RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PRKAR2AP13861 404 aaKnown RBP9.89□□□□□ -0.83
VPS13C-206ENST00000558338 SPAG9O60271 1321 aaKnown RBP9.89□□□□□ -0.83
VPS13C-206ENST00000558338 TRAPPC8Q9Y2L5 1435 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 ATP7AQ04656 1500 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 SPHKAPQ2M3C7 1700 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 KLHL34Q8N239 644 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 STAC3Q96MF2 364 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 COL17A1Q9UMD9 1497 aaPredicted RBP9.89□□□□□ -0.83
VPS13C-206ENST00000558338 NEURL4Q96JN8 1562 aa9.89□□□□□ -0.83
VPS13C-206ENST00000558338 CFAP74Q9C0B2 1584 aa9.88□□□□□ -0.83
VPS13C-206ENST00000558338 C19orf67A6NJJ6 358 aa9.88□□□□□ -0.83
VPS13C-206ENST00000558338 FAM9BQ8IZU0 186 aa9.88□□□□□ -0.83
VPS13C-206ENST00000558338 FANCAO15360 1455 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 KANK1Q14678 1352 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 ST20-MTHFSA0A0A6YYL1 179 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 GABBR2O75899 941 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 RALBP1Q15311 655 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 C14orf37Q86TY3 774 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 POLR3GLQ9BT43 218 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 BRD4O60885 1362 aaPredicted RBP9.87□□□□□ -0.83
VPS13C-206ENST00000558338 CCDC184Q52MB2 194 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 TSHZ2Q9NRE2 1034 aa9.87□□□□□ -0.83
VPS13C-206ENST00000558338 VWDEQ8N2E2 1590 aa9.86□□□□□ -0.83
VPS13C-206ENST00000558338 MADDQ8WXG6 1647 aa9.86□□□□□ -0.83
VPS13C-206ENST00000558338 MYBBP1AQ9BQG0 1328 aaKnown RBP9.85□□□□□ -0.83
VPS13C-206ENST00000558338 PTPRTO14522 1441 aa9.85□□□□□ -0.83
VPS13C-206ENST00000558338 SMG6Q86US8 1419 aaKnown RBP9.85□□□□□ -0.83
VPS13C-206ENST00000558338 WASHC2CQ9Y4E1 1318 aa9.85□□□□□ -0.83
VPS13C-206ENST00000558338 KIAA1210Q9ULL0 1709 aa9.85□□□□□ -0.83
VPS13C-206ENST00000558338 ADGRL1O94910 1474 aa9.85□□□□□ -0.83
VPS13C-206ENST00000558338 IQGAP1P46940 1657 aa9.84□□□□□ -0.83
VPS13C-206ENST00000558338 TMC1Q8TDI8 760 aa9.83□□□□□ -0.84
VPS13C-206ENST00000558338 ZMYM4Q5VZL5 1548 aa9.83□□□□□ -0.84
VPS13C-206ENST00000558338 CLTCL1P53675 1640 aa9.83□□□□□ -0.84
VPS13C-206ENST00000558338 RGL3Q3MIN7 710 aa9.83□□□□□ -0.84
VPS13C-206ENST00000558338 SCAPERQ9BY12 1400 aa9.83□□□□□ -0.84
VPS13C-206ENST00000558338 ASXL2Q76L83 1435 aa9.82□□□□□ -0.84
VPS13C-206ENST00000558338 INSRP06213 1382 aa9.82□□□□□ -0.84
VPS13C-206ENST00000558338 LRPPRCP42704 1394 aaKnown RBP9.82□□□□□ -0.84
VPS13C-206ENST00000558338 PARD3Q8TEW0 1356 aa9.82□□□□□ -0.84
VPS13C-206ENST00000558338 SPDYE2BA6NHP3 402 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 SPDYE6P0CI01 402 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 TMF1P82094 1093 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 SPDYE2Q495Y8 402 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 ZNF518AQ6AHZ1 1483 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 LMTK2Q8IWU2 1503 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 MROH1Q8NDA8 1641 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 PNISRQ8TF01 805 aaKnown RBP9.81□□□□□ -0.84
VPS13C-206ENST00000558338 PPP4R2Q9NY27 417 aa9.81□□□□□ -0.84
VPS13C-206ENST00000558338 EFCAB6Q5THR3 1501 aa9.8□□□□□ -0.84
VPS13C-206ENST00000558338 NLRP13Q86W25 1043 aa9.8□□□□□ -0.84
VPS13C-206ENST00000558338 NUDCQ9Y266 331 aa9.8□□□□□ -0.84
VPS13C-206ENST00000558338 EIF3AQ14152 1382 aaKnown RBP9.8□□□□□ -0.84
VPS13C-206ENST00000558338 MYOM2P54296 1465 aa9.8□□□□□ -0.84
VPS13C-206ENST00000558338 KIDINS220Q9ULH0 1771 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 SYNMO15061 1565 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 SCAF11Q99590 1463 aaKnown RBP9.79□□□□□ -0.84
VPS13C-206ENST00000558338 CDCA8Q53HL2 280 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 AFAP1Q8N556 730 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 KIF1BO60333 1816 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 NBPF1Q3BBV0 1214 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 TESK2Q96S53 571 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 CLEC11AQ9Y240 323 aa9.79□□□□□ -0.84
VPS13C-206ENST00000558338 DISP3Q9P2K9 1392 aa9.78□□□□□ -0.84
VPS13C-206ENST00000558338 IFT172Q9UG01 1749 aa9.78□□□□□ -0.84
VPS13C-206ENST00000558338 MAP3K4Q9Y6R4 1608 aa9.77□□□□□ -0.84
VPS13C-206ENST00000558338 NPM1P06748 294 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS13C-206ENST00000558338 SPDYE1Q8NFV5 336 aaPredicted RBP9.77□□□□□ -0.85
VPS13C-206ENST00000558338 HECW2Q9P2P5 1572 aa9.77□□□□□ -0.85
VPS13C-206ENST00000558338 POGZQ7Z3K3 1410 aa9.75□□□□□ -0.85
VPS13C-206ENST00000558338 KDM5AP29375 1690 aaKnown RBP9.75□□□□□ -0.85
VPS13C-206ENST00000558338 PPRC1Q5VV67 1664 aaKnown RBP9.75□□□□□ -0.85
VPS13C-206ENST00000558338 MLH3Q9UHC1 1453 aa9.75□□□□□ -0.85
VPS13C-206ENST00000558338 MYT1LQ9UL68 1186 aa9.75□□□□□ -0.85
VPS13C-206ENST00000558338 RNF123Q5XPI4 1314 aa9.75□□□□□ -0.85
VPS13C-206ENST00000558338 KIF3BO15066 747 aa9.74□□□□□ -0.85
VPS13C-206ENST00000558338 PER1O15534 1290 aaPredicted RBP9.74□□□□□ -0.85
VPS13C-206ENST00000558338 PDE3BQ13370 1112 aa9.74□□□□□ -0.85
VPS13C-206ENST00000558338 ABCA6Q8N139 1617 aa9.74□□□□□ -0.85
VPS13C-206ENST00000558338 MYO3AQ8NEV4 1616 aa9.74□□□□□ -0.85
VPS13C-206ENST00000558338 ADGRB3O60242 1522 aa9.73□□□□□ -0.85
VPS13C-206ENST00000558338 IRX6P78412 446 aaPredicted RBP9.73□□□□□ -0.85
VPS13C-206ENST00000558338 CNGB1Q14028 1251 aaPredicted RBP9.73□□□□□ -0.85
VPS13C-206ENST00000558338 NPM2Q86SE8 214 aaKnown RBP9.73□□□□□ -0.85
VPS13C-206ENST00000558338 BLMP54132 1417 aaPredicted RBP9.73□□□□□ -0.85
VPS13C-206ENST00000558338 CD109Q6YHK3 1445 aa9.73□□□□□ -0.85
VPS13C-206ENST00000558338 NEO1Q92859 1461 aa9.73□□□□□ -0.85
VPS13C-206ENST00000558338 SETBP1Q9Y6X0 1596 aa9.73□□□□□ -0.85
VPS13C-206ENST00000558338 NRXN1Q9ULB1 1477 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 MROH2AA6NES4 1674 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 MYOM1P52179 1685 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 PANK3Q9H999 370 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 NPC1L1Q9UHC9 1359 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 ASXL1Q8IXJ9 1541 aa9.72□□□□□ -0.85
VPS13C-206ENST00000558338 RBM19Q9Y4C8 960 aaKnown RBP9.71□□□□□ -0.85
VPS13C-206ENST00000558338 ZC3H13Q5T200 1668 aaKnown RBP9.71□□□□□ -0.86
VPS13C-206ENST00000558338 FRMPD1Q5SYB0 1578 aa9.7□□□□□ -0.86
VPS13C-206ENST00000558338 SBNO2Q9Y2G9 1366 aa9.7□□□□□ -0.86
VPS13C-206ENST00000558338 KNSTRNQ9Y448 316 aa9.7□□□□□ -0.86
VPS13C-206ENST00000558338 PPLO60437 1756 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms