RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NPATQ14207 1427 aa24.98■■□□□ 1.59
TRIM28-213ENST00000598355 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.98■■□□□ 1.59
TRIM28-213ENST00000598355 PRDM15P57071 1507 aaPredicted RBP24.97■■□□□ 1.59
TRIM28-213ENST00000598355 NCOA1Q15788 1441 aa24.96■■□□□ 1.59
TRIM28-213ENST00000598355 CEBPAP49715 358 aaPredicted RBP24.96■■□□□ 1.59
TRIM28-213ENST00000598355 ZMYM3Q14202 1370 aa24.95■■□□□ 1.59
TRIM28-213ENST00000598355 KIF3BO15066 747 aa24.95■■□□□ 1.58
TRIM28-213ENST00000598355 GGT6Q6P531 493 aa24.95■■□□□ 1.58
TRIM28-213ENST00000598355 ESF1Q9H501 851 aaKnown RBP24.94■■□□□ 1.58
TRIM28-213ENST00000598355 ANKRD30AQ9BXX3 1397 aa24.93■■□□□ 1.58
TRIM28-213ENST00000598355 ZNF142P52746 1687 aaPredicted RBP24.93■■□□□ 1.58
TRIM28-213ENST00000598355 RRBP1Q9P2E9 1410 aaKnown RBP24.93■■□□□ 1.58
TRIM28-213ENST00000598355 CEP152O94986 1710 aa24.92■■□□□ 1.58
TRIM28-213ENST00000598355 ABCC3O15438 1527 aa24.92■■□□□ 1.58
TRIM28-213ENST00000598355 PTPRKQ15262 1439 aa24.92■■□□□ 1.58
TRIM28-213ENST00000598355 MYO3AQ8NEV4 1616 aa24.91■■□□□ 1.58
TRIM28-213ENST00000598355 UHRF1BP1Q6BDS2 1440 aa24.9■■□□□ 1.58
TRIM28-213ENST00000598355 FAM50AQ14320 339 aaKnown RBP24.9■■□□□ 1.58
TRIM28-213ENST00000598355 PZPP20742 1482 aa24.89■■□□□ 1.58
TRIM28-213ENST00000598355 CAMSAP1Q5T5Y3 1602 aa24.88■■□□□ 1.57
TRIM28-213ENST00000598355 PLPPR3Q6T4P5 718 aa24.88■■□□□ 1.57
TRIM28-213ENST00000598355 VWDEQ8N2E2 1590 aa24.88■■□□□ 1.57
TRIM28-213ENST00000598355 PPARGC1BQ86YN6 1023 aaKnown RBP24.86■■□□□ 1.57
TRIM28-213ENST00000598355 ROCK1Q13464 1354 aa24.85■■□□□ 1.57
TRIM28-213ENST00000598355 RRP7BPQ9NSQ0 103 aa24.85■■□□□ 1.57
TRIM28-213ENST00000598355 CHIC2Q9UKJ5 165 aa24.83■■□□□ 1.57
TRIM28-213ENST00000598355 STRCQ7RTU9 1775 aa24.82■■□□□ 1.56
TRIM28-213ENST00000598355 CEP170BQ9Y4F5 1589 aaPredicted RBP24.81■■□□□ 1.56
TRIM28-213ENST00000598355 LMTK2Q8IWU2 1503 aa24.81■■□□□ 1.56
TRIM28-213ENST00000598355 SPATA31D1Q6ZQQ2 1576 aa24.8■■□□□ 1.56
TRIM28-213ENST00000598355 WASHC2CQ9Y4E1 1318 aa24.8■■□□□ 1.56
TRIM28-213ENST00000598355 UNC13BO14795 1591 aa24.8■■□□□ 1.56
TRIM28-213ENST00000598355 ANKRD50Q9ULJ7 1429 aa24.79■■□□□ 1.56
TRIM28-213ENST00000598355 HSPA2P54652 639 aa24.78■■□□□ 1.56
TRIM28-213ENST00000598355 ARHGAP31Q2M1Z3 1444 aa24.78■■□□□ 1.56
TRIM28-213ENST00000598355 ERVK-7P63135 1459 aa24.74■■□□□ 1.55
TRIM28-213ENST00000598355 GCC2Q8IWJ2 1684 aa24.73■■□□□ 1.55
TRIM28-213ENST00000598355 EFCAB6Q5THR3 1501 aa24.73■■□□□ 1.55
TRIM28-213ENST00000598355 A2ML1A8K2U0 1454 aa24.73■■□□□ 1.55
TRIM28-213ENST00000598355 TNRQ92752 1358 aa24.72■■□□□ 1.55
TRIM28-213ENST00000598355 CFAP65Q6ZU64 1925 aaKnown RBP24.71■■□□□ 1.55
TRIM28-213ENST00000598355 NLRP1Q9C000 1473 aa24.7■■□□□ 1.55
TRIM28-213ENST00000598355 PLA2R1Q13018 1463 aa24.7■■□□□ 1.54
TRIM28-213ENST00000598355 TET3O43151 1660 aa24.69■■□□□ 1.54
TRIM28-213ENST00000598355 FBXO31Q5XUX0 539 aaPredicted RBP24.69■■□□□ 1.54
TRIM28-213ENST00000598355 KANK1Q14678 1352 aa24.68■■□□□ 1.54
TRIM28-213ENST00000598355 IQGAP3Q86VI3 1631 aa24.68■■□□□ 1.54
TRIM28-213ENST00000598355 POLR1AO95602 1720 aaPredicted RBP24.64■■□□□ 1.53
TRIM28-213ENST00000598355 RPRD2Q5VT52 1461 aaKnown RBP24.63■■□□□ 1.53
TRIM28-213ENST00000598355 UBR1Q8IWV7 1749 aa24.61■■□□□ 1.53
TRIM28-213ENST00000598355 SYNMO15061 1565 aa24.61■■□□□ 1.53
TRIM28-213ENST00000598355 KDM5AP29375 1690 aaKnown RBP24.61■■□□□ 1.53
TRIM28-213ENST00000598355 NAIPQ13075 1403 aa24.61■■□□□ 1.53
TRIM28-213ENST00000598355 UGGT1Q9NYU2 1555 aa24.6■■□□□ 1.53
TRIM28-213ENST00000598355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.6■■□□□ 1.53
TRIM28-213ENST00000598355 PTPRTO14522 1441 aa24.6■■□□□ 1.53
TRIM28-213ENST00000598355 ITGAEP38570 1179 aa24.59■■□□□ 1.53
TRIM28-213ENST00000598355 HFM1A2PYH4 1435 aa24.59■■□□□ 1.53
TRIM28-213ENST00000598355 NOS1P29475 1434 aa24.59■■□□□ 1.53
TRIM28-213ENST00000598355 E9PCH4 1651 aa24.59■■□□□ 1.53
TRIM28-213ENST00000598355 NEURL4Q96JN8 1562 aa24.56■■□□□ 1.52
TRIM28-213ENST00000598355 PIK3C2BO00750 1634 aa24.55■■□□□ 1.52
TRIM28-213ENST00000598355 DMRT2Q9Y5R5 561 aa24.51■■□□□ 1.51
TRIM28-213ENST00000598355 SLIT1O75093 1534 aa24.49■■□□□ 1.51
TRIM28-213ENST00000598355 PKD2Q13563 968 aa24.48■■□□□ 1.51
TRIM28-213ENST00000598355 ARHGAP23Q9P227 1491 aa24.48■■□□□ 1.51
TRIM28-213ENST00000598355 MED14O60244 1454 aa24.47■■□□□ 1.51
TRIM28-213ENST00000598355 ADGRB3O60242 1522 aa24.46■■□□□ 1.51
TRIM28-213ENST00000598355 NUP155O75694 1391 aa24.46■■□□□ 1.51
TRIM28-213ENST00000598355 SPHKAPQ2M3C7 1700 aa24.45■■□□□ 1.5
TRIM28-213ENST00000598355 THEMISQ8N1K5 641 aaPredicted RBP24.44■■□□□ 1.5
TRIM28-213ENST00000598355 MYO5BQ9ULV0 1848 aa24.44■■□□□ 1.5
TRIM28-213ENST00000598355 LTBP4Q8N2S1 1624 aa24.43■■□□□ 1.5
TRIM28-213ENST00000598355 NCKAP5LQ9HCH0 1330 aa24.43■■□□□ 1.5
TRIM28-213ENST00000598355 IQGAP1P46940 1657 aa24.43■■□□□ 1.5
TRIM28-213ENST00000598355 TMEM131LA2VDJ0 1609 aa24.4■■□□□ 1.5
TRIM28-213ENST00000598355 SCAF11Q99590 1463 aaKnown RBP24.38■■□□□ 1.49
TRIM28-213ENST00000598355 IDI1Q13907 227 aa24.37■■□□□ 1.49
TRIM28-213ENST00000598355 SLC52A1Q9NWF4 448 aa24.37■■□□□ 1.49
TRIM28-213ENST00000598355 ANKLE2Q86XL3 938 aa24.35■■□□□ 1.49
TRIM28-213ENST00000598355 NPHP4O75161 1426 aaPredicted RBP24.35■■□□□ 1.49
TRIM28-213ENST00000598355 TMEM2Q9UHN6 1383 aa24.34■■□□□ 1.49
TRIM28-213ENST00000598355 TRPM2O94759 1503 aa24.33■■□□□ 1.49
TRIM28-213ENST00000598355 IQSEC2Q5JU85 1478 aa24.3■■□□□ 1.48
TRIM28-213ENST00000598355 ZFYVE9O95405 1425 aa24.29■■□□□ 1.48
TRIM28-213ENST00000598355 CLTCL1P53675 1640 aa24.29■■□□□ 1.48
TRIM28-213ENST00000598355 STRCP1A6NGW2 1772 aa24.26■■□□□ 1.47
TRIM28-213ENST00000598355 LTKP29376 864 aa24.26■■□□□ 1.47
TRIM28-213ENST00000598355 CERKQ8TCT0 537 aa24.26■■□□□ 1.47
TRIM28-213ENST00000598355 ZNF335Q9H4Z2 1342 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-213ENST00000598355 SETD5Q9C0A6 1442 aa24.25■■□□□ 1.47
TRIM28-213ENST00000598355 KIF1BO60333 1816 aa24.24■■□□□ 1.47
TRIM28-213ENST00000598355 CPS1P31327 1500 aa24.23■■□□□ 1.47
TRIM28-213ENST00000598355 STAG3Q9UJ98 1225 aa24.22■■□□□ 1.47
TRIM28-213ENST00000598355 ACIN1Q9UKV3 1341 aaKnown RBP24.2■■□□□ 1.46
TRIM28-213ENST00000598355 TXNDC2Q86VQ3 553 aa24.2■■□□□ 1.46
TRIM28-213ENST00000598355 RIMS2Q9UQ26 1411 aa24.19■■□□□ 1.46
TRIM28-213ENST00000598355 FBXO41Q8TF61 875 aa24.19■■□□□ 1.46
TRIM28-213ENST00000598355 EID1Q9Y6B2 187 aa24.19■■□□□ 1.46
TRIM28-213ENST00000598355 TRIM52Q96A61 297 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms