RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 NCOA1Q15788 1441 aa26.77■■□□□ 1.88
HMGN3-203ENST00000620514 FBXO41Q8TF61 875 aa26.77■■□□□ 1.88
HMGN3-203ENST00000620514 DMRT2Q9Y5R5 561 aa26.77■■□□□ 1.88
HMGN3-203ENST00000620514 FAM135AQ9P2D6 1515 aa26.76■■□□□ 1.87
HMGN3-203ENST00000620514 CAMSAP1Q5T5Y3 1602 aa26.76■■□□□ 1.87
HMGN3-203ENST00000620514 FBXO31Q5XUX0 539 aaPredicted RBP26.75■■□□□ 1.87
HMGN3-203ENST00000620514 CROCC2H7BZ55 1655 aa26.75■■□□□ 1.87
HMGN3-203ENST00000620514 DAPK1P53355 1430 aa26.74■■□□□ 1.87
HMGN3-203ENST00000620514 ZNF142P52746 1687 aaPredicted RBP26.74■■□□□ 1.87
HMGN3-203ENST00000620514 RNF17Q9BXT8 1623 aaKnown RBP26.74■■□□□ 1.87
HMGN3-203ENST00000620514 SHANK2Q9UPX8 1470 aa26.74■■□□□ 1.87
HMGN3-203ENST00000620514 CEP170BQ9Y4F5 1589 aaPredicted RBP26.73■■□□□ 1.87
HMGN3-203ENST00000620514 PZPP20742 1482 aa26.73■■□□□ 1.87
HMGN3-203ENST00000620514 DNMT1P26358 1616 aaKnown RBP26.72■■□□□ 1.87
HMGN3-203ENST00000620514 EIF2AK4Q9P2K8 1649 aaKnown RBP26.72■■□□□ 1.87
HMGN3-203ENST00000620514 DUOX2Q9NRD8 1548 aa26.72■■□□□ 1.87
HMGN3-203ENST00000620514 PTPRTO14522 1441 aa26.72■■□□□ 1.87
HMGN3-203ENST00000620514 KIF15Q9NS87 1388 aa26.71■■□□□ 1.87
HMGN3-203ENST00000620514 CERKQ8TCT0 537 aa26.7■■□□□ 1.86
HMGN3-203ENST00000620514 RRP7BPQ9NSQ0 103 aa26.7■■□□□ 1.86
HMGN3-203ENST00000620514 MROH1Q8NDA8 1641 aa26.69■■□□□ 1.86
HMGN3-203ENST00000620514 TNRQ92752 1358 aa26.69■■□□□ 1.86
HMGN3-203ENST00000620514 NCKAP5LQ9HCH0 1330 aa26.68■■□□□ 1.86
HMGN3-203ENST00000620514 ABCC3O15438 1527 aa26.68■■□□□ 1.86
HMGN3-203ENST00000620514 CHIC2Q9UKJ5 165 aa26.67■■□□□ 1.86
HMGN3-203ENST00000620514 A2ML1A8K2U0 1454 aa26.67■■□□□ 1.86
HMGN3-203ENST00000620514 PLA2R1Q13018 1463 aa26.63■■□□□ 1.85
HMGN3-203ENST00000620514 ERBINQ96RT1 1412 aa26.63■■□□□ 1.85
HMGN3-203ENST00000620514 ZC3H13Q5T200 1668 aaKnown RBP26.63■■□□□ 1.85
HMGN3-203ENST00000620514 FAM50AQ14320 339 aaKnown RBP26.62■■□□□ 1.85
HMGN3-203ENST00000620514 CEP152O94986 1710 aa26.61■■□□□ 1.85
HMGN3-203ENST00000620514 ANKRD30AQ9BXX3 1397 aa26.59■■□□□ 1.85
HMGN3-203ENST00000620514 PKD2Q13563 968 aa26.59■■□□□ 1.85
HMGN3-203ENST00000620514 PRDM15P57071 1507 aaPredicted RBP26.57■■□□□ 1.84
HMGN3-203ENST00000620514 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.56■■□□□ 1.843e-7■□□□□ 8.9
HMGN3-203ENST00000620514 SPATA31D1Q6ZQQ2 1576 aa26.55■■□□□ 1.84
HMGN3-203ENST00000620514 ERVK-7P63135 1459 aa26.55■■□□□ 1.84
HMGN3-203ENST00000620514 NLRP1Q9C000 1473 aa26.55■■□□□ 1.84
HMGN3-203ENST00000620514 LTBP4Q8N2S1 1624 aa26.54■■□□□ 1.84
HMGN3-203ENST00000620514 PPARGC1BQ86YN6 1023 aaKnown RBP26.54■■□□□ 1.84
HMGN3-203ENST00000620514 ADGRL2O95490 1459 aa26.53■■□□□ 1.84
HMGN3-203ENST00000620514 DEPDC5O75140 1603 aa26.52■■□□□ 1.84
HMGN3-203ENST00000620514 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.5■■□□□ 1.83
HMGN3-203ENST00000620514 CFAP65Q6ZU64 1925 aaKnown RBP26.5■■□□□ 1.83
HMGN3-203ENST00000620514 UGGT1Q9NYU2 1555 aa26.5■■□□□ 1.83
HMGN3-203ENST00000620514 ZNF335Q9H4Z2 1342 aaPredicted RBP26.49■■□□□ 1.83
HMGN3-203ENST00000620514 THEMISQ8N1K5 641 aaPredicted RBP26.48■■□□□ 1.83
HMGN3-203ENST00000620514 ARHGAP31Q2M1Z3 1444 aa26.47■■□□□ 1.83
HMGN3-203ENST00000620514 KANK1Q14678 1352 aa26.46■■□□□ 1.83
HMGN3-203ENST00000620514 NEURL4Q96JN8 1562 aa26.46■■□□□ 1.83
HMGN3-203ENST00000620514 POLR1AO95602 1720 aaPredicted RBP26.45■■□□□ 1.83
HMGN3-203ENST00000620514 VWDEQ8N2E2 1590 aa26.44■■□□□ 1.82
HMGN3-203ENST00000620514 ANKLE2Q86XL3 938 aa26.43■■□□□ 1.82
HMGN3-203ENST00000620514 ANKRD50Q9ULJ7 1429 aa26.42■■□□□ 1.82
HMGN3-203ENST00000620514 LMTK2Q8IWU2 1503 aa26.41■■□□□ 1.82
HMGN3-203ENST00000620514 UBR1Q8IWV7 1749 aa26.36■■□□□ 1.81
HMGN3-203ENST00000620514 NPHP4O75161 1426 aaPredicted RBP26.36■■□□□ 1.81
HMGN3-203ENST00000620514 IQSEC2Q5JU85 1478 aa26.36■■□□□ 1.81
HMGN3-203ENST00000620514 ITGAEP38570 1179 aa26.35■■□□□ 1.81
HMGN3-203ENST00000620514 MED14O60244 1454 aa26.35■■□□□ 1.81
HMGN3-203ENST00000620514 EFCAB6Q5THR3 1501 aa26.34■■□□□ 1.81
HMGN3-203ENST00000620514 ROCK1Q13464 1354 aa26.33■■□□□ 1.8
HMGN3-203ENST00000620514 PIK3C2BO00750 1634 aa26.31■■□□□ 1.8
HMGN3-203ENST00000620514 SYNMO15061 1565 aa26.29■■□□□ 1.8
HMGN3-203ENST00000620514 IQGAP1P46940 1657 aa26.29■■□□□ 1.8
HMGN3-203ENST00000620514 IDI1Q13907 227 aa26.28■■□□□ 1.8
HMGN3-203ENST00000620514 NOS1P29475 1434 aa26.28■■□□□ 1.8
HMGN3-203ENST00000620514 ARHGAP23Q9P227 1491 aa26.28■■□□□ 1.8
HMGN3-203ENST00000620514 LTKP29376 864 aa26.27■■□□□ 1.8
HMGN3-203ENST00000620514 UNC13BO14795 1591 aa26.26■■□□□ 1.79
HMGN3-203ENST00000620514 SLIT1O75093 1534 aa26.26■■□□□ 1.79
HMGN3-203ENST00000620514 SCAF11Q99590 1463 aaKnown RBP26.25■■□□□ 1.79
HMGN3-203ENST00000620514 TXNDC2Q86VQ3 553 aa26.24■■□□□ 1.79
HMGN3-203ENST00000620514 STAG3Q9UJ98 1225 aa26.24■■□□□ 1.79
HMGN3-203ENST00000620514 TET3O43151 1660 aa26.23■■□□□ 1.79
HMGN3-203ENST00000620514 UBAP1LF5GYI3 381 aa26.22■■□□□ 1.79
HMGN3-203ENST00000620514 CPS1P31327 1500 aa26.22■■□□□ 1.79
HMGN3-203ENST00000620514 TMEM2Q9UHN6 1383 aa26.21■■□□□ 1.79
HMGN3-203ENST00000620514 RPRD2Q5VT52 1461 aaKnown RBP26.21■■□□□ 1.79
HMGN3-203ENST00000620514 RRBP1Q9P2E9 1410 aaKnown RBP26.21■■□□□ 1.79
HMGN3-203ENST00000620514 GCC2Q8IWJ2 1684 aa26.19■■□□□ 1.78
HMGN3-203ENST00000620514 EID1Q9Y6B2 187 aa26.18■■□□□ 1.78
HMGN3-203ENST00000620514 KDM5AP29375 1690 aaKnown RBP26.18■■□□□ 1.78
HMGN3-203ENST00000620514 SLC52A1Q9NWF4 448 aa26.17■■□□□ 1.78
HMGN3-203ENST00000620514 ADGRB3O60242 1522 aa26.17■■□□□ 1.78
HMGN3-203ENST00000620514 STRCP1A6NGW2 1772 aa26.16■■□□□ 1.78
HMGN3-203ENST00000620514 IQGAP3Q86VI3 1631 aa26.16■■□□□ 1.78
HMGN3-203ENST00000620514 NUP155O75694 1391 aa26.15■■□□□ 1.78
HMGN3-203ENST00000620514 E9PCH4 1651 aa26.14■■□□□ 1.78
HMGN3-203ENST00000620514 LRRC7Q96NW7 1537 aa26.09■■□□□ 1.77
HMGN3-203ENST00000620514 MYO5BQ9ULV0 1848 aa26.07■■□□□ 1.76
HMGN3-203ENST00000620514 TMEM131LA2VDJ0 1609 aa26.05■■□□□ 1.76
HMGN3-203ENST00000620514 NAIPQ13075 1403 aa26.05■■□□□ 1.76
HMGN3-203ENST00000620514 TOM1O60784 492 aa26.04■■□□□ 1.76
HMGN3-203ENST00000620514 CHGAP10645 457 aaKnown RBP26.04■■□□□ 1.76
HMGN3-203ENST00000620514 PIP4K2BP78356 416 aa26.04■■□□□ 1.76
HMGN3-203ENST00000620514 SCAF1Q9H7N4 1312 aaKnown RBP26.04■■□□□ 1.76
HMGN3-203ENST00000620514 SLC26A8Q96RN1 970 aa26.03■■□□□ 1.76
HMGN3-203ENST00000620514 SENP3Q9H4L4 574 aaPredicted RBP26.03■■□□□ 1.76
HMGN3-203ENST00000620514 ZFYVE9O95405 1425 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms