RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	TNA1	P53322	534 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	ASI1	P54074	624 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	PRM15	Q03262	622 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	ACL4	Q03771	387 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	YDR102C	Q03864	110 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	SPC19	Q03954	165 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	BNA7	Q04066	261 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	IPK1	Q06667	281 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	HRT1	Q08273	121 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	ACF2	Q12168	779 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	RTR2	Q12378	196 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	YDL007C-A	Q2V2Q0	85 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	YOL159C-A	Q3E769	90 aa		4.2	□□□□□ -1.74
VPS29	YHR012W	SCEI	P03882	235 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	RPL24A	P04449	155 aa	Known RBP	4.19	□□□□□ -1.74
VPS29	YHR012W	SNF6	P18888	332 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	APA2	P22108	325 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	STE50	P25344	346 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	NTG1	P31378	399 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	YKL077W	P36081	392 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	SIC1	P38634	284 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	CTF8	P38877	133 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	SED1	Q01589	338 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	DIG2	Q03373	323 aa	Known RBP	4.19	□□□□□ -1.74
VPS29	YHR012W	YDR391C	Q04170	232 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	NNT1	Q05874	261 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	MLC2	Q06580	163 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	YPR196W	Q06595	470 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	SIA1	Q12212	622 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	RTN2	Q12443	393 aa		4.19	□□□□□ -1.74
VPS29	YHR012W	TIM9	O74700	87 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	MET3	P08536	511 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	NFT1	P0CE68	1218 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	YML003W	P0CF16	290 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	BUD5	P25300	642 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	APL3	P38065	1025 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	YBR138C	P38277	524 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	SWD1	P39706	426 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	BUR6	P40096	142 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	MAM33	P40513	266 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	DIM1	P41819	318 aa	Known RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	PFS2	P42841	465 aa	Known RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	FAR7	P43592	221 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	RET2	P43621	546 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	SSY5	P47002	699 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	RMD9	P53140	646 aa	Known RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	CIK1	Q01649	594 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	YPL077C	Q02831	240 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	ABZ2	Q03266	374 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	MRPL51	Q06090	140 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	YDL114W	Q07530	308 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	UIP4	Q08926	304 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	SPC3	Q12133	184 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	MCT1	Q12283	360 aa		4.18	□□□□□ -1.74
VPS29	YHR012W	RDL1	Q12305	139 aa	Known RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	TY1A-NL1	Q12391	440 aa	Known RBP	4.18	□□□□□ -1.74
VPS29	YHR012W	MSN1	P22148	382 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	KRR1	P25586	316 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	VPH2	P32341	215 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	RPC82	P32349	654 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	GSH1	P32477	678 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	TCA17	P32613	152 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	YKL102C	P34249	101 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SPT10	P35208	640 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SPC34	P36131	295 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SHM2	P37291	469 aa	Known RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	ARO9	P38840	513 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	PHO90	P39535	881 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
VPS29	YHR012W	MPH1	P40562	993 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	STB1	P42845	420 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	YHC3	P47040	408 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	LOH1	P47055	219 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SMM1	P53720	384 aa	Known RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	RSM23	Q01163	450 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SPR6	Q01684	191 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	GPI17	Q04080	534 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	MCH4	Q08268	501 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	SYC1	Q08553	188 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	RRS1	Q08746	203 aa	Known RBP	4.17	□□□□□ -1.74
VPS29	YHR012W	VIK1	Q12045	647 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	NFI1	Q12216	726 aa		4.17	□□□□□ -1.74
VPS29	YHR012W	PDE2	P06776	526 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	NAM2	P11325	894 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	YAK1	P14680	807 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	PPA2	P28239	310 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	APE2	P32454	952 aa	Known RBP	4.16	□□□□□ -1.74
VPS29	YHR012W	PRP19	P32523	503 aa	Known RBP	4.16	□□□□□ -1.74
VPS29	YHR012W	SUR1	P33300	382 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	SRP102	P36057	244 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS29	YHR012W	FAT1	P38225	669 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	FMP33	P46998	180 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	EXG2	P52911	562 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	YGR016W	P53209	190 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	RRN9	P53437	365 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	DUG3	P53871	357 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	ASA1	Q06822	443 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	CSI2	Q08054	341 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	LSO1	Q3E827	93 aa		4.16	□□□□□ -1.74
VPS29	YHR012W	DSF1	P0CX08	502 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms