RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 FGD6Q6ZV73 1430 aa10.37□□□□□ -0.75
HDAC3-216ENST00000523088 SLC4A1APQ9BWU0 796 aaKnown RBP10.37□□□□□ -0.75
HDAC3-216ENST00000523088 TEX2Q8IWB9 1127 aa10.36□□□□□ -0.75
HDAC3-216ENST00000523088 CERKQ8TCT0 537 aa10.36□□□□□ -0.75
HDAC3-216ENST00000523088 YTHDC1Q96MU7 727 aaKnown RBP10.36□□□□□ -0.75
HDAC3-216ENST00000523088 PRDM15P57071 1507 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-216ENST00000523088 TNRQ92752 1358 aa10.36□□□□□ -0.75
HDAC3-216ENST00000523088 ABCC3O15438 1527 aa10.35□□□□□ -0.75
HDAC3-216ENST00000523088 NCLP19338 710 aaKnown RBP10.35□□□□□ -0.75
HDAC3-216ENST00000523088 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.35□□□□□ -0.75
HDAC3-216ENST00000523088 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-216ENST00000523088 DEPDC5O75140 1603 aa10.35□□□□□ -0.75
HDAC3-216ENST00000523088 DAPK1P53355 1430 aa10.34□□□□□ -0.75
HDAC3-216ENST00000523088 IPO4Q8TEX9 1081 aaKnown RBP10.34□□□□□ -0.75
HDAC3-216ENST00000523088 KIF15Q9NS87 1388 aa10.34□□□□□ -0.75
HDAC3-216ENST00000523088 SPATA31D1Q6ZQQ2 1576 aa10.34□□□□□ -0.75
HDAC3-216ENST00000523088 MROH1Q8NDA8 1641 aa10.33□□□□□ -0.76
HDAC3-216ENST00000523088 CEP152O94986 1710 aa10.33□□□□□ -0.76
HDAC3-216ENST00000523088 ANKRD30AQ9BXX3 1397 aa10.33□□□□□ -0.76
HDAC3-216ENST00000523088 ABCC5O15440 1437 aa10.33□□□□□ -0.76
HDAC3-216ENST00000523088 KANK1Q14678 1352 aa10.32□□□□□ -0.76
HDAC3-216ENST00000523088 ARHGAP31Q2M1Z3 1444 aa10.32□□□□□ -0.76
HDAC3-216ENST00000523088 UGGT1Q9NYU2 1555 aa10.31□□□□□ -0.76
HDAC3-216ENST00000523088 ADGRL2O95490 1459 aa10.31□□□□□ -0.76
HDAC3-216ENST00000523088 NAP1L2Q9ULW6 460 aaPredicted RBP10.31□□□□□ -0.76
HDAC3-216ENST00000523088 LTBP4Q8N2S1 1624 aa10.31□□□□□ -0.76
HDAC3-216ENST00000523088 KDM5AP29375 1690 aaKnown RBP10.31□□□□□ -0.76
HDAC3-216ENST00000523088 THEMISQ8N1K5 641 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-216ENST00000523088 ERVK-7P63135 1459 aa10.3□□□□□ -0.76
HDAC3-216ENST00000523088 LMTK2Q8IWU2 1503 aa10.29□□□□□ -0.76
HDAC3-216ENST00000523088 CFAP65Q6ZU64 1925 aaKnown RBP10.29□□□□□ -0.76
HDAC3-216ENST00000523088 CPS1P31327 1500 aa10.28□□□□□ -0.76
HDAC3-216ENST00000523088 MED14O60244 1454 aa10.28□□□□□ -0.76
HDAC3-216ENST00000523088 UBR1Q8IWV7 1749 aa10.27□□□□□ -0.76
HDAC3-216ENST00000523088 NEURL4Q96JN8 1562 aa10.27□□□□□ -0.76
HDAC3-216ENST00000523088 ANKLE2Q86XL3 938 aa10.27□□□□□ -0.77
HDAC3-216ENST00000523088 IQGAP1P46940 1657 aa10.27□□□□□ -0.77
HDAC3-216ENST00000523088 VWDEQ8N2E2 1590 aa10.26□□□□□ -0.77
HDAC3-216ENST00000523088 RPRD2Q5VT52 1461 aaKnown RBP10.26□□□□□ -0.77
HDAC3-216ENST00000523088 SETQ01105 290 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-216ENST00000523088 TSHZ2Q9NRE2 1034 aa10.26□□□□□ -0.77
HDAC3-216ENST00000523088 EFCAB6Q5THR3 1501 aa10.25□□□□□ -0.77
HDAC3-216ENST00000523088 FBXO31Q5XUX0 539 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-216ENST00000523088 PSMD1Q99460 953 aa10.25□□□□□ -0.77
HDAC3-216ENST00000523088 RRP7BPQ9NSQ0 103 aa10.25□□□□□ -0.77
HDAC3-216ENST00000523088 NCKAP5LQ9HCH0 1330 aa10.25□□□□□ -0.77
HDAC3-216ENST00000523088 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.25□□□□□ -0.77
HDAC3-216ENST00000523088 SYNMO15061 1565 aa10.24□□□□□ -0.77
HDAC3-216ENST00000523088 TET3O43151 1660 aa10.24□□□□□ -0.77
