RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 NISCHQ9Y2I1 1504 aa56.33■■■■■ 6.61
SSBP4-209ENST00000601357 CCDC180Q9P1Z9 1646 aa50.4■■■■■ 5.66
SSBP4-209ENST00000601357 ABCC9O60706 1549 aa49.8■■■■■ 5.56
SSBP4-209ENST00000601357 RB1CC1Q8TDY2 1594 aa47.68■■■■■ 5.22
SSBP4-209ENST00000601357 NACADO15069 1562 aa47.49■■■■■ 5.19
SSBP4-209ENST00000601357 DCAF8L2P0C7V8 631 aa47.13■■■■■ 5.14
SSBP4-209ENST00000601357 MYO15BQ96JP2 1530 aa47.05■■■■■ 5.12
SSBP4-209ENST00000601357 ZCCHC6Q5VYS8 1495 aaKnown RBP46.8■■■■■ 5.08
SSBP4-209ENST00000601357 UNC13AQ9UPW8 1703 aa46.67■■■■■ 5.06
SSBP4-209ENST00000601357 DCAF1Q9Y4B6 1507 aa46.61■■■■■ 5.05
SSBP4-209ENST00000601357 PABPN1Q86U42 306 aaKnown RBP eCLIP46.4■■■■■ 5.021e-7■■□□□ 13.1
SSBP4-209ENST00000601357 BICRAQ9NZM4 1560 aa46.32■■■■■ 5.01
SSBP4-209ENST00000601357 DNAJC5BQ9UF47 199 aa46.32■■■■■ 5.01
SSBP4-209ENST00000601357 SCRIBQ14160 1630 aa45.86■■■■■ 4.93
SSBP4-209ENST00000601357 SHROOM4Q9ULL8 1493 aa45.76■■■■■ 4.92
SSBP4-209ENST00000601357 EIF4G1Q04637 1599 aaKnown RBP45.11■■■■■ 4.81
SSBP4-209ENST00000601357 CC2D2AQ9P2K1 1620 aa45.08■■■■■ 4.81
SSBP4-209ENST00000601357 CECR2Q9BXF3 1484 aa44.84■■■■■ 4.77
SSBP4-209ENST00000601357 SMARCA4P51532 1647 aa43.84■■■■■ 4.61
SSBP4-209ENST00000601357 NCAPD3P42695 1498 aa43.83■■■■■ 4.61
SSBP4-209ENST00000601357 ATAD2BQ9ULI0 1458 aa43.75■■■■■ 4.59
SSBP4-209ENST00000601357 BAZ1AQ9NRL2 1556 aaPredicted RBP43.69■■■■■ 4.58
SSBP4-209ENST00000601357 SMARCA2P51531 1590 aa43.66■■■■■ 4.58
SSBP4-209ENST00000601357 HMGXB3Q12766 1538 aa43.57■■■■■ 4.56
SSBP4-209ENST00000601357 PEG3Q9GZU2 1588 aa43.47■■■■■ 4.55
SSBP4-209ENST00000601357 MROH2BQ7Z745 1585 aa43.4■■■■■ 4.54
SSBP4-209ENST00000601357 BAZ1BQ9UIG0 1483 aaKnown RBP43.32■■■■■ 4.53
SSBP4-209ENST00000601357 NESP48681 1621 aa42.95■■■■■ 4.47
SSBP4-209ENST00000601357 ERCC6Q03468 1493 aa42.94■■■■■ 4.47
SSBP4-209ENST00000601357 WIZO95785 1651 aa42.9■■■■■ 4.46
SSBP4-209ENST00000601357 CUX2O14529 1486 aa42.79■■■■■ 4.44
SSBP4-209ENST00000601357 LAMC3Q9Y6N6 1575 aa42.78■■■■■ 4.44
SSBP4-209ENST00000601357 RSF1Q96T23 1441 aaPredicted RBP42.66■■■■■ 4.42
SSBP4-209ENST00000601357 THOC2Q8NI27 1593 aaKnown RBP42.49■■■■■ 4.39
SSBP4-209ENST00000601357 CADPSQ9ULU8 1353 aa42.48■■■■■ 4.39
SSBP4-209ENST00000601357 KIF21AQ7Z4S6 1674 aa42.46■■■■■ 4.39
SSBP4-209ENST00000601357 PDS5BQ9NTI5 1447 aa42.46■■■■■ 4.39
SSBP4-209ENST00000601357 TOP2AP11388 1531 aaKnown RBP42.41■■■■■ 4.38
SSBP4-209ENST00000601357 DNAJC5Q9H3Z4 198 aa42.18■■■■■ 4.34
SSBP4-209ENST00000601357 CFTRP13569 1480 aa42.14■■■■■ 4.34
SSBP4-209ENST00000601357 MRC2Q9UBG0 1479 aa42.08■■■■■ 4.33
SSBP4-209ENST00000601357 WDR62O43379 1518 aa42■■■■■ 4.31
SSBP4-209ENST00000601357 FANCD2Q9BXW9 1451 aa42■■■■■ 4.31
SSBP4-209ENST00000601357 CEP164Q9UPV0 1460 aa42■■■■■ 4.31
SSBP4-209ENST00000601357 CCDC88BA6NC98 1476 aa41.9■■■■■ 4.3
SSBP4-209ENST00000601357 PRDM2Q13029 1718 aa41.81■■■■■ 4.28
SSBP4-209ENST00000601357 URB2Q14146 1524 aaKnown RBP41.65■■■■■ 4.26
SSBP4-209ENST00000601357 TOPBP1Q92547 1522 aa41.28■■■■■ 4.2
SSBP4-209ENST00000601357 ABCC8Q09428 1581 aa41.22■■■■■ 4.19
SSBP4-209ENST00000601357 DNMBPQ6XZF7 1577 aa41.18■■■■■ 4.18
SSBP4-209ENST00000601357 IFT140Q96RY7 1462 aa41.15■■■■■ 4.18
SSBP4-209ENST00000601357 ZNF608Q9ULD9 1512 aaPredicted RBP41.04■■■■■ 4.16
SSBP4-209ENST00000601357 SUPT5HO00267 1087 aaKnown RBP40.98■■■■■ 4.15
SSBP4-209ENST00000601357 TARBP1Q13395 1621 aaKnown RBP40.92■■■■■ 4.14
SSBP4-209ENST00000601357 POLA1P09884 1462 aaPredicted RBP40.89■■■■■ 4.14
SSBP4-209ENST00000601357 EIF4G3O43432 1585 aaKnown RBP40.87■■■■■ 4.13
SSBP4-209ENST00000601357 OSCARQ8IYS5 282 aa40.83■■■■■ 4.13
SSBP4-209ENST00000601357 CUX1P39880 1505 aa40.75■■■■■ 4.11
SSBP4-209ENST00000601357 AQRO60306 1485 aaKnown RBP eCLIP40.7■■■■■ 4.118e-8■■■■■ 50.9
SSBP4-209ENST00000601357 FGD5Q6ZNL6 1462 aa40.69■■■■■ 4.1
SSBP4-209ENST00000601357 RAD54L2Q9Y4B4 1467 aa40.69■■■■■ 4.1
SSBP4-209ENST00000601357 SOGA1O94964 1423 aa40.67■■■■■ 4.1
SSBP4-209ENST00000601357 WDR97A6NE52 1622 aa40.56■■■■■ 4.08
SSBP4-209ENST00000601357 TDRD9Q8NDG6 1382 aaKnown RBP40.51■■■■■ 4.08
SSBP4-209ENST00000601357 CHD1O14646 1710 aa40.47■■■■■ 4.07
SSBP4-209ENST00000601357 TRIM41Q8WV44 630 aa40.42■■■■■ 4.06
SSBP4-209ENST00000601357 RIMBP3CA6NJZ7 1639 aa40.33■■■■■ 4.05
SSBP4-209ENST00000601357 RIMBP3BA6NNM3 1639 aa40.33■■■■■ 4.05
SSBP4-209ENST00000601357 RIMBP3Q9UFD9 1639 aa40.33■■■■■ 4.05
SSBP4-209ENST00000601357 SNAPC4Q5SXM2 1469 aa40.32■■■■■ 4.04
SSBP4-209ENST00000601357 ABCA10Q8WWZ4 1543 aa40.28■■■■■ 4.04
SSBP4-209ENST00000601357 GRIN2BQ13224 1484 aa40.28■■■■■ 4.04
SSBP4-209ENST00000601357 MAGI1Q96QZ7 1491 aaPredicted RBP40.26■■■■■ 4.04
SSBP4-209ENST00000601357 BIVM-ERCC5R4GMW8 1640 aa40.26■■■■■ 4.04
SSBP4-209ENST00000601357 TOP2BQ02880 1626 aa40.24■■■■■ 4.03
SSBP4-209ENST00000601357 FBLN2P98095 1184 aa40.24■■■■■ 4.03
SSBP4-209ENST00000601357 ARHGEF11O15085 1522 aa40.24■■■■■ 4.03
SSBP4-209ENST00000601357 ABCA5Q8WWZ7 1642 aa40.21■■■■■ 4.03
SSBP4-209ENST00000601357 WRNQ14191 1432 aaPredicted RBP eCLIP40.21■■■■■ 4.03
SSBP4-209ENST00000601357 PBRM1Q86U86 1689 aa40.21■■■■■ 4.03
SSBP4-209ENST00000601357 SYNJ1O43426 1573 aa40.2■■■■■ 4.03
SSBP4-209ENST00000601357 GAPVD1Q14C86 1478 aa40.19■■■■■ 4.03
SSBP4-209ENST00000601357 SYNJ2O15056 1496 aa40.11■■■■■ 4.01
SSBP4-209ENST00000601357 CHMP7Q8WUX9 453 aaPredicted RBP40.06■■■■■ 4
SSBP4-209ENST00000601357 CLASP1Q7Z460 1538 aa40.05■■■■■ 4
SSBP4-209ENST00000601357 ARAP1Q96P48 1450 aa39.88■■■■□ 3.98
SSBP4-209ENST00000601357 ADAMTS12P58397 1594 aa39.84■■■■□ 3.97
SSBP4-209ENST00000601357 CYB5RLQ6IPT4 315 aa39.82■■■■□ 3.97
SSBP4-209ENST00000601357 ERICH3Q5RHP9 1530 aa39.79■■■■□ 3.96
SSBP4-209ENST00000601357 GRIN2AQ12879 1464 aa39.78■■■■□ 3.96
SSBP4-209ENST00000601357 FHAD1B1AJZ9 1412 aa39.72■■■■□ 3.95
SSBP4-209ENST00000601357 NUP160Q12769 1436 aa39.65■■■■□ 3.94
SSBP4-209ENST00000601357 CEP170Q5SW79 1584 aa39.64■■■■□ 3.94
SSBP4-209ENST00000601357 SHROOM2Q13796 1616 aa39.47■■■■□ 3.91
SSBP4-209ENST00000601357 ERCC6L2Q5T890 1561 aa39.42■■■■□ 3.9
SSBP4-209ENST00000601357 KIF27Q86VH2 1401 aa39.4■■■■□ 3.9
SSBP4-209ENST00000601357 IGF1RP08069 1367 aa39.35■■■■□ 3.89
SSBP4-209ENST00000601357 CUL7Q14999 1698 aa39.32■■■■□ 3.88
SSBP4-209ENST00000601357 RUSC2Q8N2Y8 1516 aa39.3■■■■□ 3.88
SSBP4-209ENST00000601357 TRHP20396 242 aaPredicted RBP39.18■■■■□ 3.86
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms