RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 NISCHQ9Y2I1 1504 aa19.74■□□□□ 0.75
PNKP-229ENST00000637897 CCDC180Q9P1Z9 1646 aa17.57■□□□□ 0.4
PNKP-229ENST00000637897 ABCC9O60706 1549 aa17.51■□□□□ 0.39
PNKP-229ENST00000637897 RB1CC1Q8TDY2 1594 aa16.64■□□□□ 0.25
PNKP-229ENST00000637897 NACADO15069 1562 aa16.6■□□□□ 0.25
PNKP-229ENST00000637897 DCAF8L2P0C7V8 631 aa16.5■□□□□ 0.23
PNKP-229ENST00000637897 DNAJC5BQ9UF47 199 aa16.46■□□□□ 0.23
PNKP-229ENST00000637897 MYO15BQ96JP2 1530 aa16.44■□□□□ 0.22
PNKP-229ENST00000637897 ZCCHC6Q5VYS8 1495 aaKnown RBP16.4■□□□□ 0.22
PNKP-229ENST00000637897 UNC13AQ9UPW8 1703 aa16.38■□□□□ 0.21
PNKP-229ENST00000637897 PABPN1Q86U42 306 aaKnown RBP eCLIP16.36■□□□□ 0.21
PNKP-229ENST00000637897 BICRAQ9NZM4 1560 aa16.32■□□□□ 0.2
PNKP-229ENST00000637897 DCAF1Q9Y4B6 1507 aa16.28■□□□□ 0.2
PNKP-229ENST00000637897 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
PNKP-229ENST00000637897 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
PNKP-229ENST00000637897 EIF4G1Q04637 1599 aaKnown RBP15.83■□□□□ 0.12
PNKP-229ENST00000637897 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.12
PNKP-229ENST00000637897 CECR2Q9BXF3 1484 aa15.74■□□□□ 0.11
PNKP-229ENST00000637897 DNAJC5Q9H3Z4 198 aa15.39■□□□□ 0.05
PNKP-229ENST00000637897 NCAPD3P42695 1498 aa15.38■□□□□ 0.05
PNKP-229ENST00000637897 ATAD2BQ9ULI0 1458 aa15.36■□□□□ 0.05
PNKP-229ENST00000637897 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
PNKP-229ENST00000637897 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
PNKP-229ENST00000637897 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
PNKP-229ENST00000637897 HMGXB3Q12766 1538 aa15.23■□□□□ 0.03
PNKP-229ENST00000637897 SMARCA2P51531 1590 aa15.23■□□□□ 0.03
PNKP-229ENST00000637897 PEG3Q9GZU2 1588 aa15.22■□□□□ 0.03
PNKP-229ENST00000637897 NESP48681 1621 aa15.14■□□□□ 0.01
PNKP-229ENST00000637897 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
PNKP-229ENST00000637897 WIZO95785 1651 aa15.05■□□□□ -0
PNKP-229ENST00000637897 ERCC6Q03468 1493 aa15□□□□□ -0.01
PNKP-229ENST00000637897 RSF1Q96T23 1441 aaPredicted RBP14.98□□□□□ -0.01
PNKP-229ENST00000637897 CUX2O14529 1486 aa14.97□□□□□ -0.01
PNKP-229ENST00000637897 LAMC3Q9Y6N6 1575 aa14.94□□□□□ -0.02
PNKP-229ENST00000637897 THOC2Q8NI27 1593 aaKnown RBP14.93□□□□□ -0.02
PNKP-229ENST00000637897 CADPSQ9ULU8 1353 aa14.89□□□□□ -0.03
PNKP-229ENST00000637897 KIF21AQ7Z4S6 1674 aa14.89□□□□□ -0.03
PNKP-229ENST00000637897 TOP2AP11388 1531 aaKnown RBP14.82□□□□□ -0.04
PNKP-229ENST00000637897 PDS5BQ9NTI5 1447 aa14.82□□□□□ -0.04
PNKP-229ENST00000637897 CFTRP13569 1480 aa14.77□□□□□ -0.04
PNKP-229ENST00000637897 MRC2Q9UBG0 1479 aa14.73□□□□□ -0.05
PNKP-229ENST00000637897 WDR62O43379 1518 aa14.72□□□□□ -0.05
PNKP-229ENST00000637897 FANCD2Q9BXW9 1451 aa14.71□□□□□ -0.05
PNKP-229ENST00000637897 CCDC88BA6NC98 1476 aa14.7□□□□□ -0.06
PNKP-229ENST00000637897 CEP164Q9UPV0 1460 aa14.67□□□□□ -0.06
PNKP-229ENST00000637897 URB2Q14146 1524 aaKnown RBP14.65□□□□□ -0.06
PNKP-229ENST00000637897 PRDM2Q13029 1718 aa14.55□□□□□ -0.08
PNKP-229ENST00000637897 TOPBP1Q92547 1522 aa14.47□□□□□ -0.09
PNKP-229ENST00000637897 ZNF608Q9ULD9 1512 aaPredicted RBP14.46□□□□□ -0.1
PNKP-229ENST00000637897 DNMBPQ6XZF7 1577 aa14.39□□□□□ -0.11
PNKP-229ENST00000637897 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
PNKP-229ENST00000637897 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
PNKP-229ENST00000637897 TARBP1Q13395 1621 aaKnown RBP14.36□□□□□ -0.11
PNKP-229ENST00000637897 POLA1P09884 1462 aaPredicted RBP14.34□□□□□ -0.11
PNKP-229ENST00000637897 ABCC8Q09428 1581 aa14.34□□□□□ -0.11
PNKP-229ENST00000637897 SUPT5HO00267 1087 aaKnown RBP14.33□□□□□ -0.12
PNKP-229ENST00000637897 AQRO60306 1485 aaKnown RBP eCLIP14.31□□□□□ -0.123e-7■■■■□ 20.5
PNKP-229ENST00000637897 RAD54L2Q9Y4B4 1467 aa14.31□□□□□ -0.12
PNKP-229ENST00000637897 CUX1P39880 1505 aa14.31□□□□□ -0.12
PNKP-229ENST00000637897 EIF4G3O43432 1585 aaKnown RBP14.3□□□□□ -0.12
PNKP-229ENST00000637897 OSCARQ8IYS5 282 aa14.3□□□□□ -0.12
PNKP-229ENST00000637897 FGD5Q6ZNL6 1462 aa14.25□□□□□ -0.13
PNKP-229ENST00000637897 SOGA1O94964 1423 aa14.24□□□□□ -0.13
PNKP-229ENST00000637897 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
PNKP-229ENST00000637897 CHD1O14646 1710 aa14.18□□□□□ -0.14
PNKP-229ENST00000637897 WDR97A6NE52 1622 aa14.17□□□□□ -0.14
PNKP-229ENST00000637897 RIMBP3CA6NJZ7 1639 aa14.16□□□□□ -0.14
PNKP-229ENST00000637897 RIMBP3BA6NNM3 1639 aa14.16□□□□□ -0.14
PNKP-229ENST00000637897 RIMBP3Q9UFD9 1639 aa14.16□□□□□ -0.14
PNKP-229ENST00000637897 SNAPC4Q5SXM2 1469 aa14.13□□□□□ -0.15
PNKP-229ENST00000637897 ARHGEF11O15085 1522 aa14.13□□□□□ -0.15
PNKP-229ENST00000637897 ABCA10Q8WWZ4 1543 aa14.1□□□□□ -0.15
PNKP-229ENST00000637897 SYNJ1O43426 1573 aa14.09□□□□□ -0.15
PNKP-229ENST00000637897 GRIN2BQ13224 1484 aa14.08□□□□□ -0.16
PNKP-229ENST00000637897 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
PNKP-229ENST00000637897 FBLN2P98095 1184 aa14.07□□□□□ -0.16
PNKP-229ENST00000637897 GAPVD1Q14C86 1478 aa14.06□□□□□ -0.16
PNKP-229ENST00000637897 TOP2BQ02880 1626 aa14.06□□□□□ -0.16
PNKP-229ENST00000637897 BIVM-ERCC5R4GMW8 1640 aa14.06□□□□□ -0.16
PNKP-229ENST00000637897 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
PNKP-229ENST00000637897 CLASP1Q7Z460 1538 aa14.05□□□□□ -0.16
PNKP-229ENST00000637897 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
PNKP-229ENST00000637897 PBRM1Q86U86 1689 aa14.04□□□□□ -0.16
PNKP-229ENST00000637897 ARAP1Q96P48 1450 aa14.04□□□□□ -0.16
PNKP-229ENST00000637897 SYNJ2O15056 1496 aa14.02□□□□□ -0.16
PNKP-229ENST00000637897 CYB5RLQ6IPT4 315 aa13.99□□□□□ -0.17
PNKP-229ENST00000637897 CHMP7Q8WUX9 453 aaPredicted RBP13.99□□□□□ -0.17
PNKP-229ENST00000637897 ADAMTS12P58397 1594 aa13.95□□□□□ -0.18
PNKP-229ENST00000637897 GRIN2AQ12879 1464 aa13.93□□□□□ -0.18
PNKP-229ENST00000637897 CEP170Q5SW79 1584 aa13.92□□□□□ -0.18
PNKP-229ENST00000637897 ERCC6L2Q5T890 1561 aa13.92□□□□□ -0.18
PNKP-229ENST00000637897 NUP160Q12769 1436 aa13.91□□□□□ -0.18
PNKP-229ENST00000637897 ERICH3Q5RHP9 1530 aa13.89□□□□□ -0.19
PNKP-229ENST00000637897 FHAD1B1AJZ9 1412 aa13.89□□□□□ -0.19
PNKP-229ENST00000637897 IGF1RP08069 1367 aa13.83□□□□□ -0.2
PNKP-229ENST00000637897 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
PNKP-229ENST00000637897 RUSC2Q8N2Y8 1516 aa13.74□□□□□ -0.21
PNKP-229ENST00000637897 KIF27Q86VH2 1401 aa13.73□□□□□ -0.21
PNKP-229ENST00000637897 JPH4Q96JJ6 628 aa13.73□□□□□ -0.21
PNKP-229ENST00000637897 PRG4Q92954 1404 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms