RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	ACP1	P32463	125 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	BLI1	P35727	113 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	EXO84	P38261	753 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	ILV3	P39522	585 aa	Known RBP	4.92	□□□□□ -1.62
SSB1	YDL229W	BOI2	P39969	1040 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	BTN2	P53286	410 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	CLP1	Q08685	445 aa	Predicted RBP	4.92	□□□□□ -1.62
SSB1	YDL229W	NKP1	Q12493	238 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	YOL087C	Q99247	1116 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	EDE1	P34216	1381 aa		4.92	□□□□□ -1.62
SSB1	YDL229W	VMA4	P22203	233 aa	Known RBP	4.91	□□□□□ -1.62
SSB1	YDL229W	BUD14	P27637	709 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	KNS1	P32350	737 aa	Predicted RBP	4.91	□□□□□ -1.62
SSB1	YDL229W	YHR218W	P38899	603 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	INP52	P50942	1183 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	SPO19	Q03029	223 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	UTP13	Q05946	817 aa	Known RBP	4.91	□□□□□ -1.62
SSB1	YDL229W	ARR2	Q06597	130 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	CIR2	Q08822	631 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	ERP4	Q12450	207 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	RPO31	P04051	1460 aa		4.91	□□□□□ -1.62
SSB1	YDL229W	PDI1	P17967	522 aa	Known RBP	4.9	□□□□□ -1.62
SSB1	YDL229W	MAK11	P20484	414 aa	Known RBP	4.9	□□□□□ -1.62
SSB1	YDL229W	TIF3	P34167	436 aa	Known RBP	4.9	□□□□□ -1.62
SSB1	YDL229W	ERC1	P38767	581 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	TOM71	P38825	639 aa	Known RBP	4.9	□□□□□ -1.62
SSB1	YDL229W	UBP12	P39538	1254 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	VHR2	P40041	505 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	NDC80	P40460	691 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	YIR042C	P40586	236 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	SUM1	P46676	1062 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	KEL2	P50090	882 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	YNL050C	P53952	270 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	PMT7	Q06644	662 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	SLX4	Q12098	748 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	POL1	P13382	1468 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	UFD4	P33202	1483 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	RTC1	Q08281	1341 aa		4.9	□□□□□ -1.62
SSB1	YDL229W	BPT1	P14772	1559 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	HMG1	P12683	1054 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	EFB1	P32471	206 aa	Known RBP	4.9	□□□□□ -1.63
SSB1	YDL229W	YEL1	P34225	687 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	MAL31	P38156	614 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	RPG1	P38249	964 aa	Known RBP	4.9	□□□□□ -1.63
SSB1	YDL229W	CIC1	P38779	376 aa	Known RBP	4.9	□□□□□ -1.63
SSB1	YDL229W	TPM2	P40414	161 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	SDS3	P40505	327 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	GPI8	P49018	411 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	DSL1	P53847	754 aa		4.9	□□□□□ -1.63
SSB1	YDL229W	DBP10	Q12389	995 aa	Known RBP	4.9	□□□□□ -1.63
SSB1	YDL229W	ATG19	P35193	415 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	RPC37	P36121	282 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	OCA5	P38738	679 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	NOC2	P39744	710 aa	Known RBP	4.89	□□□□□ -1.63
SSB1	YDL229W	ARB1	P40024	610 aa	Known RBP	4.89	□□□□□ -1.63
SSB1	YDL229W	VPS27	P40343	622 aa	Known RBP	4.89	□□□□□ -1.63
SSB1	YDL229W	YRB1	P41920	201 aa	Known RBP	4.89	□□□□□ -1.63
SSB1	YDL229W	SHE4	P51534	789 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	ADE12	P80210	433 aa	Known RBP	4.89	□□□□□ -1.63
SSB1	YDL229W	YMR102C	Q03177	834 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	ARO80	Q04052	950 aa		4.89	□□□□□ -1.63
SSB1	YDL229W	PEP12	P32854	288 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	COY1	P34237	679 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	PAM1	P37304	830 aa	Known RBP	4.88	□□□□□ -1.63
SSB1	YDL229W	YIR014W	P40570	242 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	YGL140C	P53120	1219 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	RSM28	Q03430	361 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SPO71	Q03868	1245 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	YPR097W	Q06839	1073 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	YDL073W	Q07454	984 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SSF2	Q12153	453 aa	Predicted RBP	4.88	□□□□□ -1.63
SSB1	YDL229W	RAD50	P12753	1312 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	YCF1	P39109	1515 aa	Known RBP	4.88	□□□□□ -1.63
SSB1	YDL229W	MAK16	P10962	306 aa	Predicted RBP	4.88	□□□□□ -1.63
SSB1	YDL229W	DLD1	P32891	587 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	VPS41	P38959	992 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SHC1	P39000	512 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SLX8	P40072	274 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SPR3	P41901	512 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	IST1	P53843	298 aa	Predicted RBP	4.88	□□□□□ -1.63
SSB1	YDL229W	HMI1	Q12039	706 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	SRB8	P25648	1427 aa		4.88	□□□□□ -1.63
SSB1	YDL229W	MFT1	P33441	392 aa	Known RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	TOM20	P35180	183 aa		4.87	□□□□□ -1.63
SSB1	YDL229W	TTI1	P36097	1038 aa		4.87	□□□□□ -1.63
SSB1	YDL229W	ATG14	P38270	344 aa		4.87	□□□□□ -1.63
SSB1	YDL229W	YGL081W	P53156	320 aa		4.87	□□□□□ -1.63
SSB1	YDL229W	YNL035C	P53962	389 aa	Known RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	SRP1	Q02821	542 aa	Known RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	VMS1	Q04311	632 aa	Known RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	TMA64	Q04600	565 aa	Known RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	PHM6	Q05637	104 aa		4.87	□□□□□ -1.63
SSB1	YDL229W	SSQ1	Q05931	657 aa	Predicted RBP	4.87	□□□□□ -1.63
SSB1	YDL229W	CYB2	P00175	591 aa		4.86	□□□□□ -1.63
SSB1	YDL229W	SIT4	P20604	311 aa		4.86	□□□□□ -1.63
SSB1	YDL229W	STE11	P23561	717 aa		4.86	□□□□□ -1.63
SSB1	YDL229W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
SSB1	YDL229W	MSP1	P28737	362 aa		4.86	□□□□□ -1.63
SSB1	YDL229W	TBS1	P38114	1094 aa		4.86	□□□□□ -1.63
SSB1	YDL229W	RKM3	P38222	552 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 26.4 ms