RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 EIF2AK4Q9P2K8 1649 aaKnown RBP35.47■■■■□ 3.27
SSBP4-209ENST00000601357 FGD6Q6ZV73 1430 aa35.47■■■■□ 3.27
SSBP4-209ENST00000601357 TCOF1Q13428 1488 aaKnown RBP35.47■■■■□ 3.27
SSBP4-209ENST00000601357 DMRT2Q9Y5R5 561 aa35.46■■■■□ 3.27
SSBP4-209ENST00000601357 NCOA1Q15788 1441 aa35.46■■■■□ 3.27
SSBP4-209ENST00000601357 SHANK2Q9UPX8 1470 aa35.45■■■■□ 3.27
SSBP4-209ENST00000601357 FBXO41Q8TF61 875 aa35.44■■■■□ 3.26
SSBP4-209ENST00000601357 CEP170BQ9Y4F5 1589 aaPredicted RBP35.43■■■■□ 3.26
SSBP4-209ENST00000601357 ABCC5O15440 1437 aa35.43■■■■□ 3.26
SSBP4-209ENST00000601357 CAMSAP1Q5T5Y3 1602 aa35.43■■■■□ 3.26
SSBP4-209ENST00000601357 DNMT1P26358 1616 aaKnown RBP35.42■■■■□ 3.26
SSBP4-209ENST00000601357 PTPRTO14522 1441 aa35.41■■■■□ 3.26
SSBP4-209ENST00000601357 PZPP20742 1482 aa35.41■■■■□ 3.26
SSBP4-209ENST00000601357 WASHC2CQ9Y4E1 1318 aa35.39■■■■□ 3.26
SSBP4-209ENST00000601357 DUOX2Q9NRD8 1548 aa35.39■■■■□ 3.26
SSBP4-209ENST00000601357 MROH1Q8NDA8 1641 aa35.38■■■■□ 3.25
SSBP4-209ENST00000601357 DAPK1P53355 1430 aa35.38■■■■□ 3.25
SSBP4-209ENST00000601357 ZC3H13Q5T200 1668 aaKnown RBP35.37■■■■□ 3.25
SSBP4-209ENST00000601357 ABCC3O15438 1527 aa35.33■■■■□ 3.25
SSBP4-209ENST00000601357 PLA2R1Q13018 1463 aa35.33■■■■□ 3.25
SSBP4-209ENST00000601357 FBXO31Q5XUX0 539 aaPredicted RBP35.32■■■■□ 3.24
SSBP4-209ENST00000601357 A2ML1A8K2U0 1454 aa35.32■■■■□ 3.24
SSBP4-209ENST00000601357 KIF15Q9NS87 1388 aa35.31■■■■□ 3.24
SSBP4-209ENST00000601357 CERKQ8TCT0 537 aa35.31■■■■□ 3.24
SSBP4-209ENST00000601357 TNRQ92752 1358 aa35.29■■■■□ 3.24
SSBP4-209ENST00000601357 ERBINQ96RT1 1412 aa35.28■■■■□ 3.24
SSBP4-209ENST00000601357 PRDM15P57071 1507 aaPredicted RBP35.24■■■■□ 3.23
SSBP4-209ENST00000601357 CEP152O94986 1710 aa35.23■■■■□ 3.23
SSBP4-209ENST00000601357 RRP7BPQ9NSQ0 103 aa35.23■■■■□ 3.23
SSBP4-209ENST00000601357 DEPDC5O75140 1603 aa35.21■■■■□ 3.23
SSBP4-209ENST00000601357 NCKAP5LQ9HCH0 1330 aa35.21■■■■□ 3.23
SSBP4-209ENST00000601357 PKD2Q13563 968 aa35.2■■■■□ 3.23
SSBP4-209ENST00000601357 SPATA31D1Q6ZQQ2 1576 aa35.2■■■■□ 3.23
SSBP4-209ENST00000601357 NLRP1Q9C000 1473 aa35.19■■■■□ 3.22
SSBP4-209ENST00000601357 LTBP4Q8N2S1 1624 aa35.18■■■■□ 3.22
SSBP4-209ENST00000601357 ANKRD30AQ9BXX3 1397 aa35.18■■■■□ 3.22
SSBP4-209ENST00000601357 ADGRL2O95490 1459 aa35.16■■■■□ 3.22
SSBP4-209ENST00000601357 ERVK-7P63135 1459 aa35.14■■■■□ 3.22
SSBP4-209ENST00000601357 CHIC2Q9UKJ5 165 aa35.13■■■■□ 3.21
SSBP4-209ENST00000601357 POLR1AO95602 1720 aaPredicted RBP35.12■■■■□ 3.21
SSBP4-209ENST00000601357 UGGT1Q9NYU2 1555 aa35.09■■■■□ 3.21
SSBP4-209ENST00000601357 ARHGAP31Q2M1Z3 1444 aa35.09■■■■□ 3.21
SSBP4-209ENST00000601357 FAM50AQ14320 339 aaKnown RBP35.09■■■■□ 3.21
SSBP4-209ENST00000601357 NEURL4Q96JN8 1562 aa35.08■■■■□ 3.21
SSBP4-209ENST00000601357 VWDEQ8N2E2 1590 aa35.06■■■■□ 3.2
SSBP4-209ENST00000601357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.02■■■■□ 3.27e-7■■■■□ 20
SSBP4-209ENST00000601357 LMTK2Q8IWU2 1503 aa35.02■■■■□ 3.2
SSBP4-209ENST00000601357 THEMISQ8N1K5 641 aaPredicted RBP35.02■■■■□ 3.2
SSBP4-209ENST00000601357 CFAP65Q6ZU64 1925 aaKnown RBP35.02■■■■□ 3.2
SSBP4-209ENST00000601357 IQSEC2Q5JU85 1478 aa35.02■■■■□ 3.2
SSBP4-209ENST00000601357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35■■■■□ 3.19
SSBP4-209ENST00000601357 ZNF335Q9H4Z2 1342 aaPredicted RBP35■■■■□ 3.19
SSBP4-209ENST00000601357 KANK1Q14678 1352 aa35■■■■□ 3.19
SSBP4-209ENST00000601357 UBR1Q8IWV7 1749 aa34.97■■■■□ 3.19
SSBP4-209ENST00000601357 MED14O60244 1454 aa34.95■■■■□ 3.19
SSBP4-209ENST00000601357 ANKLE2Q86XL3 938 aa34.94■■■■□ 3.18
SSBP4-209ENST00000601357 ANKRD50Q9ULJ7 1429 aa34.94■■■■□ 3.18
SSBP4-209ENST00000601357 EFCAB6Q5THR3 1501 aa34.91■■■■□ 3.18
SSBP4-209ENST00000601357 ROCK1Q13464 1354 aa34.87■■■■□ 3.17
SSBP4-209ENST00000601357 NPHP4O75161 1426 aaPredicted RBP34.87■■■■□ 3.17
SSBP4-209ENST00000601357 IQGAP1P46940 1657 aa34.86■■■■□ 3.17
SSBP4-209ENST00000601357 PPARGC1BQ86YN6 1023 aaKnown RBP34.85■■■■□ 3.17
SSBP4-209ENST00000601357 PIK3C2BO00750 1634 aa34.84■■■■□ 3.17
SSBP4-209ENST00000601357 UNC13BO14795 1591 aa34.83■■■■□ 3.17
SSBP4-209ENST00000601357 SYNMO15061 1565 aa34.83■■■■□ 3.17
SSBP4-209ENST00000601357 SLIT1O75093 1534 aa34.82■■■■□ 3.16
SSBP4-209ENST00000601357 ARHGAP23Q9P227 1491 aa34.82■■■■□ 3.16
SSBP4-209ENST00000601357 KDM5AP29375 1690 aaKnown RBP34.81■■■■□ 3.16
SSBP4-209ENST00000601357 NOS1P29475 1434 aa34.81■■■■□ 3.16
SSBP4-209ENST00000601357 CPS1P31327 1500 aa34.78■■■■□ 3.16
SSBP4-209ENST00000601357 TET3O43151 1660 aa34.78■■■■□ 3.16
SSBP4-209ENST00000601357 RPRD2Q5VT52 1461 aaKnown RBP34.78■■■■□ 3.16
SSBP4-209ENST00000601357 SCAF11Q99590 1463 aaKnown RBP34.76■■■■□ 3.15
SSBP4-209ENST00000601357 GCC2Q8IWJ2 1684 aa34.73■■■■□ 3.15
SSBP4-209ENST00000601357 IDI1Q13907 227 aa34.72■■■■□ 3.15
SSBP4-209ENST00000601357 RRBP1Q9P2E9 1410 aaKnown RBP34.7■■■■□ 3.15
SSBP4-209ENST00000601357 LTKP29376 864 aa34.69■■■■□ 3.14
SSBP4-209ENST00000601357 TMEM2Q9UHN6 1383 aa34.69■■■■□ 3.14
SSBP4-209ENST00000601357 IQGAP3Q86VI3 1631 aa34.68■■■■□ 3.14
SSBP4-209ENST00000601357 ITGAEP38570 1179 aa34.67■■■■□ 3.14
SSBP4-209ENST00000601357 STRCP1A6NGW2 1772 aa34.67■■■■□ 3.14
SSBP4-209ENST00000601357 ADGRB3O60242 1522 aa34.66■■■■□ 3.14
SSBP4-209ENST00000601357 TXNDC2Q86VQ3 553 aa34.66■■■■□ 3.14
SSBP4-209ENST00000601357 E9PCH4 1651 aa34.63■■■■□ 3.13
SSBP4-209ENST00000601357 SLC52A1Q9NWF4 448 aa34.63■■■■□ 3.13
SSBP4-209ENST00000601357 UBAP1LF5GYI3 381 aa34.61■■■■□ 3.13
SSBP4-209ENST00000601357 STAG3Q9UJ98 1225 aa34.61■■■■□ 3.13
SSBP4-209ENST00000601357 EID1Q9Y6B2 187 aa34.61■■■■□ 3.13
SSBP4-209ENST00000601357 NUP155O75694 1391 aa34.54■■■■□ 3.12
SSBP4-209ENST00000601357 LRRC7Q96NW7 1537 aa34.54■■■■□ 3.12
SSBP4-209ENST00000601357 MYO5BQ9ULV0 1848 aa34.53■■■■□ 3.12
SSBP4-209ENST00000601357 TMEM131LA2VDJ0 1609 aa34.53■■■■□ 3.12
SSBP4-209ENST00000601357 ALKQ9UM73 1620 aa34.48■■■■□ 3.11
SSBP4-209ENST00000601357 ZFYVE9O95405 1425 aa34.47■■■■□ 3.11
SSBP4-209ENST00000601357 NAIPQ13075 1403 aa34.45■■■■□ 3.11
SSBP4-209ENST00000601357 TOM1O60784 492 aa34.44■■■■□ 3.1
SSBP4-209ENST00000601357 XIRP1Q702N8 1843 aaKnown RBP34.4■■■■□ 3.1
SSBP4-209ENST00000601357 RIMS2Q9UQ26 1411 aa34.38■■■■□ 3.09
SSBP4-209ENST00000601357 SPHKAPQ2M3C7 1700 aa34.37■■■■□ 3.09
SSBP4-209ENST00000601357 HFM1A2PYH4 1435 aa34.36■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms