RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W MTC1P47018 478 aaKnown RBP17.12■□□□□ 0.33
UFD1YGR048W DRS1P32892 752 aaKnown RBP16.39■□□□□ 0.21
UFD1YGR048W FAP1P53971 965 aa15.15■□□□□ 0.02
UFD1YGR048W PRI1P10363 409 aa14.24□□□□□ -0.13
UFD1YGR048W DIP2Q12220 943 aaPredicted RBP14.23□□□□□ -0.13
UFD1YGR048W PRY3P47033 881 aa14.22□□□□□ -0.13
UFD1YGR048W ISW2Q08773 1120 aa14.12□□□□□ -0.15
UFD1YGR048W AAD16Q02895 342 aa14.11□□□□□ -0.15
UFD1YGR048W RPG1P38249 964 aaKnown RBP14.01□□□□□ -0.17
UFD1YGR048W BFR2Q06631 534 aaKnown RBP13.78□□□□□ -0.2
UFD1YGR048W AVT3P36062 692 aa13.75□□□□□ -0.21
UFD1YGR048W RSE1Q04693 1361 aaKnown RBP13.63□□□□□ -0.23
UFD1YGR048W TSR3Q12094 313 aaKnown RBP13.57□□□□□ -0.24
UFD1YGR048W YCK3P39962 524 aa13.36□□□□□ -0.27
UFD1YGR048W HAA1Q12753 694 aaKnown RBP13.23□□□□□ -0.29
UFD1YGR048W RPL17AP05740 184 aaKnown RBP13.22□□□□□ -0.29
UFD1YGR048W RPL17BP46990 184 aaKnown RBP13.22□□□□□ -0.29
UFD1YGR048W REB1P21538 810 aa13.14□□□□□ -0.31
UFD1YGR048W MRPL32P25348 183 aa12.96□□□□□ -0.33
UFD1YGR048W SPT21P35209 758 aa12.61□□□□□ -0.39
UFD1YGR048W YKR023WP36119 530 aaKnown RBP12.43□□□□□ -0.42
UFD1YGR048W CDC27P38042 758 aa12.41□□□□□ -0.42
UFD1YGR048W YGL015CP33199 130 aa12.29□□□□□ -0.44
UFD1YGR048W TFA1P36100 482 aa12.27□□□□□ -0.45
UFD1YGR048W HOP09932 586 aa12.25□□□□□ -0.45
UFD1YGR048W DCD1P06773 312 aa12.23□□□□□ -0.45
UFD1YGR048W RIM101P33400 625 aa12.22□□□□□ -0.45
UFD1YGR048W TFC8Q12308 588 aa12.16□□□□□ -0.46
UFD1YGR048W MAP2P38174 421 aaKnown RBP11.99□□□□□ -0.49
UFD1YGR048W UBP10P53874 792 aaPredicted RBP11.91□□□□□ -0.5
UFD1YGR048W OXP1P28273 1286 aa11.87□□□□□ -0.51
UFD1YGR048W SCY1P53009 804 aa11.82□□□□□ -0.52
UFD1YGR048W NOP2P40991 618 aaKnown RBP11.81□□□□□ -0.52
UFD1YGR048W BCH2P36122 765 aa11.8□□□□□ -0.52
UFD1YGR048W SPA2P23201 1466 aaKnown RBP11.76□□□□□ -0.53
UFD1YGR048W PTP3P40048 928 aa11.74□□□□□ -0.53
UFD1YGR048W YIL055CP40523 627 aaKnown RBP11.72□□□□□ -0.53
UFD1YGR048W RQC2Q12532 1038 aaKnown RBP11.72□□□□□ -0.53
UFD1YGR048W YAH1Q12184 172 aaKnown RBP11.68□□□□□ -0.54
UFD1YGR048W SLX5P32828 619 aaKnown RBP11.6□□□□□ -0.55
UFD1YGR048W SKI3P17883 1432 aaKnown RBP11.57□□□□□ -0.56
UFD1YGR048W EPS1P40557 701 aa11.53□□□□□ -0.56
UFD1YGR048W RSM7P47150 247 aa11.5□□□□□ -0.57
UFD1YGR048W BDF1P35817 686 aa11.46□□□□□ -0.57
UFD1YGR048W TIF4632P39936 914 aaKnown RBP11.46□□□□□ -0.57
UFD1YGR048W SSN2P38931 1420 aa11.45□□□□□ -0.58
UFD1YGR048W NSR1P27476 414 aaKnown RBP RIP-Chip data11.43□□□□□ -0.58not detected
UFD1YGR048W SGS1P35187 1447 aa11.43□□□□□ -0.58
UFD1YGR048W AI2P03876 854 aa11.41□□□□□ -0.58
UFD1YGR048W YLR271WQ06152 274 aa11.4□□□□□ -0.58
