RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 DAPK1P53355 1430 aa19.02■□□□□ 0.64
LIG1-217ENST00000599165 KIF3BO15066 747 aa19.02■□□□□ 0.64
LIG1-217ENST00000599165 KDM5DQ9BY66 1539 aa19.01■□□□□ 0.63
LIG1-217ENST00000599165 PPP6R1Q9UPN7 881 aa19.01■□□□□ 0.63
LIG1-217ENST00000599165 FAM135AQ9P2D6 1515 aa19■□□□□ 0.63
LIG1-217ENST00000599165 MYO3AQ8NEV4 1616 aa19■□□□□ 0.63
LIG1-217ENST00000599165 ZNF142P52746 1687 aaPredicted RBP18.99■□□□□ 0.63
LIG1-217ENST00000599165 DUOX2Q9NRD8 1548 aa18.98■□□□□ 0.63
LIG1-217ENST00000599165 ABCC3O15438 1527 aa18.95■□□□□ 0.62
LIG1-217ENST00000599165 PZPP20742 1482 aa18.95■□□□□ 0.62
LIG1-217ENST00000599165 KIF15Q9NS87 1388 aa18.94■□□□□ 0.62
LIG1-217ENST00000599165 CEP170BQ9Y4F5 1589 aaPredicted RBP18.94■□□□□ 0.62
LIG1-217ENST00000599165 ZC3H13Q5T200 1668 aaKnown RBP18.94■□□□□ 0.62
LIG1-217ENST00000599165 CEP152O94986 1710 aa18.94■□□□□ 0.62
LIG1-217ENST00000599165 DEPDC5O75140 1603 aa18.92■□□□□ 0.62
LIG1-217ENST00000599165 NCOA1Q15788 1441 aa18.92■□□□□ 0.62
LIG1-217ENST00000599165 PRDM15P57071 1507 aaPredicted RBP18.92■□□□□ 0.62
LIG1-217ENST00000599165 FBXO31Q5XUX0 539 aaPredicted RBP18.92■□□□□ 0.62
LIG1-217ENST00000599165 CAMSAP1Q5T5Y3 1602 aa18.92■□□□□ 0.62
LIG1-217ENST00000599165 ERBINQ96RT1 1412 aa18.91■□□□□ 0.62
LIG1-217ENST00000599165 ADGRL2O95490 1459 aa18.91■□□□□ 0.62
LIG1-217ENST00000599165 ILDR1Q86SU0 546 aaPredicted RBP18.9■□□□□ 0.62
LIG1-217ENST00000599165 RRP7BPQ9NSQ0 103 aa18.9■□□□□ 0.62
LIG1-217ENST00000599165 WASHC2CQ9Y4E1 1318 aa18.9■□□□□ 0.62
LIG1-217ENST00000599165 CHIC2Q9UKJ5 165 aa18.88■□□□□ 0.61
LIG1-217ENST00000599165 A2ML1A8K2U0 1454 aa18.87■□□□□ 0.61
LIG1-217ENST00000599165 SPATA31D1Q6ZQQ2 1576 aa18.86■□□□□ 0.61
LIG1-217ENST00000599165 VWDEQ8N2E2 1590 aa18.86■□□□□ 0.61
LIG1-217ENST00000599165 TNRQ92752 1358 aa18.86■□□□□ 0.61
LIG1-217ENST00000599165 ANKRD30AQ9BXX3 1397 aa18.86■□□□□ 0.61
LIG1-217ENST00000599165 PTPRTO14522 1441 aa18.85■□□□□ 0.61
LIG1-217ENST00000599165 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
LIG1-217ENST00000599165 FAM50AQ14320 339 aaKnown RBP18.85■□□□□ 0.61
LIG1-217ENST00000599165 PPARGC1BQ86YN6 1023 aaKnown RBP18.85■□□□□ 0.61
LIG1-217ENST00000599165 PLA2R1Q13018 1463 aa18.84■□□□□ 0.61
LIG1-217ENST00000599165 ERVK-7P63135 1459 aa18.83■□□□□ 0.6
LIG1-217ENST00000599165 ARHGAP31Q2M1Z3 1444 aa18.8■□□□□ 0.6
LIG1-217ENST00000599165 LMTK2Q8IWU2 1503 aa18.79■□□□□ 0.6
LIG1-217ENST00000599165 NCKAP5LQ9HCH0 1330 aa18.79■□□□□ 0.6
LIG1-217ENST00000599165 NLRP1Q9C000 1473 aa18.79■□□□□ 0.6
LIG1-217ENST00000599165 NEURL4Q96JN8 1562 aa18.79■□□□□ 0.6
LIG1-217ENST00000599165 LTBP4Q8N2S1 1624 aa18.78■□□□□ 0.6
LIG1-217ENST00000599165 POLR1AO95602 1720 aaPredicted RBP18.78■□□□□ 0.6
LIG1-217ENST00000599165 DMRT2Q9Y5R5 561 aa18.78■□□□□ 0.6
LIG1-217ENST00000599165 ANKRD50Q9ULJ7 1429 aa18.77■□□□□ 0.6
LIG1-217ENST00000599165 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.77■□□□□ 0.6
LIG1-217ENST00000599165 UGGT1Q9NYU2 1555 aa18.75■□□□□ 0.59
