RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 CAMSAP1Q5T5Y3 1602 aa12.39□□□□□ -0.43
PNKP-229ENST00000637897 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
PNKP-229ENST00000637897 LTBP4Q8N2S1 1624 aa12.38□□□□□ -0.43
PNKP-229ENST00000637897 RNF17Q9BXT8 1623 aaKnown RBP12.38□□□□□ -0.43
PNKP-229ENST00000637897 PTPN23Q9H3S7 1636 aa12.38□□□□□ -0.43
PNKP-229ENST00000637897 CERKQ8TCT0 537 aa12.38□□□□□ -0.43
PNKP-229ENST00000637897 CEP170BQ9Y4F5 1589 aaPredicted RBP12.38□□□□□ -0.43
PNKP-229ENST00000637897 NCKAP5LQ9HCH0 1330 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 FGD6Q6ZV73 1430 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 KDM5DQ9BY66 1539 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 TSPY4P0CV99 314 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 TSPY10P0CW01 314 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 PZPP20742 1482 aa12.37□□□□□ -0.43
PNKP-229ENST00000637897 DNMT1P26358 1616 aaKnown RBP12.36□□□□□ -0.43
PNKP-229ENST00000637897 ABCC3O15438 1527 aa12.36□□□□□ -0.43
PNKP-229ENST00000637897 CROCC2H7BZ55 1655 aa12.35□□□□□ -0.43
PNKP-229ENST00000637897 DISP3Q9P2K9 1392 aa12.35□□□□□ -0.43
PNKP-229ENST00000637897 DAPK1P53355 1430 aa12.35□□□□□ -0.43
PNKP-229ENST00000637897 A2ML1A8K2U0 1454 aa12.34□□□□□ -0.43
PNKP-229ENST00000637897 SHANK2Q9UPX8 1470 aa12.34□□□□□ -0.43
PNKP-229ENST00000637897 FAM135AQ9P2D6 1515 aa12.34□□□□□ -0.43
PNKP-229ENST00000637897 PLA2R1Q13018 1463 aa12.34□□□□□ -0.43
PNKP-229ENST00000637897 EIF2AK4Q9P2K8 1649 aaKnown RBP12.33□□□□□ -0.43
PNKP-229ENST00000637897 TNRQ92752 1358 aa12.33□□□□□ -0.44
PNKP-229ENST00000637897 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
PNKP-229ENST00000637897 DUOX2Q9NRD8 1548 aa12.32□□□□□ -0.44
PNKP-229ENST00000637897 KIF15Q9NS87 1388 aa12.32□□□□□ -0.44
PNKP-229ENST00000637897 NEURL4Q96JN8 1562 aa12.32□□□□□ -0.44
PNKP-229ENST00000637897 RRP7BPQ9NSQ0 103 aa12.31□□□□□ -0.44
PNKP-229ENST00000637897 DMRT2Q9Y5R5 561 aa12.31□□□□□ -0.44
PNKP-229ENST00000637897 CEP152O94986 1710 aa12.31□□□□□ -0.44
PNKP-229ENST00000637897 SPATA31D1Q6ZQQ2 1576 aa12.3□□□□□ -0.44
PNKP-229ENST00000637897 ZNF335Q9H4Z2 1342 aaPredicted RBP12.3□□□□□ -0.44
PNKP-229ENST00000637897 ERVK-7P63135 1459 aa12.29□□□□□ -0.44
PNKP-229ENST00000637897 PRDM15P57071 1507 aaPredicted RBP12.29□□□□□ -0.44
PNKP-229ENST00000637897 CHIC2Q9UKJ5 165 aa12.29□□□□□ -0.44
PNKP-229ENST00000637897 DEPDC5O75140 1603 aa12.29□□□□□ -0.44
PNKP-229ENST00000637897 VWDEQ8N2E2 1590 aa12.28□□□□□ -0.44
PNKP-229ENST00000637897 PKD2Q13563 968 aa12.28□□□□□ -0.44
PNKP-229ENST00000637897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.28□□□□□ -0.44
PNKP-229ENST00000637897 ERBINQ96RT1 1412 aa12.28□□□□□ -0.44
PNKP-229ENST00000637897 ADGRL2O95490 1459 aa12.27□□□□□ -0.44
PNKP-229ENST00000637897 CFAP65Q6ZU64 1925 aaKnown RBP12.27□□□□□ -0.44
PNKP-229ENST00000637897 ZC3H13Q5T200 1668 aaKnown RBP12.27□□□□□ -0.45
PNKP-229ENST00000637897 APLP2Q06481 763 aa12.27□□□□□ -0.45
PNKP-229ENST00000637897 ARHGAP31Q2M1Z3 1444 aa12.26□□□□□ -0.45
PNKP-229ENST00000637897 NLRP1Q9C000 1473 aa12.26□□□□□ -0.45
PNKP-229ENST00000637897 UGGT1Q9NYU2 1555 aa12.24□□□□□ -0.45
PNKP-229ENST00000637897 POLR1AO95602 1720 aaPredicted RBP12.23□□□□□ -0.45
