RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeastyeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM1YBR263W AGE1Q04412 482 aa7.86□□□□□ -1.15
SHM1YBR263W RAD9P14737 1309 aa7.85□□□□□ -1.15
SHM1YBR263W GCR2Q01722 534 aa7.85□□□□□ -1.15
SHM1YBR263W MOD5P07884 428 aa7.84□□□□□ -1.15
SHM1YBR263W MRX12P47084 519 aa7.84□□□□□ -1.15
SHM1YBR263W NUP42P49686 430 aaKnown RBP7.84□□□□□ -1.15
SHM1YBR263W RIA1P53893 1110 aa7.84□□□□□ -1.15
SHM1YBR263W HED1Q03937 162 aa7.84□□□□□ -1.15
SHM1YBR263W CAB1Q04430 367 aa7.84□□□□□ -1.15
SHM1YBR263W RTF1P53064 558 aa7.83□□□□□ -1.16
SHM1YBR263W TUB4P53378 473 aa7.83□□□□□ -1.16
SHM1YBR263W YNL115CP53925 644 aa7.81□□□□□ -1.16
SHM1YBR263W SIT4P20604 311 aa7.81□□□□□ -1.16
SHM1YBR263W ESL2P36168 1195 aa7.81□□□□□ -1.16
SHM1YBR263W TAF5P38129 798 aa7.81□□□□□ -1.16
SHM1YBR263W YNR029CP53729 429 aaKnown RBP7.81□□□□□ -1.16
SHM1YBR263W TEA1P47988 759 aa7.8□□□□□ -1.16
SHM1YBR263W DIT2P21595 489 aa7.78□□□□□ -1.16
SHM1YBR263W YPL062WQ02781 134 aa7.78□□□□□ -1.16
SHM1YBR263W SPB4P25808 606 aaPredicted RBP7.77□□□□□ -1.17
SHM1YBR263W NIS1P53939 407 aa7.77□□□□□ -1.17
SHM1YBR263W TAF8Q03750 510 aa7.76□□□□□ -1.17
SHM1YBR263W GAR1P28007 205 aaKnown RBP7.75□□□□□ -1.17
SHM1YBR263W PUS5Q06244 254 aa7.75□□□□□ -1.17
SHM1YBR263W MET32Q12041 191 aa7.75□□□□□ -1.17
SHM1YBR263W TY3B-IQ7LHG5 1498 aaKnown RBP7.73□□□□□ -1.17
SHM1YBR263W NAP1P25293 417 aaKnown RBP7.72□□□□□ -1.17
SHM1YBR263W MET22P32179 357 aa7.72□□□□□ -1.17
SHM1YBR263W ASH1P34233 588 aa7.72□□□□□ -1.17
SHM1YBR263W KIP3P53086 805 aaKnown RBP7.72□□□□□ -1.17
SHM1YBR263W SPE2P21182 396 aa7.7□□□□□ -1.18
SHM1YBR263W AFT1P22149 690 aa7.69□□□□□ -1.18
SHM1YBR263W FPK1P53739 893 aa7.69□□□□□ -1.18
SHM1YBR263W ORC1P54784 914 aaPredicted RBP7.69□□□□□ -1.18
SHM1YBR263W GBP2P25555 427 aaKnown RBP RIP-Chip data7.68□□□□□ -1.18not detected
SHM1YBR263W TPD3P31383 635 aa7.68□□□□□ -1.18
SHM1YBR263W KXD1P53158 218 aa7.68□□□□□ -1.18
SHM1YBR263W RCM1P53972 490 aa7.68□□□□□ -1.18
SHM1YBR263W CPS1P27614 576 aa7.68□□□□□ -1.18
SHM1YBR263W ENV9Q08651 330 aa7.68□□□□□ -1.18
SHM1YBR263W YLR419WQ06698 1435 aaKnown RBP7.67□□□□□ -1.18
SHM1YBR263W SLY41P22215 453 aa7.67□□□□□ -1.18
SHM1YBR263W PPH3P32345 308 aa7.67□□□□□ -1.18
SHM1YBR263W HST3P53687 447 aa7.67□□□□□ -1.18
SHM1YBR263W HXT10P43581 546 aa7.66□□□□□ -1.18
SHM1YBR263W PDC1P06169 563 aaKnown RBP7.65□□□□□ -1.18
SHM1YBR263W RRD1P40454 393 aaKnown RBP7.65□□□□□ -1.18
SHM1YBR263W YDR444WQ04093 687 aa7.63□□□□□ -1.19
SHM1YBR263W CHZ1P40019 153 aaPredicted RBP7.62□□□□□ -1.19
SHM1YBR263W PSK1P31374 1356 aa7.62□□□□□ -1.19
SHM1YBR263W SCJ1P25303 377 aa7.61□□□□□ -1.19
SHM1YBR263W POL5P39985 1022 aaKnown RBP7.61□□□□□ -1.19
SHM1YBR263W PUS6P53294 404 aa7.61□□□□□ -1.19
SHM1YBR263W SYH1Q02875 849 aaKnown RBP7.61□□□□□ -1.19
SHM1YBR263W YJR115WP47152 169 aa7.6□□□□□ -1.19
SHM1YBR263W HST2P53686 357 aa7.6□□□□□ -1.19
SHM1YBR263W APP1P53933 587 aa7.6□□□□□ -1.19
SHM1YBR263W RPA14P50106 137 aa7.59□□□□□ -1.19
SHM1YBR263W LCB5Q06147 687 aaKnown RBP7.59□□□□□ -1.19
SHM1YBR263W ADE6P38972 1358 aaKnown RBP7.58□□□□□ -1.2
SHM1YBR263W YPR097WQ06839 1073 aa7.58□□□□□ -1.2
SHM1YBR263W YDL206WQ12424 762 aa7.58□□□□□ -1.2
SHM1YBR263W YML133CQ03099 1374 aa7.57□□□□□ -1.2
SHM1YBR263W YLL067CQ07888 1374 aa7.57□□□□□ -1.2
SHM1YBR263W YLL066CQ99208 1374 aa7.57□□□□□ -1.2
SHM1YBR263W ALR1Q08269 859 aa7.57□□□□□ -1.2
SHM1YBR263W SCT1P32784 759 aa7.56□□□□□ -1.2
SHM1YBR263W TBF1Q02457 562 aa7.56□□□□□ -1.2
SHM1YBR263W LEU2P04173 364 aaPredicted RBP7.55□□□□□ -1.2
SHM1YBR263W TRM1P15565 570 aaKnown RBP7.55□□□□□ -1.2
SHM1YBR263W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.55□□□□□ -1.2not detected
SHM1YBR263W MSB3P48566 633 aaPredicted RBP7.55□□□□□ -1.2
SHM1YBR263W ENT1Q12518 454 aa7.55□□□□□ -1.2
SHM1YBR263W PRP45P28004 379 aaPredicted RBP7.55□□□□□ -1.2
SHM1YBR263W ATF2P53296 535 aa7.55□□□□□ -1.2
SHM1YBR263W MMP1Q12372 583 aa7.55□□□□□ -1.2
SHM1YBR263W MHP1P43638 1398 aa7.54□□□□□ -1.2
SHM1YBR263W MTR4P47047 1073 aaKnown RBP7.54□□□□□ -1.2
SHM1YBR263W PRP43P53131 767 aaKnown RBP7.54□□□□□ -1.2
SHM1YBR263W YDL176WQ12027 708 aa7.54□□□□□ -1.2
SHM1YBR263W PRP5P21372 849 aaPredicted RBP7.53□□□□□ -1.2
SHM1YBR263W KIP2P28743 706 aa7.52□□□□□ -1.21
SHM1YBR263W GLN1P32288 370 aaKnown RBP7.52□□□□□ -1.21
SHM1YBR263W RRP5Q05022 1729 aaKnown RBP7.52□□□□□ -1.21
SHM1YBR263W TY4B-HP0C2J7 1802 aa7.51□□□□□ -1.21
SHM1YBR263W TY4B-JP47024 1803 aa7.51□□□□□ -1.21
SHM1YBR263W RPS24AP0CX31 135 aaKnown RBP7.51□□□□□ -1.21
SHM1YBR263W RPS24BP0CX32 135 aaKnown RBP7.51□□□□□ -1.21
SHM1YBR263W CSE4P36012 229 aa7.51□□□□□ -1.21
SHM1YBR263W YNR021WP53723 404 aaKnown RBP7.51□□□□□ -1.21
SHM1YBR263W PDS5Q04264 1277 aa7.51□□□□□ -1.21
SHM1YBR263W ESS1P22696 170 aa7.5□□□□□ -1.21
SHM1YBR263W IXR1P33417 597 aa7.5□□□□□ -1.21
SHM1YBR263W UGA3P26370 528 aa7.49□□□□□ -1.21
SHM1YBR263W GLC3P32775 704 aa7.49□□□□□ -1.21
SHM1YBR263W MRT4P33201 236 aaKnown RBP7.49□□□□□ -1.21
SHM1YBR263W PTK2P47116 818 aaKnown RBP7.48□□□□□ -1.21
SHM1YBR263W YJU3P28321 313 aa7.47□□□□□ -1.21
SHM1YBR263W IMH1Q06704 911 aaKnown RBP7.47□□□□□ -1.21
SHM1YBR263W TYW1Q08960 810 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 42.3 ms