LIG1-217ENST00000599165 UBR1Q8IWV7 1749 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 UNC13BO14795 1591 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 ROCK1Q13464 1354 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 CERKQ8TCT0 537 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 FBXO41Q8TF61 875 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.74■□□□□ 0.592e-7■■■■■ 31
LIG1-217ENST00000599165 EFCAB6Q5THR3 1501 aa18.74■□□□□ 0.59
LIG1-217ENST00000599165 RRBP1Q9P2E9 1410 aaKnown RBP18.74■□□□□ 0.59
LIG1-217ENST00000599165 PKD2Q13563 968 aa18.72■□□□□ 0.59
LIG1-217ENST00000599165 SYNMO15061 1565 aa18.72■□□□□ 0.59
LIG1-217ENST00000599165 PIK3C2BO00750 1634 aa18.7■□□□□ 0.58
LIG1-217ENST00000599165 KANK1Q14678 1352 aa18.69■□□□□ 0.58
LIG1-217ENST00000599165 TET3O43151 1660 aa18.69■□□□□ 0.58
LIG1-217ENST00000599165 NOS1P29475 1434 aa18.68■□□□□ 0.58
LIG1-217ENST00000599165 MED14O60244 1454 aa18.67■□□□□ 0.58
LIG1-217ENST00000599165 ZNF335Q9H4Z2 1342 aaPredicted RBP18.67■□□□□ 0.58
LIG1-217ENST00000599165 GCC2Q8IWJ2 1684 aa18.66■□□□□ 0.58
LIG1-217ENST00000599165 ARHGAP23Q9P227 1491 aa18.65■□□□□ 0.58
LIG1-217ENST00000599165 IQGAP3Q86VI3 1631 aa18.65■□□□□ 0.58
LIG1-217ENST00000599165 ITGAEP38570 1179 aa18.65■□□□□ 0.58
LIG1-217ENST00000599165 THEMISQ8N1K5 641 aaPredicted RBP18.65■□□□□ 0.58
LIG1-217ENST00000599165 E9PCH4 1651 aa18.64■□□□□ 0.57
LIG1-217ENST00000599165 SLIT1O75093 1534 aa18.64■□□□□ 0.57
LIG1-217ENST00000599165 KDM5AP29375 1690 aaKnown RBP18.63■□□□□ 0.57
LIG1-217ENST00000599165 IQGAP1P46940 1657 aa18.63■□□□□ 0.57
LIG1-217ENST00000599165 RPRD2Q5VT52 1461 aaKnown RBP18.63■□□□□ 0.57
LIG1-217ENST00000599165 NPHP4O75161 1426 aaPredicted RBP18.62■□□□□ 0.57
LIG1-217ENST00000599165 ANKLE2Q86XL3 938 aa18.61■□□□□ 0.57
LIG1-217ENST00000599165 IQSEC2Q5JU85 1478 aa18.6■□□□□ 0.57
LIG1-217ENST00000599165 IDI1Q13907 227 aa18.6■□□□□ 0.57
LIG1-217ENST00000599165 STRCP1A6NGW2 1772 aa18.6■□□□□ 0.57
LIG1-217ENST00000599165 MYO5BQ9ULV0 1848 aa18.59■□□□□ 0.57
LIG1-217ENST00000599165 LTKP29376 864 aa18.58■□□□□ 0.56
LIG1-217ENST00000599165 ADGRB3O60242 1522 aa18.58■□□□□ 0.56
LIG1-217ENST00000599165 SCAF11Q99590 1463 aaKnown RBP18.58■□□□□ 0.56
LIG1-217ENST00000599165 NAIPQ13075 1403 aa18.57■□□□□ 0.56
LIG1-217ENST00000599165 TMEM2Q9UHN6 1383 aa18.55■□□□□ 0.56
LIG1-217ENST00000599165 TMEM131LA2VDJ0 1609 aa18.54■□□□□ 0.56
LIG1-217ENST00000599165 NUP155O75694 1391 aa18.54■□□□□ 0.56
LIG1-217ENST00000599165 CPS1P31327 1500 aa18.52■□□□□ 0.56
LIG1-217ENST00000599165 HFM1A2PYH4 1435 aa18.5■□□□□ 0.55
LIG1-217ENST00000599165 TXNDC2Q86VQ3 553 aa18.5■□□□□ 0.55
LIG1-217ENST00000599165 SLC52A1Q9NWF4 448 aa18.5■□□□□ 0.55
LIG1-217ENST00000599165 ZFYVE9O95405 1425 aa18.49■□□□□ 0.55
LIG1-217ENST00000599165 SPHKAPQ2M3C7 1700 aa18.49■□□□□ 0.55
LIG1-217ENST00000599165 ALKQ9UM73 1620 aa18.48■□□□□ 0.55
LIG1-217ENST00000599165 XIRP1Q702N8 1843 aaKnown RBP18.46■□□□□ 0.55
LIG1-217ENST00000599165 STAG3Q9UJ98 1225 aa18.45■□□□□ 0.54
LIG1-217ENST00000599165 LRRC7Q96NW7 1537 aa18.44■□□□□ 0.54
LIG1-217ENST00000599165 EID1Q9Y6B2 187 aa18.43■□□□□ 0.54
LIG1-217ENST00000599165 CLTCL1P53675 1640 aa18.41■□□□□ 0.54
LIG1-217ENST00000599165 RIMS2Q9UQ26 1411 aa18.41■□□□□ 0.54
LIG1-217ENST00000599165 TRPM2O94759 1503 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms