RNA–Protein interactions for RNA: YIR017C

MET28, Transcript of bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex, yeast

Gene MET28, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MET28	YIR017C	FPR3	P38911	411 aa	Known RBP	11.97	□□□□□ -0.49
MET28	YIR017C	TRP5	P00931	707 aa	Known RBP	11.96	□□□□□ -0.49
MET28	YIR017C	MSN5	P52918	1224 aa		11.96	□□□□□ -0.49
MET28	YIR017C	SSK22	P25390	1331 aa	Predicted RBP	11.95	□□□□□ -0.5
MET28	YIR017C	SWC3	P31376	625 aa		11.95	□□□□□ -0.5
MET28	YIR017C	BDF2	Q07442	638 aa		11.95	□□□□□ -0.5
MET28	YIR017C	SUP35	P05453	685 aa	Known RBP	11.94	□□□□□ -0.5
MET28	YIR017C	YNG2	P38806	282 aa	Known RBP	11.94	□□□□□ -0.5
MET28	YIR017C	SET1	P38827	1080 aa	Known RBP	11.94	□□□□□ -0.5
MET28	YIR017C	BOI2	P39969	1040 aa		11.94	□□□□□ -0.5
MET28	YIR017C	UBP12	P39538	1254 aa		11.93	□□□□□ -0.5
MET28	YIR017C	ITC1	P53125	1264 aa		11.93	□□□□□ -0.5
MET28	YIR017C	IRC3	Q06683	689 aa		11.93	□□□□□ -0.5
MET28	YIR017C	YKL222C	P35995	705 aa		11.92	□□□□□ -0.5
MET28	YIR017C	PFF1	P38244	976 aa		11.92	□□□□□ -0.5
MET28	YIR017C	FCP1	Q03254	732 aa		11.92	□□□□□ -0.5
MET28	YIR017C	PUF6	Q04373	656 aa	Known RBP	11.92	□□□□□ -0.5
MET28	YIR017C	PSH1	Q12161	406 aa		11.92	□□□□□ -0.5
MET28	YIR017C	POL32	P47110	350 aa		11.91	□□□□□ -0.5
MET28	YIR017C	UTP10	P42945	1769 aa	Known RBP	11.9	□□□□□ -0.5
MET28	YIR017C	EAF6	P47128	113 aa		11.9	□□□□□ -0.5
MET28	YIR017C	CTT1	P06115	562 aa		11.89	□□□□□ -0.51
MET28	YIR017C	SPO1	P53541	631 aa		11.89	□□□□□ -0.51
MET28	YIR017C	MTC5	Q03897	1148 aa		11.89	□□□□□ -0.51
MET28	YIR017C	SYF1	Q04048	859 aa	Predicted RBP	11.89	□□□□□ -0.51
MET28	YIR017C	ERT1	P38140	529 aa		11.88	□□□□□ -0.51
MET28	YIR017C	HGH1	P48362	394 aa	Known RBP	11.88	□□□□□ -0.51
MET28	YIR017C	CWH41	P53008	833 aa		11.88	□□□□□ -0.51
MET28	YIR017C	SIT4	P20604	311 aa		11.86	□□□□□ -0.51
MET28	YIR017C	SNU66	Q12420	587 aa	Predicted RBP	11.86	□□□□□ -0.51
MET28	YIR017C	RPN1	P38764	993 aa	Known RBP	11.85	□□□□□ -0.51
MET28	YIR017C	ERO1	Q03103	563 aa		11.85	□□□□□ -0.51
MET28	YIR017C	SAS4	Q04003	481 aa		11.85	□□□□□ -0.51
MET28	YIR017C	SAC3	P46674	1301 aa		11.85	□□□□□ -0.51
MET28	YIR017C	SMY1	P32364	656 aa	Known RBP	11.84	□□□□□ -0.51
MET28	YIR017C	GCD7	P32502	381 aa	Predicted RBP	11.84	□□□□□ -0.51
MET28	YIR017C	YER156C	P40093	338 aa	Known RBP	11.84	□□□□□ -0.51
MET28	YIR017C	FRD1	P32614	470 aa	Known RBP	11.83	□□□□□ -0.52
MET28	YIR017C	SSF1	P38789	453 aa	Predicted RBP	11.83	□□□□□ -0.52
MET28	YIR017C	UBP16	Q02863	499 aa		11.83	□□□□□ -0.52
MET28	YIR017C	CAF20	P12962	161 aa	Known RBP	11.82	□□□□□ -0.52
MET28	YIR017C	DPH6	Q12429	685 aa		11.82	□□□□□ -0.52
MET28	YIR017C	NMD2	P38798	1089 aa	Known RBP	11.81	□□□□□ -0.52
MET28	YIR017C	ILV3	P39522	585 aa	Known RBP	11.81	□□□□□ -0.52
MET28	YIR017C	NCB2	Q92317	146 aa		11.81	□□□□□ -0.52
MET28	YIR017C	KIN4	Q01919	800 aa		11.8	□□□□□ -0.52
MET28	YIR017C	HXT10	P43581	546 aa		11.79	□□□□□ -0.52
MET28	YIR017C	GRX6	Q12438	231 aa		11.79	□□□□□ -0.52
MET28	YIR017C	SSA1	P10591	642 aa	Known RBP	11.78	□□□□□ -0.52
MET28	YIR017C	NGR1	P32831	672 aa	Known RBP	11.78	□□□□□ -0.52
MET28	YIR017C	PRY3	P47033	881 aa		11.78	□□□□□ -0.52
MET28	YIR017C	SRC1	Q03707	834 aa		11.78	□□□□□ -0.52
MET28	YIR017C	ICP55	P40051	511 aa		11.77	□□□□□ -0.53
MET28	YIR017C	YKU70	P32807	602 aa		11.76	□□□□□ -0.53
MET28	YIR017C	BDP1	P46678	594 aa		11.76	□□□□□ -0.53
MET28	YIR017C	ECM16	Q04217	1267 aa	Known RBP	11.76	□□□□□ -0.53
MET28	YIR017C	THI3	Q07471	609 aa		11.76	□□□□□ -0.53
MET28	YIR017C	MGM1	P32266	881 aa		11.75	□□□□□ -0.53
MET28	YIR017C	GYP5	Q12344	894 aa		11.75	□□□□□ -0.53
MET28	YIR017C	RPS9B	P05755	195 aa	Known RBP	11.74	□□□□□ -0.53
MET28	YIR017C	ICL1	P28240	557 aa	Predicted RBP	11.74	□□□□□ -0.53
MET28	YIR017C	NUG1	P40010	520 aa	Known RBP	11.74	□□□□□ -0.53
MET28	YIR017C	UBX2	Q04228	584 aa		11.74	□□□□□ -0.53
MET28	YIR017C	KRE2	P27809	442 aa		11.73	□□□□□ -0.53
MET28	YIR017C	RFC1	P38630	861 aa	Known RBP	11.73	□□□□□ -0.53
MET28	YIR017C	ADR1	P07248	1323 aa		11.72	□□□□□ -0.53
MET28	YIR017C	TOP1	P04786	769 aa		11.72	□□□□□ -0.53
MET28	YIR017C	SEC18	P18759	758 aa	Known RBP	11.72	□□□□□ -0.53
MET28	YIR017C	RET1	P22276	1149 aa	Known RBP	11.71	□□□□□ -0.53
MET28	YIR017C	SLA1	P32790	1244 aa		11.71	□□□□□ -0.53
MET28	YIR017C	TIF4632	P39936	914 aa	Known RBP	11.71	□□□□□ -0.53
MET28	YIR017C	RPT4	P53549	437 aa	Known RBP	11.71	□□□□□ -0.53
MET28	YIR017C	PMD1	P32634	1753 aa		11.7	□□□□□ -0.54
MET28	YIR017C	SHC1	P39000	512 aa		11.7	□□□□□ -0.54
MET28	YIR017C	YGL242C	P53066	181 aa		11.7	□□□□□ -0.54
MET28	YIR017C	RRI2	Q12348	645 aa		11.7	□□□□□ -0.54
MET28	YIR017C	POM152	P39685	1337 aa		11.69	□□□□□ -0.54
MET28	YIR017C	PDR18	P53756	1333 aa		11.69	□□□□□ -0.54
MET28	YIR017C	SPL2	P38839	148 aa		11.69	□□□□□ -0.54
MET28	YIR017C	MLC1	P53141	149 aa		11.69	□□□□□ -0.54
MET28	YIR017C	SQS1	P53866	767 aa	Known RBP	11.69	□□□□□ -0.54
MET28	YIR017C	NKP2	Q06162	153 aa		11.68	□□□□□ -0.54
MET28	YIR017C	PIF1	P07271	859 aa		11.67	□□□□□ -0.54
MET28	YIR017C	PSF3	Q12146	194 aa		11.67	□□□□□ -0.54
MET28	YIR017C	NOT3	P06102	836 aa	Known RBP	11.66	□□□□□ -0.54
MET28	YIR017C	CDC16	P09798	840 aa		11.66	□□□□□ -0.54
MET28	YIR017C	ECM21	P38167	1117 aa	Known RBP	11.66	□□□□□ -0.54
MET28	YIR017C	FPK1	P53739	893 aa		11.66	□□□□□ -0.54
MET28	YIR017C	YNL193W	P53870	558 aa		11.66	□□□□□ -0.54
MET28	YIR017C	AI2	P03876	854 aa		11.65	□□□□□ -0.54
MET28	YIR017C	IRC4	Q03036	179 aa		11.65	□□□□□ -0.54
MET28	YIR017C	DPL1	Q05567	589 aa		11.65	□□□□□ -0.54
MET28	YIR017C	RPN7	Q06103	429 aa	Known RBP	11.65	□□□□□ -0.54
MET28	YIR017C	ATG20	Q07528	640 aa		11.64	□□□□□ -0.55
MET28	YIR017C	DIP2	Q12220	943 aa	Predicted RBP	11.64	□□□□□ -0.55
MET28	YIR017C	LCB1	P25045	558 aa	Known RBP	11.63	□□□□□ -0.55
MET28	YIR017C	JJJ2	P46997	583 aa		11.63	□□□□□ -0.55
MET28	YIR017C	ALO1	P54783	526 aa	Known RBP	11.63	□□□□□ -0.55
MET28	YIR017C	BRE1	Q07457	700 aa	Known RBP	11.63	□□□□□ -0.55
MET28	YIR017C	MSM1	P22438	575 aa		11.62	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 37.7 ms