nt9.94□□□□□ -0.82
VPS55P47111 CCT6YDR188W 1641 nt9.94□□□□□ -0.82
VPS55P47111 ALF1YNL148C 765 nt9.92□□□□□ -0.82
VPS55P47111 YDR095CYDR095C 411 nt9.89□□□□□ -0.83
VPS55P47111 SUF2tP(AGG)C 72 nt9.89□□□□□ -0.83
VPS55P47111 SUF10tP(AGG)N 72 nt9.89□□□□□ -0.83
VPS55P47111 YHR165W-AYHR165W-A 312 nt9.84□□□□□ -0.83
VPS55P47111 YLR281CYLR281C 468 nt9.79□□□□□ -0.84
VPS55P47111 MEP2YNL142W 1500 nt9.78□□□□□ -0.84
VPS55P47111 tM(CAU)CtM(CAU)C 72 nt9.78□□□□□ -0.84
VPS55P47111 IMT4tM(CAU)E 72 nt9.78□□□□□ -0.84
VPS55P47111 IMT3tM(CAU)J3 72 nt9.78□□□□□ -0.84
VPS55P47111 IMT1tM(CAU)O1 72 nt9.78□□□□□ -0.84
VPS55P47111 IMT2tM(CAU)P 72 nt9.78□□□□□ -0.84
VPS55P47111 WHI5YOR083W 888 nt9.76□□□□□ -0.85
Retrieved 100 of 7,029 protein–RNA pairs in 14.3 ms