Protein–RNA interactions for Protein: P39904

VPS52, Vacuolar protein sorting-associated protein 52, yeastyeast

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS52P39904 YML009W-BYML009W-B 477 nt19.04■□□□□ 0.64
VPS52P39904 NSR1YGR159C 1245 nt18.89■□□□□ 0.61
VPS52P39904 NOP1YDL014W 984 nt18.66■□□□□ 0.58
VPS52P39904 YKL036CYKL036C 393 nt17.28■□□□□ 0.36
VPS52P39904 MDJ1YFL016C 1536 nt16.55■□□□□ 0.24
VPS52P39904 Q0297Q0297 156 nt16.33■□□□□ 0.2
VPS52P39904 SRX1YKL086W 384 nt16.26■□□□□ 0.19
VPS52P39904 YJL027CYJL027C 417 nt16.14■□□□□ 0.17
VPS52P39904 SCS3YGL126W 1143 nt15.73■□□□□ 0.11
VPS52P39904 YCR051WYCR051W 669 nt15.41■□□□□ 0.06
VPS52P39904 YOL085CYOL085C 342 nt14.93□□□□□ -0.02
VPS52P39904 DBP2YNL112W 1641 nt14.68□□□□□ -0.06
VPS52P39904 RPP1BYDL130W 321 nt14.64□□□□□ -0.07
VPS52P39904 PKP1YIL042C 1185 nt14.64□□□□□ -0.07
VPS52P39904 TRN1tP(UGG)A 72 nt14.6□□□□□ -0.07
VPS52P39904 SUF9tP(UGG)F 72 nt14.6□□□□□ -0.07
VPS52P39904 SUF8tP(UGG)H 72 nt14.6□□□□□ -0.07
VPS52P39904 tP(UGG)LtP(UGG)L 72 nt14.6□□□□□ -0.07
VPS52P39904 SUF7tP(UGG)M 72 nt14.6□□□□□ -0.07
VPS52P39904 tP(UGG)N1tP(UGG)N1 72 nt14.6□□□□□ -0.07
VPS52P39904 tP(UGG)N2tP(UGG)N2 72 nt14.6□□□□□ -0.07
VPS52P39904 tP(UGG)O1tP(UGG)O1 72 nt14.6□□□□□ -0.07
VPS52P39904 SUF11tP(UGG)O2 72 nt14.6□□□□□ -0.07
VPS52P39904 CCC1YLR220W 969 nt14.44□□□□□ -0.1
VPS52P39904 SCJ1YMR214W 1134 nt14.18□□□□□ -0.14
VPS52P39904 YBR190WYBR190W 312 nt14.17□□□□□ -0.14
VPS52P39904 ATS1YAL020C 1002 nt14.12□□□□□ -0.15
VPS52P39904 RVS167YDR388W 1449 nt13.96□□□□□ -0.18
VPS52P39904 PET122YER153C 765 nt13.93□□□□□ -0.18
VPS52P39904 SCR1SCR1 522 nt13.9□□□□□ -0.18
VPS52P39904 tP(UGG)O3tP(UGG)O3 72 nt13.86□□□□□ -0.19
VPS52P39904 RTC3YHR087W 336 nt13.85□□□□□ -0.19
VPS52P39904 RRN5YLR141W 1092 nt13.57□□□□□ -0.24
VPS52P39904 SHR5YOL110W 714 nt13.46□□□□□ -0.25
VPS52P39904 YDJ1YNL064C 1230 nt13.45□□□□□ -0.26
VPS52P39904 RSB1YOR049C 1065 nt13.33□□□□□ -0.28
VPS52P39904 YER088W-BYER088W-B 147 nt13.29□□□□□ -0.28
VPS52P39904 GAR1YHR089C 618 nt13.08□□□□□ -0.32
VPS52P39904 PST2YDR032C 597 nt13.06□□□□□ -0.32
VPS52P39904 SSA3YBL075C 1950 nt13.03□□□□□ -0.32
VPS52P39904 URN1YPR152C 1398 nt12.98□□□□□ -0.33
VPS52P39904 DEP1YAL013W 1218 nt12.97□□□□□ -0.33
VPS52P39904 RPN10YHR200W 807 nt12.91□□□□□ -0.34
VPS52P39904 PUT4YOR348C 1884 nt12.89□□□□□ -0.35
VPS52P39904 YNL208WYNL208W 600 nt12.86□□□□□ -0.35
VPS52P39904 OPI9YLR338W 858 nt12.79□□□□□ -0.36
VPS52P39904 TIR1YER011W 765 nt12.64□□□□□ -0.39
VPS52P39904 YKL097CYKL097C 411 nt12.63□□□□□ -0.39
VPS52P39904 SAH1YER043C 1350 nt12.63□□□□□ -0.39
VPS52P39904 ARE1YCR048W 1833 nt12.62□□□□□ -0.39
VPS52P39904 SHU1YHL006C 453 nt12.47□□□□□ -0.41
VPS52P39904 PUN1YLR414C 792 nt12.46□□□□□ -0.41
VPS52P39904 POA1YBR022W 534 nt12.45□□□□□ -0.42
VPS52P39904 YHR049C-AYHR049C-A 297 nt12.44□□□□□ -0.42
VPS52P39904 YJR018WYJR018W 363 nt12.42□□□□□ -0.42
VPS52P39904 SSA1YAL005C 1929 nt12.42□□□□□ -0.42
VPS52P39904 RPP2BYDR382W 333 nt12.25□□□□□ -0.45
VPS52P39904 PTC2YER089C 1395 nt12.23□□□□□ -0.45
VPS52P39904 BSC6YOL137W 1494 nt12.22□□□□□ -0.45
VPS52P39904 YAL037C-BYAL037C-B 975 nt12.21□□□□□ -0.45
VPS52P39904 SRB2YHR041C 633 nt12.16□□□□□ -0.46
VPS52P39904 YJR120WYJR120W 351 nt12.16□□□□□ -0.46
VPS52P39904 YGR021WYGR021W 873 nt12.13□□□□□ -0.47
VPS52P39904 BUD23YCR047C 828 nt12.11□□□□□ -0.47
VPS52P39904 NAB2YGL122C 1578 nt12.08□□□□□ -0.48
VPS52P39904 WWM1YFL010C 636 nt12.07□□□□□ -0.48
VPS52P39904 HOM6YJR139C 1080 nt12.03□□□□□ -0.48
VPS52P39904 YOR139CYOR139C 393 nt12.03□□□□□ -0.48
VPS52P39904 INM2YDR287W 879 nt12.01□□□□□ -0.49
VPS52P39904 BDH2YAL061W 1254 nt11.99□□□□□ -0.49
VPS52P39904 NPL3YDR432W 1245 nt11.98□□□□□ -0.49
VPS52P39904 YFL021C-AYFL021C-A 855 nt11.94□□□□□ -0.5
VPS52P39904 DAL1YIR027C 1383 nt11.93□□□□□ -0.5
VPS52P39904 MNP1YGL068W 585 nt11.93□□□□□ -0.5
VPS52P39904 FPR4YLR449W 1179 nt11.9□□□□□ -0.5
VPS52P39904 LSM3YLR438C-A 270 nt11.89□□□□□ -0.51
VPS52P39904 YOL037CYOL037C 354 nt11.88□□□□□ -0.51
VPS52P39904 FIS1YIL065C 468 nt11.86□□□□□ -0.51
VPS52P39904 RKM5YLR137W 1104 nt11.86□□□□□ -0.51
VPS52P39904 YBL100CYBL100C 315 nt11.86□□□□□ -0.51
VPS52P39904 SPT5YML010W 3192 nt11.83□□□□□ -0.52
VPS52P39904 PHO4YFR034C 939 nt11.8□□□□□ -0.52
VPS52P39904 TRM9YML014W 840 nt11.76□□□□□ -0.53
VPS52P39904 FUN26YAL022C 1554 nt11.72□□□□□ -0.53
VPS52P39904 SSA4YER103W 1929 nt11.65□□□□□ -0.54
VPS52P39904 CCT6YDR188W 1641 nt11.6□□□□□ -0.55
VPS52P39904 tM(CAU)CtM(CAU)C 72 nt11.59□□□□□ -0.55
VPS52P39904 IMT4tM(CAU)E 72 nt11.59□□□□□ -0.55
VPS52P39904 IMT3tM(CAU)J3 72 nt11.59□□□□□ -0.55
VPS52P39904 IMT1tM(CAU)O1 72 nt11.59□□□□□ -0.55
VPS52P39904 IMT2tM(CAU)P 72 nt11.59□□□□□ -0.55
VPS52P39904 ALF1YNL148C 765 nt11.57□□□□□ -0.56
VPS52P39904 YLR281CYLR281C 468 nt11.56□□□□□ -0.56
VPS52P39904 SUF2tP(AGG)C 72 nt11.55□□□□□ -0.56
VPS52P39904 SUF10tP(AGG)N 72 nt11.55□□□□□ -0.56
VPS52P39904 YPS1YLR120C 1710 nt11.54□□□□□ -0.56
VPS52P39904 WHI5YOR083W 888 nt11.51□□□□□ -0.57
VPS52P39904 YDR095CYDR095C 411 nt11.49□□□□□ -0.57
VPS52P39904 PUS2YGL063W 1113 nt11.48□□□□□ -0.57
VPS52P39904 MEP2YNL142W 1500 nt11.48□□□□□ -0.57
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms