Protein–RNA interactions for Protein: P39538

UBP12, Ubiquitin carboxyl-terminal hydrolase 12, yeastyeast

Predictions only

Length 1,254 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP12P39538 YML009W-BYML009W-B 477 nt25.13■■□□□ 1.61
UBP12P39538 NSR1YGR159C 1245 nt24.79■■□□□ 1.56
UBP12P39538 NOP1YDL014W 984 nt24.43■■□□□ 1.5
UBP12P39538 YKL036CYKL036C 393 nt22.72■■□□□ 1.23
UBP12P39538 MDJ1YFL016C 1536 nt21.94■■□□□ 1.1
UBP12P39538 Q0297Q0297 156 nt21.45■■□□□ 1.02
UBP12P39538 SRX1YKL086W 384 nt21.37■■□□□ 1.01
UBP12P39538 YJL027CYJL027C 417 nt21.27■■□□□ 1
UBP12P39538 SCS3YGL126W 1143 nt20.78■□□□□ 0.92
UBP12P39538 YCR051WYCR051W 669 nt20.34■□□□□ 0.85
UBP12P39538 YOL085CYOL085C 342 nt19.7■□□□□ 0.74
UBP12P39538 DBP2YNL112W 1641 nt19.46■□□□□ 0.71
UBP12P39538 PKP1YIL042C 1185 nt19.45■□□□□ 0.7
UBP12P39538 RPP1BYDL130W 321 nt19.26■□□□□ 0.67
UBP12P39538 TRN1tP(UGG)A 72 nt19.23■□□□□ 0.67
UBP12P39538 SUF9tP(UGG)F 72 nt19.23■□□□□ 0.67
UBP12P39538 SUF8tP(UGG)H 72 nt19.23■□□□□ 0.67
UBP12P39538 tP(UGG)LtP(UGG)L 72 nt19.23■□□□□ 0.67
UBP12P39538 SUF7tP(UGG)M 72 nt19.23■□□□□ 0.67
UBP12P39538 tP(UGG)N1tP(UGG)N1 72 nt19.23■□□□□ 0.67
UBP12P39538 tP(UGG)N2tP(UGG)N2 72 nt19.23■□□□□ 0.67
UBP12P39538 tP(UGG)O1tP(UGG)O1 72 nt19.23■□□□□ 0.67
UBP12P39538 SUF11tP(UGG)O2 72 nt19.23■□□□□ 0.67
UBP12P39538 CCC1YLR220W 969 nt19.12■□□□□ 0.65
UBP12P39538 ATS1YAL020C 1002 nt18.63■□□□□ 0.57
UBP12P39538 YBR190WYBR190W 312 nt18.59■□□□□ 0.57
UBP12P39538 SCJ1YMR214W 1134 nt18.52■□□□□ 0.56
UBP12P39538 PET122YER153C 765 nt18.42■□□□□ 0.54
UBP12P39538 RVS167YDR388W 1449 nt18.27■□□□□ 0.52
UBP12P39538 tP(UGG)O3tP(UGG)O3 72 nt18.27■□□□□ 0.52
UBP12P39538 RTC3YHR087W 336 nt18.25■□□□□ 0.51
UBP12P39538 SCR1SCR1 522 nt18.22■□□□□ 0.51
UBP12P39538 RRN5YLR141W 1092 nt17.92■□□□□ 0.46
UBP12P39538 SHR5YOL110W 714 nt17.68■□□□□ 0.42
UBP12P39538 YDJ1YNL064C 1230 nt17.63■□□□□ 0.41
UBP12P39538 RSB1YOR049C 1065 nt17.59■□□□□ 0.41
UBP12P39538 YER088W-BYER088W-B 147 nt17.56■□□□□ 0.4
UBP12P39538 GAR1YHR089C 618 nt17.28■□□□□ 0.36
UBP12P39538 PST2YDR032C 597 nt17.23■□□□□ 0.35
UBP12P39538 DEP1YAL013W 1218 nt17.22■□□□□ 0.35
UBP12P39538 URN1YPR152C 1398 nt17.14■□□□□ 0.33
UBP12P39538 YNL208WYNL208W 600 nt16.89■□□□□ 0.29
UBP12P39538 RPN10YHR200W 807 nt16.84■□□□□ 0.29
UBP12P39538 OPI9YLR338W 858 nt16.82■□□□□ 0.28
UBP12P39538 PUT4YOR348C 1884 nt16.79■□□□□ 0.28
UBP12P39538 SAH1YER043C 1350 nt16.73■□□□□ 0.27
UBP12P39538 TIR1YER011W 765 nt16.67■□□□□ 0.26
UBP12P39538 YKL097CYKL097C 411 nt16.62■□□□□ 0.25
UBP12P39538 ARE1YCR048W 1833 nt16.55■□□□□ 0.24
UBP12P39538 SHU1YHL006C 453 nt16.52■□□□□ 0.24
UBP12P39538 SSA1YAL005C 1929 nt16.47■□□□□ 0.23
UBP12P39538 YJR018WYJR018W 363 nt16.35■□□□□ 0.21
UBP12P39538 YHR049C-AYHR049C-A 297 nt16.33■□□□□ 0.2
UBP12P39538 POA1YBR022W 534 nt16.33■□□□□ 0.2
UBP12P39538 PUN1YLR414C 792 nt16.31■□□□□ 0.2
UBP12P39538 YAL037C-BYAL037C-B 975 nt16.28■□□□□ 0.2
UBP12P39538 SRB2YHR041C 633 nt16.27■□□□□ 0.2
UBP12P39538 YJR120WYJR120W 351 nt16.15■□□□□ 0.18
UBP12P39538 PTC2YER089C 1395 nt16.14■□□□□ 0.17
UBP12P39538 RPP2BYDR382W 333 nt16.02■□□□□ 0.16
UBP12P39538 BUD23YCR047C 828 nt16■□□□□ 0.15
UBP12P39538 WWM1YFL010C 636 nt16■□□□□ 0.15
UBP12P39538 YOR139CYOR139C 393 nt15.96■□□□□ 0.15
UBP12P39538 BSC6YOL137W 1494 nt15.91■□□□□ 0.14
UBP12P39538 HOM6YJR139C 1080 nt15.87■□□□□ 0.13
UBP12P39538 NAB2YGL122C 1578 nt15.87■□□□□ 0.13
UBP12P39538 MNP1YGL068W 585 nt15.86■□□□□ 0.13
UBP12P39538 YGR021WYGR021W 873 nt15.86■□□□□ 0.13
UBP12P39538 NPL3YDR432W 1245 nt15.76■□□□□ 0.11
UBP12P39538 BDH2YAL061W 1254 nt15.74■□□□□ 0.11
UBP12P39538 FPR4YLR449W 1179 nt15.73■□□□□ 0.11
UBP12P39538 SSA3YBL075C 1950 nt15.71■□□□□ 0.11
UBP12P39538 INM2YDR287W 879 nt15.71■□□□□ 0.11
UBP12P39538 DAL1YIR027C 1383 nt15.7■□□□□ 0.1
UBP12P39538 YFL021C-AYFL021C-A 855 nt15.67■□□□□ 0.1
UBP12P39538 FIS1YIL065C 468 nt15.66■□□□□ 0.1
UBP12P39538 RKM5YLR137W 1104 nt15.63■□□□□ 0.09
UBP12P39538 YBL100CYBL100C 315 nt15.61■□□□□ 0.09
UBP12P39538 PHO4YFR034C 939 nt15.56■□□□□ 0.08
UBP12P39538 YOL037CYOL037C 354 nt15.56■□□□□ 0.08
UBP12P39538 LSM3YLR438C-A 270 nt15.55■□□□□ 0.08
UBP12P39538 FUN26YAL022C 1554 nt15.45■□□□□ 0.06
UBP12P39538 TRM9YML014W 840 nt15.44■□□□□ 0.06
UBP12P39538 tM(CAU)CtM(CAU)C 72 nt15.33■□□□□ 0.04
UBP12P39538 IMT4tM(CAU)E 72 nt15.33■□□□□ 0.04
UBP12P39538 IMT3tM(CAU)J3 72 nt15.33■□□□□ 0.04
UBP12P39538 IMT1tM(CAU)O1 72 nt15.33■□□□□ 0.04
UBP12P39538 IMT2tM(CAU)P 72 nt15.33■□□□□ 0.04
UBP12P39538 CCT6YDR188W 1641 nt15.25■□□□□ 0.03
UBP12P39538 YLR281CYLR281C 468 nt15.24■□□□□ 0.03
UBP12P39538 WHI5YOR083W 888 nt15.19■□□□□ 0.02
UBP12P39538 YPS1YLR120C 1710 nt15.19■□□□□ 0.02
UBP12P39538 PUS2YGL063W 1113 nt15.18■□□□□ 0.02
UBP12P39538 ALF1YNL148C 765 nt15.17■□□□□ 0.02
UBP12P39538 YDR095CYDR095C 411 nt15.11■□□□□ 0.01
UBP12P39538 SUF2tP(AGG)C 72 nt15.08■□□□□ 0
UBP12P39538 SUF10tP(AGG)N 72 nt15.08■□□□□ 0
UBP12P39538 YHR165W-AYHR165W-A 312 nt15.03■□□□□ -0
UBP12P39538 YLR154C-GYLR154C-G 150 nt15.03■□□□□ -0
UBP12P39538 Q0182Q0182 405 nt15.02■□□□□ -0
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms