RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeastyeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT3YDR392W TY1A-NL2Q12470 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-GR2Q12485 440 aa8.17□□□□□ -1.1
SPT3YDR392W SRB8P25648 1427 aa8.16□□□□□ -1.1
SPT3YDR392W MAL31P38156 614 aa8.16□□□□□ -1.1
SPT3YDR392W SNF2P22082 1703 aa8.13□□□□□ -1.11
SPT3YDR392W MAM3Q12296 706 aa8.13□□□□□ -1.11
SPT3YDR392W CFT1Q06632 1357 aaKnown RBP8.12□□□□□ -1.11
SPT3YDR392W CLB5P30283 435 aa8.12□□□□□ -1.11
SPT3YDR392W CST6P40535 587 aa8.12□□□□□ -1.11
SPT3YDR392W RRN7P40992 514 aa8.11□□□□□ -1.11
SPT3YDR392W SAS10Q12136 610 aaPredicted RBP8.11□□□□□ -1.11
SPT3YDR392W DMA1P38823 416 aa8.1□□□□□ -1.11
SPT3YDR392W SQS1P53866 767 aaKnown RBP8.1□□□□□ -1.11
SPT3YDR392W YVH1Q02256 364 aaKnown RBP8.1□□□□□ -1.11
SPT3YDR392W LAM6Q08001 693 aa8.1□□□□□ -1.11
SPT3YDR392W DSF2P38213 736 aa8.09□□□□□ -1.11
SPT3YDR392W DOT5P40553 215 aa8.09□□□□□ -1.11
SPT3YDR392W YNR029CP53729 429 aaKnown RBP8.09□□□□□ -1.11
SPT3YDR392W KEX2P13134 814 aa8.08□□□□□ -1.12
SPT3YDR392W GCR2Q01722 534 aa8.07□□□□□ -1.12
SPT3YDR392W FRK1Q03002 865 aaPredicted RBP8.07□□□□□ -1.12
SPT3YDR392W RGA1P39083 1007 aa8.06□□□□□ -1.12
SPT3YDR392W FKS3Q04952 1785 aa8.06□□□□□ -1.12
SPT3YDR392W KRE5P22023 1365 aa8.06□□□□□ -1.12
SPT3YDR392W PRP40P33203 583 aaKnown RBP8.05□□□□□ -1.12
SPT3YDR392W BDP1P46678 594 aa8.05□□□□□ -1.12
SPT3YDR392W EAF6P47128 113 aa8.05□□□□□ -1.12
SPT3YDR392W ERF2Q06551 359 aa8.05□□□□□ -1.12
SPT3YDR392W AIR1P40507 360 aaKnown RBP8.04□□□□□ -1.12
SPT3YDR392W IES2P40154 320 aa8.03□□□□□ -1.12
SPT3YDR392W BRE2P43132 505 aa8.03□□□□□ -1.12
SPT3YDR392W CLA4P48562 842 aa8.03□□□□□ -1.12
SPT3YDR392W RTF1P53064 558 aa8.03□□□□□ -1.12
SPT3YDR392W RIA1P53893 1110 aa8.03□□□□□ -1.12
SPT3YDR392W ROM2P51862 1356 aaKnown RBP8.02□□□□□ -1.13
SPT3YDR392W CDC4P07834 779 aa8.02□□□□□ -1.13
SPT3YDR392W SPB4P25808 606 aaPredicted RBP8.02□□□□□ -1.13
SPT3YDR392W HED1Q03937 162 aa8.02□□□□□ -1.13
SPT3YDR392W TEA1P47988 759 aa8.01□□□□□ -1.13
SPT3YDR392W NUP42P49686 430 aaKnown RBP8□□□□□ -1.13
SPT3YDR392W YNL115CP53925 644 aa8□□□□□ -1.13
SPT3YDR392W FOX2Q02207 900 aaKnown RBP8□□□□□ -1.13
SPT3YDR392W YLR278CQ05854 1341 aa8□□□□□ -1.13
SPT3YDR392W RAD9P14737 1309 aa7.98□□□□□ -1.13
SPT3YDR392W SIT4P20604 311 aa7.97□□□□□ -1.13
SPT3YDR392W MRX12P47084 519 aa7.97□□□□□ -1.13
SPT3YDR392W TUB4P53378 473 aa7.97□□□□□ -1.13
SPT3YDR392W SRF1Q12516 437 aa7.97□□□□□ -1.13
SPT3YDR392W SPT7P35177 1332 aa7.97□□□□□ -1.13
SPT3YDR392W MOD5P07884 428 aa7.96□□□□□ -1.14
SPT3YDR392W PRP45P28004 379 aaPredicted RBP7.96□□□□□ -1.14
SPT3YDR392W PAC1P39946 494 aaKnown RBP7.96□□□□□ -1.14
SPT3YDR392W YER156CP40093 338 aaKnown RBP7.96□□□□□ -1.14
SPT3YDR392W ALD3P54114 506 aa7.96□□□□□ -1.14
SPT3YDR392W PSK1P31374 1356 aa7.96□□□□□ -1.14
SPT3YDR392W PAM1P37304 830 aaKnown RBP7.95□□□□□ -1.14
SPT3YDR392W AGE1Q04412 482 aa7.95□□□□□ -1.14
SPT3YDR392W RGA2Q06407 1009 aa7.95□□□□□ -1.14
SPT3YDR392W DIT2P21595 489 aa7.92□□□□□ -1.14
SPT3YDR392W SAP155P43612 1002 aa7.92□□□□□ -1.14
SPT3YDR392W NIS1P53939 407 aa7.91□□□□□ -1.14
SPT3YDR392W TY3B-IQ7LHG5 1498 aaKnown RBP7.91□□□□□ -1.14
SPT3YDR392W CTT1P06115 562 aa7.9□□□□□ -1.14
SPT3YDR392W YEF3P16521 1044 aaKnown RBP7.9□□□□□ -1.14
SPT3YDR392W KXD1P53158 218 aa7.9□□□□□ -1.14
SPT3YDR392W FPK1P53739 893 aa7.9□□□□□ -1.14
SPT3YDR392W YMR084WA2P2R3 262 aa7.89□□□□□ -1.15
SPT3YDR392W GBP2P25555 427 aaKnown RBP RIP-Chip data7.89□□□□□ -1.15not detected
SPT3YDR392W YPL062WQ02781 134 aa7.89□□□□□ -1.15
SPT3YDR392W GAR1P28007 205 aaKnown RBP7.88□□□□□ -1.15
SPT3YDR392W ASH1P34233 588 aa7.87□□□□□ -1.15
SPT3YDR392W MSN5P52918 1224 aa7.87□□□□□ -1.15
SPT3YDR392W TIF6Q12522 245 aaKnown RBP7.87□□□□□ -1.15
SPT3YDR392W MHP1P43638 1398 aa7.86□□□□□ -1.15
SPT3YDR392W TPD3P31383 635 aa7.86□□□□□ -1.15
SPT3YDR392W HST3P53687 447 aa7.86□□□□□ -1.15
SPT3YDR392W AFT1P22149 690 aa7.85□□□□□ -1.15
SPT3YDR392W SLY41P22215 453 aa7.85□□□□□ -1.15
SPT3YDR392W MET32Q12041 191 aa7.84□□□□□ -1.15
SPT3YDR392W MET22P32179 357 aa7.83□□□□□ -1.16
SPT3YDR392W HXT10P43581 546 aa7.83□□□□□ -1.16
SPT3YDR392W NCS6P53088 359 aa7.83□□□□□ -1.16
SPT3YDR392W APC1P53886 1748 aa7.82□□□□□ -1.16
SPT3YDR392W NUP192P47054 1683 aa7.82□□□□□ -1.16
SPT3YDR392W TAO3P40468 2376 aa7.81□□□□□ -1.16
SPT3YDR392W PUS6P53294 404 aa7.81□□□□□ -1.16
SPT3YDR392W TOR2P32600 2474 aaKnown RBP7.8□□□□□ -1.16
SPT3YDR392W TY4B-HP0C2J7 1802 aa7.8□□□□□ -1.16
SPT3YDR392W TY4B-JP47024 1803 aa7.8□□□□□ -1.16
SPT3YDR392W THS1P04801 734 aaKnown RBP7.8□□□□□ -1.16
SPT3YDR392W SYH1Q02875 849 aaKnown RBP7.8□□□□□ -1.16
SPT3YDR392W ATF2P53296 535 aa7.79□□□□□ -1.16
SPT3YDR392W PDC1P06169 563 aaKnown RBP7.78□□□□□ -1.16
SPT3YDR392W HST2P53686 357 aa7.78□□□□□ -1.16
SPT3YDR392W TBF1Q02457 562 aa7.78□□□□□ -1.16
SPT3YDR392W YDR444WQ04093 687 aa7.78□□□□□ -1.16
SPT3YDR392W YRF1-3P0CX14 1859 aa7.78□□□□□ -1.16
SPT3YDR392W YRF1-7P0CX15 1859 aa7.78□□□□□ -1.16
SPT3YDR392W YRF1-6P53819 1859 aa7.78□□□□□ -1.16
SPT3YDR392W TAF5P38129 798 aa7.77□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 29.7 ms