HDAC3-216ENST00000523088 GCC2Q8IWJ2 1684 aa10.24□□□□□ -0.77
HDAC3-216ENST00000523088 ROCK1Q13464 1354 aa10.24□□□□□ -0.77
HDAC3-216ENST00000523088 NPHP4O75161 1426 aaPredicted RBP10.24□□□□□ -0.77
HDAC3-216ENST00000523088 ANKRD50Q9ULJ7 1429 aa10.24□□□□□ -0.77
HDAC3-216ENST00000523088 SLIT1O75093 1534 aa10.23□□□□□ -0.77
HDAC3-216ENST00000523088 PTMSP20962 102 aa10.23□□□□□ -0.77
HDAC3-216ENST00000523088 FAM50AQ14320 339 aaKnown RBP10.23□□□□□ -0.77
HDAC3-216ENST00000523088 CC2D2BQ6DHV5 1058 aa10.23□□□□□ -0.77
HDAC3-216ENST00000523088 KDM2AQ9Y2K7 1162 aa10.23□□□□□ -0.77
HDAC3-216ENST00000523088 UNC13BO14795 1591 aa10.22□□□□□ -0.77
HDAC3-216ENST00000523088 NEFMP07197 916 aa10.22□□□□□ -0.77
HDAC3-216ENST00000523088 SCAF11Q99590 1463 aaKnown RBP10.22□□□□□ -0.77
HDAC3-216ENST00000523088 MCCP23508 829 aa10.21□□□□□ -0.77
HDAC3-216ENST00000523088 GRIPAP1Q4V328 841 aa10.21□□□□□ -0.77
HDAC3-216ENST00000523088 FTSJ3Q8IY81 847 aaKnown RBP10.21□□□□□ -0.77
HDAC3-216ENST00000523088 ZNF592Q92610 1267 aa10.21□□□□□ -0.77
HDAC3-216ENST00000523088 ZNF335Q9H4Z2 1342 aaPredicted RBP10.21□□□□□ -0.78
HDAC3-216ENST00000523088 ARHGAP23Q9P227 1491 aa10.21□□□□□ -0.78
HDAC3-216ENST00000523088 PIK3C2BO00750 1634 aa10.21□□□□□ -0.78
HDAC3-216ENST00000523088 ZFP91Q96JP5 570 aaPredicted RBP10.2□□□□□ -0.78
HDAC3-216ENST00000523088 EID1Q9Y6B2 187 aa10.2□□□□□ -0.78
HDAC3-216ENST00000523088 ADGRB3O60242 1522 aa10.19□□□□□ -0.78
HDAC3-216ENST00000523088 ZBTB7CA1YPR0 619 aa10.19□□□□□ -0.78
HDAC3-216ENST00000523088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.19□□□□□ -0.784e-9■■□□□ 11.7
HDAC3-216ENST00000523088 SLC52A1Q9NWF4 448 aa10.19□□□□□ -0.78
HDAC3-216ENST00000523088 CHIC2Q9UKJ5 165 aa10.19□□□□□ -0.78
HDAC3-216ENST00000523088 IQGAP3Q86VI3 1631 aa10.18□□□□□ -0.78
HDAC3-216ENST00000523088 NOS1P29475 1434 aa10.18□□□□□ -0.78
HDAC3-216ENST00000523088 VGFO15240 615 aaPredicted RBP10.18□□□□□ -0.78
HDAC3-216ENST00000523088 PTMAP06454 111 aaKnown RBP10.18□□□□□ -0.78
HDAC3-216ENST00000523088 PLCD4Q9BRC7 762 aa10.18□□□□□ -0.78
HDAC3-216ENST00000523088 STAG3Q9UJ98 1225 aa10.18□□□□□ -0.78
HDAC3-216ENST00000523088 RNF216Q9NWF9 866 aaPredicted RBP10.17□□□□□ -0.78
HDAC3-216ENST00000523088 TMEM2Q9UHN6 1383 aa10.16□□□□□ -0.78
HDAC3-216ENST00000523088 TOM1O60784 492 aa10.16□□□□□ -0.78
HDAC3-216ENST00000523088 UBAP1LF5GYI3 381 aa10.15□□□□□ -0.78
HDAC3-216ENST00000523088 HDGFP51858 240 aaKnown RBP10.15□□□□□ -0.78
HDAC3-216ENST00000523088 TXNDC2Q86VQ3 553 aa10.14□□□□□ -0.79
HDAC3-216ENST00000523088 E9PCH4 1651 aa10.14□□□□□ -0.79
HDAC3-216ENST00000523088 RRBP1Q9P2E9 1410 aaKnown RBP10.14□□□□□ -0.79
HDAC3-216ENST00000523088 IRX6P78412 446 aaPredicted RBP10.13□□□□□ -0.79
HDAC3-216ENST00000523088 STRCP1A6NGW2 1772 aa10.13□□□□□ -0.79
HDAC3-216ENST00000523088 MYO5BQ9ULV0 1848 aa10.12□□□□□ -0.79
HDAC3-216ENST00000523088 SECISBP2LQ93073 1101 aaKnown RBP10.12□□□□□ -0.79
HDAC3-216ENST00000523088 BRPF3Q9ULD4 1205 aa10.12□□□□□ -0.79
HDAC3-216ENST00000523088 SPHKAPQ2M3C7 1700 aa10.12□□□□□ -0.79
HDAC3-216ENST00000523088 LRRC7Q96NW7 1537 aa10.12□□□□□ -0.79
HDAC3-216ENST00000523088 TMEM131LA2VDJ0 1609 aa10.11□□□□□ -0.79
HDAC3-216ENST00000523088 NKTRP30414 1462 aaKnown RBP10.11□□□□□ -0.79
HDAC3-216ENST00000523088 DIP2AQ14689 1571 aa10.11□□□□□ -0.79
HDAC3-216ENST00000523088 NWD1Q149M9 1564 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms