RNA–Protein interactions for RNA: YNL021W

HDA1, Transcript of Putative catalytic subunit of a class II histone deacetylase complex, yeast

Gene HDA1, Length 2,121 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HDA1	YNL021W	LOS1	P33418	1100 aa	Predicted RBP	6.29	□□□□□ -1.4
HDA1	YNL021W	TIS11	P47977	285 aa		6.29	□□□□□ -1.4
HDA1	YNL021W	SAM4	Q08985	325 aa	Known RBP	6.29	□□□□□ -1.4
HDA1	YNL021W	SLF1	Q12034	447 aa	Known RBP	6.29	□□□□□ -1.4
HDA1	YNL021W	IZH4	Q99393	312 aa		6.29	□□□□□ -1.4
HDA1	YNL021W	THP2	O13539	261 aa	Known RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	SSC1	P0CS90	654 aa	Known RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	ARF2	P19146	181 aa	Known RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	PUT3	P25502	979 aa	Predicted RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	GPX2	P38143	162 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	AVT2	P39981	480 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	RTT101	P47050	842 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	PEX31	P53203	462 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	6.28	□□□□□ -1.4	not detected
HDA1	YNL021W	YPL062W	Q02781	134 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	SPC2	Q04969	178 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	YOP1	Q12402	180 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	DAL82	P21705	255 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	TKL2	P33315	681 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	PRP18	P33411	251 aa	Predicted RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	GAT1	P43574	510 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	SED5	Q01590	340 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	CDC123	Q05791	360 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	BER1	Q06688	274 aa	Known RBP	6.28	□□□□□ -1.4
HDA1	YNL021W	REX4	Q08237	289 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	GPM2	Q12008	311 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	APC9	Q12107	265 aa		6.28	□□□□□ -1.4
HDA1	YNL021W	PEX2	P32800	271 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	SPC34	P36131	295 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	POP7	P38291	140 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	URA8	P38627	578 aa	Predicted RBP	6.27	□□□□□ -1.41
HDA1	YNL021W	ERG10	P41338	398 aa	Known RBP	6.27	□□□□□ -1.41
HDA1	YNL021W	YNR048W	P53740	393 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	OST6	Q03723	332 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	ADH6	Q04894	360 aa	Known RBP	6.27	□□□□□ -1.41
HDA1	YNL021W	FAR8	Q05040	523 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	YCL012C	Q8J0M4	134 aa		6.27	□□□□□ -1.41
HDA1	YNL021W	TAF14	P35189	244 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	RIM2	P38127	377 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	RFC4	P40339	323 aa	Known RBP	6.26	□□□□□ -1.41
HDA1	YNL021W	HER2	Q03557	464 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	YOR387C	Q08910	206 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	SET6	Q12529	373 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	COX13	P32799	129 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	RAD5	P32849	1169 aa	Predicted RBP	6.26	□□□□□ -1.41
HDA1	YNL021W	CBT1	P36038	271 aa	Predicted RBP	6.26	□□□□□ -1.41
HDA1	YNL021W	PHD1	P36093	366 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	YBR056W	P38081	501 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	AIM18	P38884	321 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	SUR2	P38992	349 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	RRT5	P43607	289 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	VBA1	Q04301	562 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	SRO7	Q12038	1033 aa		6.26	□□□□□ -1.41
HDA1	YNL021W	COQ3	P27680	312 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	CTS1	P29029	562 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	FRE2	P36033	711 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	HMT1	P38074	348 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	MIC12	P38341	106 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	ERG28	P40030	148 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	SEC10	Q06245	871 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	DDC1	Q08949	612 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	YPQ1	Q12010	308 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	BSC1	Q12140	328 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	RRI1	Q12468	440 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	SNF8	Q12483	233 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	YAK1	P14680	807 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	MRPL8	P22353	238 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	MNS1	P32906	549 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	ATG17	Q06410	417 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	BSP1	Q06604	576 aa		6.25	□□□□□ -1.41
HDA1	YNL021W	DCC1	P25559	380 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	VMA6	P32366	345 aa	Known RBP	6.24	□□□□□ -1.41
HDA1	YNL021W	PPZ2	P33329	710 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	ECM15	P35195	104 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	APD1	P38281	316 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	PCL6	P40038	420 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	HOC1	P47124	396 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	CWC23	P52868	283 aa	Predicted RBP	6.24	□□□□□ -1.41
HDA1	YNL021W	SGT1	Q08446	395 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	GRE1	Q08969	168 aa		6.24	□□□□□ -1.41
HDA1	YNL021W	RPL24B	P24000	155 aa	Known RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	MRPL6	P32904	214 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	EGD2	P38879	174 aa	Known RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	FHL1	P39521	936 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	AGE2	P40529	298 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	GUF1	P46943	645 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	DIA1	P54005	336 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	SKI8	Q02793	397 aa	Predicted RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	CTL1	Q03220	320 aa	Known RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	KRE28	Q04431	385 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	GLO2	Q05584	274 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	EFG1	Q3E705	233 aa	Known RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	YKL183C-A	Q3E765	70 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	6.23	□□□□□ -1.41	not detected
HDA1	YNL021W	DPB2	P24482	689 aa	Predicted RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	ACB1	P31787	87 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	ETR1	P38071	380 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	NPT1	P39683	429 aa	Known RBP	6.23	□□□□□ -1.41
HDA1	YNL021W	VPS52	P39904	641 aa		6.23	□□□□□ -1.41
HDA1	YNL021W	YER184C	P39961	794 aa		6.23	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 69.7 ms