UFD1YGR048W BBC1P47068 1157 aa11.37□□□□□ -0.59
UFD1YGR048W TGL3P40308 642 aa11.35□□□□□ -0.59
UFD1YGR048W SSP1P38871 571 aa11.32□□□□□ -0.6
UFD1YGR048W CAB3P36076 571 aa11.26□□□□□ -0.61
UFD1YGR048W EBP2P36049 427 aaKnown RBP11.25□□□□□ -0.61
UFD1YGR048W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.21□□□□□ -0.61not detected
UFD1YGR048W PSD2P53037 1138 aaKnown RBP11.16□□□□□ -0.62
UFD1YGR048W BUD31P25337 157 aaPredicted RBP11.1□□□□□ -0.63
UFD1YGR048W CST9Q06032 482 aa11.05□□□□□ -0.64
UFD1YGR048W MRM1P25270 412 aa11.04□□□□□ -0.64
UFD1YGR048W MGA2P40578 1113 aa10.99□□□□□ -0.65
UFD1YGR048W YOR238WQ08634 303 aa10.95□□□□□ -0.66
UFD1YGR048W UBP9P39967 754 aa10.92□□□□□ -0.66
UFD1YGR048W YAP5P40574 245 aa10.92□□□□□ -0.66
UFD1YGR048W INO80P53115 1489 aa10.92□□□□□ -0.66
UFD1YGR048W TCB3Q03640 1545 aaKnown RBP10.89□□□□□ -0.67
UFD1YGR048W CHD1P32657 1468 aa10.87□□□□□ -0.67
UFD1YGR048W MST1P07236 462 aa10.87□□□□□ -0.67
UFD1YGR048W ENP1P38333 483 aaKnown RBP10.86□□□□□ -0.67
UFD1YGR048W YPR148CQ06523 435 aa10.85□□□□□ -0.67
UFD1YGR048W PIB1Q06651 286 aa10.85□□□□□ -0.67
UFD1YGR048W SIS2P36024 562 aa10.84□□□□□ -0.67
UFD1YGR048W URN1Q06525 465 aaKnown RBP10.82□□□□□ -0.68
UFD1YGR048W YBL029C-AQ3E756 94 aa10.8□□□□□ -0.68
UFD1YGR048W MMS22Q06164 1454 aa10.8□□□□□ -0.68
UFD1YGR048W RTG3P38165 486 aa10.77□□□□□ -0.69
UFD1YGR048W RCR1P38212 213 aa10.77□□□□□ -0.69
UFD1YGR048W WSC3Q12215 556 aa10.73□□□□□ -0.69
UFD1YGR048W VPS29P38759 282 aa10.72□□□□□ -0.69
UFD1YGR048W UFD4P33202 1483 aa10.71□□□□□ -0.69
UFD1YGR048W GTT3P39996 337 aa10.71□□□□□ -0.69
UFD1YGR048W YFR006WP43590 535 aa10.7□□□□□ -0.7
UFD1YGR048W YMR1P47147 688 aaKnown RBP RIP-Chip data10.68□□□□□ -0.7not detected
UFD1YGR048W SIS1P25294 352 aaKnown RBP10.67□□□□□ -0.7
UFD1YGR048W DBP1P24784 617 aaKnown RBP10.66□□□□□ -0.7
UFD1YGR048W STS1P38637 319 aa10.64□□□□□ -0.71
UFD1YGR048W VNX1P42839 908 aa10.64□□□□□ -0.71
UFD1YGR048W STH1P32597 1359 aa10.64□□□□□ -0.71
UFD1YGR048W XRN1P22147 1528 aaKnown RBP10.6□□□□□ -0.71
UFD1YGR048W SPP41P38904 1435 aa10.59□□□□□ -0.71
UFD1YGR048W SPP1Q03012 353 aa10.57□□□□□ -0.72
UFD1YGR048W TCB2P48231 1178 aa10.56□□□□□ -0.72
UFD1YGR048W TAF7Q05021 590 aa10.55□□□□□ -0.72
UFD1YGR048W POL5P39985 1022 aaKnown RBP10.51□□□□□ -0.73
UFD1YGR048W SEC3P33332 1336 aaKnown RBP10.5□□□□□ -0.73
UFD1YGR048W VMA1P17255 1071 aaKnown RBP10.49□□□□□ -0.73
UFD1YGR048W RAM2P29703 316 aa10.48□□□□□ -0.73
UFD1YGR048W MON2P48563 1636 aaPredicted RBP10.47□□□□□ -0.73
UFD1YGR048W SET4P42948 560 aa10.47□□□□□ -0.73
UFD1YGR048W TIF11P38912 153 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 5,963 RNA–protein pairs in 17.9 ms