PNKP-229ENST00000637897 LMTK2Q8IWU2 1503 aa12.23□□□□□ -0.45
PNKP-229ENST00000637897 MED14O60244 1454 aa12.23□□□□□ -0.45
PNKP-229ENST00000637897 PPARGC1BQ86YN6 1023 aaKnown RBP12.23□□□□□ -0.45
PNKP-229ENST00000637897 ANKRD30AQ9BXX3 1397 aa12.22□□□□□ -0.45
PNKP-229ENST00000637897 UBR1Q8IWV7 1749 aa12.22□□□□□ -0.45
PNKP-229ENST00000637897 LTKP29376 864 aa12.21□□□□□ -0.45
PNKP-229ENST00000637897 FAM50AQ14320 339 aaKnown RBP12.21□□□□□ -0.45
PNKP-229ENST00000637897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.21□□□□□ -0.45
PNKP-229ENST00000637897 SYNMO15061 1565 aa12.21□□□□□ -0.46
PNKP-229ENST00000637897 IQSEC2Q5JU85 1478 aa12.21□□□□□ -0.46
PNKP-229ENST00000637897 ARHGAP23Q9P227 1491 aa12.21□□□□□ -0.46
PNKP-229ENST00000637897 STRCP1A6NGW2 1772 aa12.2□□□□□ -0.46
PNKP-229ENST00000637897 THEMISQ8N1K5 641 aaPredicted RBP12.2□□□□□ -0.46
PNKP-229ENST00000637897 NOS1P29475 1434 aa12.2□□□□□ -0.46
PNKP-229ENST00000637897 ALKQ9UM73 1620 aa12.19□□□□□ -0.46
PNKP-229ENST00000637897 NPHP4O75161 1426 aaPredicted RBP12.19□□□□□ -0.46
PNKP-229ENST00000637897 ANKRD50Q9ULJ7 1429 aa12.19□□□□□ -0.46
PNKP-229ENST00000637897 ANKLE2Q86XL3 938 aa12.18□□□□□ -0.46
PNKP-229ENST00000637897 PIK3C2BO00750 1634 aa12.18□□□□□ -0.46
PNKP-229ENST00000637897 SLIT1O75093 1534 aa12.17□□□□□ -0.46
PNKP-229ENST00000637897 EFCAB6Q5THR3 1501 aa12.17□□□□□ -0.46
PNKP-229ENST00000637897 IDI1Q13907 227 aa12.17□□□□□ -0.46
PNKP-229ENST00000637897 IQGAP1P46940 1657 aa12.16□□□□□ -0.46
PNKP-229ENST00000637897 UNC13BO14795 1591 aa12.14□□□□□ -0.47
PNKP-229ENST00000637897 ROCK1Q13464 1354 aa12.14□□□□□ -0.47
PNKP-229ENST00000637897 SCAF11Q99590 1463 aaKnown RBP12.14□□□□□ -0.47
PNKP-229ENST00000637897 TMEM2Q9UHN6 1383 aa12.13□□□□□ -0.47
PNKP-229ENST00000637897 KANK1Q14678 1352 aa12.12□□□□□ -0.47
PNKP-229ENST00000637897 RRBP1Q9P2E9 1410 aaKnown RBP12.11□□□□□ -0.47
PNKP-229ENST00000637897 CPS1P31327 1500 aa12.11□□□□□ -0.47
PNKP-229ENST00000637897 LRRC7Q96NW7 1537 aa12.11□□□□□ -0.47
PNKP-229ENST00000637897 TET3O43151 1660 aa12.11□□□□□ -0.47
PNKP-229ENST00000637897 TXNDC2Q86VQ3 553 aa12.11□□□□□ -0.47
PNKP-229ENST00000637897 E9PCH4 1651 aa12.1□□□□□ -0.47
PNKP-229ENST00000637897 KDM5AP29375 1690 aaKnown RBP12.1□□□□□ -0.47
PNKP-229ENST00000637897 UBAP1LF5GYI3 381 aa12.1□□□□□ -0.47
PNKP-229ENST00000637897 XIRP1Q702N8 1843 aaKnown RBP12.09□□□□□ -0.47
PNKP-229ENST00000637897 MYO5BQ9ULV0 1848 aa12.09□□□□□ -0.47
PNKP-229ENST00000637897 RPRD2Q5VT52 1461 aaKnown RBP12.09□□□□□ -0.47
PNKP-229ENST00000637897 ITGAEP38570 1179 aa12.09□□□□□ -0.47
PNKP-229ENST00000637897 ADGRB3O60242 1522 aa12.09□□□□□ -0.47
PNKP-229ENST00000637897 ZFYVE9O95405 1425 aa12.09□□□□□ -0.47
PNKP-229ENST00000637897 IQGAP3Q86VI3 1631 aa12.08□□□□□ -0.48
PNKP-229ENST00000637897 TMEM131LA2VDJ0 1609 aa12.08□□□□□ -0.48
PNKP-229ENST00000637897 GCC2Q8IWJ2 1684 aa12.07□□□□□ -0.48
PNKP-229ENST00000637897 SLC52A1Q9NWF4 448 aa12.06□□□□□ -0.48
PNKP-229ENST00000637897 NUP155O75694 1391 aa12.05□□□□□ -0.48
PNKP-229ENST00000637897 NAIPQ13075 1403 aa12.04□□□□□ -0.48
PNKP-229ENST00000637897 HSPA1LP34931 641 aa12.04□□□□□ -0.48
PNKP-229ENST00000637897 SLC26A8Q96RN1 970 aa12.04□□□□□ -0.48
PNKP-229ENST00000637897 PIP4K2BP78356 416 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms