RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W KIC1P38692 1080 aa9.56□□□□□ -0.88
UFD1YGR048W TCD1P38756 429 aa9.56□□□□□ -0.88
UFD1YGR048W PRP3Q03338 469 aaPredicted RBP9.56□□□□□ -0.88
UFD1YGR048W SWE1P32944 819 aa9.55□□□□□ -0.88
UFD1YGR048W BCK2P33306 851 aa9.55□□□□□ -0.88
UFD1YGR048W CIN4P39110 191 aa9.55□□□□□ -0.88
UFD1YGR048W ORC1P54784 914 aaPredicted RBP9.55□□□□□ -0.88
UFD1YGR048W GDB1Q06625 1536 aa9.55□□□□□ -0.88
UFD1YGR048W MSH3P25336 1018 aa9.53□□□□□ -0.88
UFD1YGR048W MED8P38304 223 aa9.53□□□□□ -0.88
UFD1YGR048W VPS60Q03390 229 aa9.53□□□□□ -0.88
UFD1YGR048W LCD1Q04377 747 aa9.53□□□□□ -0.88
UFD1YGR048W ESC2Q06340 456 aa9.53□□□□□ -0.88
UFD1YGR048W RAD2P07276 1031 aa9.52□□□□□ -0.89
UFD1YGR048W TY3B-IQ7LHG5 1498 aaKnown RBP9.52□□□□□ -0.89
UFD1YGR048W SPT23P35210 1082 aa9.51□□□□□ -0.89
UFD1YGR048W VRP1P37370 817 aa9.51□□□□□ -0.89
UFD1YGR048W ECM1P39715 212 aa9.51□□□□□ -0.89
UFD1YGR048W BMS1Q08965 1183 aaKnown RBP9.51□□□□□ -0.89
UFD1YGR048W SRP54P20424 541 aaKnown RBP9.5□□□□□ -0.89
UFD1YGR048W LTV1P34078 463 aa9.5□□□□□ -0.89
UFD1YGR048W HOS3Q02959 697 aaKnown RBP9.5□□□□□ -0.89
UFD1YGR048W NOP14Q99207 810 aaKnown RBP9.5□□□□□ -0.89
UFD1YGR048W DEP1P31385 405 aa9.49□□□□□ -0.89
UFD1YGR048W IOC4Q04213 475 aa9.49□□□□□ -0.89
UFD1YGR048W CLB1P24868 471 aa9.48□□□□□ -0.89
UFD1YGR048W TAN1P53072 289 aaPredicted RBP9.48□□□□□ -0.89
UFD1YGR048W RAD9P14737 1309 aa9.48□□□□□ -0.89
UFD1YGR048W RPO31P04051 1460 aa9.47□□□□□ -0.89
UFD1YGR048W RSC1P53236 928 aa9.47□□□□□ -0.89
UFD1YGR048W NNF2P53253 936 aa9.47□□□□□ -0.89
UFD1YGR048W BNI4P53858 892 aa9.47□□□□□ -0.89
UFD1YGR048W RNT1Q02555 471 aa9.47□□□□□ -0.89
UFD1YGR048W COG8Q04632 607 aa9.47□□□□□ -0.89
UFD1YGR048W PTC2P39966 464 aaKnown RBP9.46□□□□□ -0.9
UFD1YGR048W NAB6Q03735 1134 aaKnown RBP RIP-Chip data9.46□□□□□ -0.9not detected
UFD1YGR048W ETT1Q08421 412 aaKnown RBP9.46□□□□□ -0.9
UFD1YGR048W ISU2Q12056 156 aa9.46□□□□□ -0.9
UFD1YGR048W YBT1P32386 1661 aa9.45□□□□□ -0.9
UFD1YGR048W CKB1P43639 278 aa9.45□□□□□ -0.9
UFD1YGR048W DOS2P54858 310 aa9.45□□□□□ -0.9
UFD1YGR048W ARO1P08566 1588 aaKnown RBP9.45□□□□□ -0.9
UFD1YGR048W COX6P00427 148 aa9.44□□□□□ -0.9
UFD1YGR048W PBS2P08018 668 aa9.44□□□□□ -0.9
UFD1YGR048W SUI2P20459 304 aaKnown RBP9.44□□□□□ -0.9
UFD1YGR048W ITC1P53125 1264 aa9.44□□□□□ -0.9
UFD1YGR048W YDL144CQ07589 356 aa9.44□□□□□ -0.9
UFD1YGR048W SWI3P32591 825 aa9.43□□□□□ -0.9
UFD1YGR048W ATG2P53855 1592 aa9.42□□□□□ -0.9
UFD1YGR048W RPP1BP10622 106 aaKnown RBP9.42□□□□□ -0.9
UFD1YGR048W MCM2P29469 868 aa9.42□□□□□ -0.9
UFD1YGR048W NOP8Q08287 484 aaPredicted RBP9.42□□□□□ -0.9
UFD1YGR048W TY1B-DR3Q99231 1755 aa9.42□□□□□ -0.9
UFD1YGR048W DNF2Q12675 1612 aa9.42□□□□□ -0.9
UFD1YGR048W CBF5P33322 483 aaKnown RBP RIP-Chip data9.41□□□□□ -0.9not detected
UFD1YGR048W STU2P46675 888 aa9.41□□□□□ -0.9
UFD1YGR048W VPS72Q03388 795 aa9.41□□□□□ -0.9
UFD1YGR048W YOL087CQ99247 1116 aa9.41□□□□□ -0.9
UFD1YGR048W PDR1P12383 1068 aa9.4□□□□□ -0.9
UFD1YGR048W RKM3P38222 552 aa9.4□□□□□ -0.9
UFD1YGR048W MAK21Q12176 1025 aaKnown RBP9.4□□□□□ -0.9
UFD1YGR048W MET5P47169 1442 aa9.39□□□□□ -0.91
UFD1YGR048W SAP190P36123 1033 aa9.39□□□□□ -0.91
UFD1YGR048W MDG1P53885 366 aa9.39□□□□□ -0.91
UFD1YGR048W UTP13Q05946 817 aaKnown RBP9.39□□□□□ -0.91
UFD1YGR048W CEP3P40969 608 aa9.38□□□□□ -0.91
UFD1YGR048W PEX21P50091 288 aa9.38□□□□□ -0.91
UFD1YGR048W RPN7Q06103 429 aaKnown RBP9.38□□□□□ -0.91
UFD1YGR048W SFI1Q12369 946 aa9.38□□□□□ -0.91
UFD1YGR048W ORC6P38826 435 aa9.37□□□□□ -0.91
UFD1YGR048W MRS2Q01926 470 aa9.37□□□□□ -0.91
UFD1YGR048W YPR015CQ12531 247 aa9.37□□□□□ -0.91
UFD1YGR048W MIC60P36112 540 aa9.36□□□□□ -0.91
UFD1YGR048W ECM16Q04217 1267 aaKnown RBP9.36□□□□□ -0.91
UFD1YGR048W YML082WQ04533 649 aaKnown RBP9.36□□□□□ -0.91
UFD1YGR048W SRS2P12954 1174 aa9.35□□□□□ -0.91
UFD1YGR048W CAT8P39113 1433 aa9.35□□□□□ -0.91
UFD1YGR048W ROM2P51862 1356 aaKnown RBP9.35□□□□□ -0.91
UFD1YGR048W SPB4P25808 606 aaPredicted RBP9.34□□□□□ -0.91
UFD1YGR048W GRX3Q03835 250 aa9.34□□□□□ -0.91
UFD1YGR048W YRR1Q12172 810 aa9.34□□□□□ -0.91
UFD1YGR048W RAM1P22007 431 aa9.33□□□□□ -0.92
UFD1YGR048W RAD51P25454 400 aa9.33□□□□□ -0.92
UFD1YGR048W PBY1P38254 753 aa9.33□□□□□ -0.92
UFD1YGR048W XDJ1P39102 459 aa9.33□□□□□ -0.92
UFD1YGR048W BUD27P43573 796 aaKnown RBP RIP-Chip data9.33□□□□□ -0.92not detected
UFD1YGR048W YGL140CP53120 1219 aa9.33□□□□□ -0.92
UFD1YGR048W SML1Q04964 104 aa9.33□□□□□ -0.92
UFD1YGR048W GAP1P19145 602 aaPredicted RBP9.32□□□□□ -0.92
UFD1YGR048W RPN12P32496 274 aa9.32□□□□□ -0.92
UFD1YGR048W SWH1P35845 1188 aa9.32□□□□□ -0.92
UFD1YGR048W RRT14P40470 206 aa9.32□□□□□ -0.92
UFD1YGR048W TUM1Q08686 304 aaKnown RBP9.32□□□□□ -0.92
UFD1YGR048W MAM3Q12296 706 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-LR1P0C2J3 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-FP0CX63 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-GR2P0CX64 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-CP25384 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-DR2Q03494 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY1B-DR1Q03855 1755 aa9.32□□□□□ -0.92
Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms