RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 DNMT1P26358 1616 aaKnown RBP19.94■□□□□ 0.78
TRIM28-212ENST00000597995 TSPY4P0CV99 314 aa19.94■□□□□ 0.78
TRIM28-212ENST00000597995 TSPY10P0CW01 314 aa19.94■□□□□ 0.78
TRIM28-212ENST00000597995 ILDR2Q71H61 639 aa19.94■□□□□ 0.78
TRIM28-212ENST00000597995 TNRQ92752 1358 aa19.94■□□□□ 0.78
TRIM28-212ENST00000597995 PZPP20742 1482 aa19.93■□□□□ 0.78
TRIM28-212ENST00000597995 LOC105371045A0A1W2PR82 267 aa19.93■□□□□ 0.78
TRIM28-212ENST00000597995 FBXO31Q5XUX0 539 aaPredicted RBP19.93■□□□□ 0.78
TRIM28-212ENST00000597995 WASHC2CQ9Y4E1 1318 aa19.93■□□□□ 0.78
TRIM28-212ENST00000597995 KDM5DQ9BY66 1539 aa19.92■□□□□ 0.78
TRIM28-212ENST00000597995 ARHGEF5Q12774 1597 aa19.91■□□□□ 0.78
TRIM28-212ENST00000597995 UBAP1LF5GYI3 381 aa19.91■□□□□ 0.78
TRIM28-212ENST00000597995 SPATA31D1Q6ZQQ2 1576 aa19.88■□□□□ 0.77
TRIM28-212ENST00000597995 SOCS7O14512 581 aa19.88■□□□□ 0.77
TRIM28-212ENST00000597995 MIA2Q96PC5 1412 aa19.87■□□□□ 0.77
TRIM28-212ENST00000597995 THEMISQ8N1K5 641 aaPredicted RBP19.87■□□□□ 0.77
TRIM28-212ENST00000597995 LRRC9Q6ZRR7 1453 aa19.86■□□□□ 0.77
TRIM28-212ENST00000597995 VPS8Q8N3P4 1428 aa19.86■□□□□ 0.77
TRIM28-212ENST00000597995 ANKLE2Q86XL3 938 aa19.86■□□□□ 0.77
TRIM28-212ENST00000597995 NLRP1Q9C000 1473 aa19.86■□□□□ 0.77
TRIM28-212ENST00000597995 POLR1AO95602 1720 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-212ENST00000597995 NEURL4Q96JN8 1562 aa19.83■□□□□ 0.77
TRIM28-212ENST00000597995 MAST1Q9Y2H9 1570 aa19.83■□□□□ 0.76
TRIM28-212ENST00000597995 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.83■□□□□ 0.76
TRIM28-212ENST00000597995 CPS1P31327 1500 aa19.82■□□□□ 0.76
TRIM28-212ENST00000597995 MAP3K1Q13233 1512 aa19.82■□□□□ 0.76
TRIM28-212ENST00000597995 SHANK2Q9UPX8 1470 aa19.81■□□□□ 0.76
TRIM28-212ENST00000597995 UGGT1Q9NYU2 1555 aa19.81■□□□□ 0.76
TRIM28-212ENST00000597995 RNF17Q9BXT8 1623 aaKnown RBP19.8■□□□□ 0.76
TRIM28-212ENST00000597995 MED14O60244 1454 aa19.79■□□□□ 0.76
TRIM28-212ENST00000597995 TOM1O60784 492 aa19.79■□□□□ 0.76
TRIM28-212ENST00000597995 KANK4Q5T7N3 995 aaPredicted RBP19.78■□□□□ 0.76
TRIM28-212ENST00000597995 NPHP4O75161 1426 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-212ENST00000597995 ABCC3O15438 1527 aa19.77■□□□□ 0.76
TRIM28-212ENST00000597995 DEPDC5O75140 1603 aa19.77■□□□□ 0.76
TRIM28-212ENST00000597995 EIF2AK4Q9P2K8 1649 aaKnown RBP19.77■□□□□ 0.76
TRIM28-212ENST00000597995 ZC3H13Q5T200 1668 aaKnown RBP19.77■□□□□ 0.76
TRIM28-212ENST00000597995 MYOM3Q5VTT5 1437 aa19.76■□□□□ 0.75
TRIM28-212ENST00000597995 VWDEQ8N2E2 1590 aa19.74■□□□□ 0.75
TRIM28-212ENST00000597995 ERVK-7P63135 1459 aa19.73■□□□□ 0.75
TRIM28-212ENST00000597995 DUOX2Q9NRD8 1548 aa19.72■□□□□ 0.75
TRIM28-212ENST00000597995 PIP4K2BP78356 416 aa19.72■□□□□ 0.75
TRIM28-212ENST00000597995 HSPA1LP34931 641 aa19.71■□□□□ 0.75
TRIM28-212ENST00000597995 MROH1Q8NDA8 1641 aa19.71■□□□□ 0.75
TRIM28-212ENST00000597995 SCAF1Q9H7N4 1312 aaKnown RBP19.71■□□□□ 0.75
TRIM28-212ENST00000597995 IQGAP1P46940 1657 aa19.69■□□□□ 0.74
TRIM28-212ENST00000597995 ARHGAP31Q2M1Z3 1444 aa19.68■□□□□ 0.74
TRIM28-212ENST00000597995 KIF15Q9NS87 1388 aa19.66■□□□□ 0.74
TRIM28-212ENST00000597995 CEP152O94986 1710 aa19.65■□□□□ 0.74
TRIM28-212ENST00000597995 ABCC5O15440 1437 aa19.65■□□□□ 0.74
TRIM28-212ENST00000597995 ERBINQ96RT1 1412 aa19.65■□□□□ 0.74
TRIM28-212ENST00000597995 CFAP65Q6ZU64 1925 aaKnown RBP19.64■□□□□ 0.74
TRIM28-212ENST00000597995 APLP2Q06481 763 aa19.64■□□□□ 0.73
TRIM28-212ENST00000597995 RRP7BPQ9NSQ0 103 aa19.64■□□□□ 0.73
TRIM28-212ENST00000597995 UBR1Q8IWV7 1749 aa19.63■□□□□ 0.73
TRIM28-212ENST00000597995 PRDM15P57071 1507 aaPredicted RBP19.63■□□□□ 0.73
TRIM28-212ENST00000597995 LRRC7Q96NW7 1537 aa19.62■□□□□ 0.73
TRIM28-212ENST00000597995 SCAF11Q99590 1463 aaKnown RBP19.62■□□□□ 0.73
TRIM28-212ENST00000597995 ALKQ9UM73 1620 aa19.62■□□□□ 0.73
TRIM28-212ENST00000597995 ARHGAP23Q9P227 1491 aa19.61■□□□□ 0.73
TRIM28-212ENST00000597995 TXNDC2Q86VQ3 553 aa19.61■□□□□ 0.73
TRIM28-212ENST00000597995 PTPN23Q9H3S7 1636 aa19.61■□□□□ 0.73
TRIM28-212ENST00000597995 SLIT1O75093 1534 aa19.61■□□□□ 0.73
TRIM28-212ENST00000597995 STRCP1A6NGW2 1772 aa19.6■□□□□ 0.73
TRIM28-212ENST00000597995 CROCC2H7BZ55 1655 aa19.6■□□□□ 0.73
TRIM28-212ENST00000597995 LTKP29376 864 aa19.6■□□□□ 0.73
TRIM28-212ENST00000597995 MED1Q15648 1581 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-212ENST00000597995 DAPK1P53355 1430 aa19.59■□□□□ 0.73
TRIM28-212ENST00000597995 SYNMO15061 1565 aa19.59■□□□□ 0.73
TRIM28-212ENST00000597995 EID1Q9Y6B2 187 aa19.59■□□□□ 0.73
TRIM28-212ENST00000597995 KANK1Q14678 1352 aa19.58■□□□□ 0.73
TRIM28-212ENST00000597995 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.58■□□□□ 0.722e-10■■■□□ 15.8
TRIM28-212ENST00000597995 FGD6Q6ZV73 1430 aa19.57■□□□□ 0.72
TRIM28-212ENST00000597995 ANKRD30AQ9BXX3 1397 aa19.56■□□□□ 0.72
TRIM28-212ENST00000597995 LMTK2Q8IWU2 1503 aa19.54■□□□□ 0.72
TRIM28-212ENST00000597995 TMEM2Q9UHN6 1383 aa19.54■□□□□ 0.72
TRIM28-212ENST00000597995 STAG3Q9UJ98 1225 aa19.53■□□□□ 0.72
TRIM28-212ENST00000597995 PIK3C2BO00750 1634 aa19.51■□□□□ 0.71
TRIM28-212ENST00000597995 IDI1Q13907 227 aa19.51■□□□□ 0.71
TRIM28-212ENST00000597995 CHIC2Q9UKJ5 165 aa19.51■□□□□ 0.71
TRIM28-212ENST00000597995 KDM5AP29375 1690 aaKnown RBP19.51■□□□□ 0.71
TRIM28-212ENST00000597995 PHF23Q9BUL5 403 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-212ENST00000597995 EFCAB6Q5THR3 1501 aa19.49■□□□□ 0.71
TRIM28-212ENST00000597995 NOS1P29475 1434 aa19.48■□□□□ 0.71
TRIM28-212ENST00000597995 SLC52A1Q9NWF4 448 aa19.47■□□□□ 0.71
TRIM28-212ENST00000597995 KCNA6P17658 529 aa19.46■□□□□ 0.71
TRIM28-212ENST00000597995 ADGRL2O95490 1459 aa19.46■□□□□ 0.71
TRIM28-212ENST00000597995 XIRP1Q702N8 1843 aaKnown RBP19.44■□□□□ 0.7
TRIM28-212ENST00000597995 SENP3Q9H4L4 574 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-212ENST00000597995 TET3O43151 1660 aa19.43■□□□□ 0.7
TRIM28-212ENST00000597995 FAM135BQ49AJ0 1406 aa19.42■□□□□ 0.7
TRIM28-212ENST00000597995 TMEM94Q12767 1356 aa19.42■□□□□ 0.7
TRIM28-212ENST00000597995 RPRD2Q5VT52 1461 aaKnown RBP19.41■□□□□ 0.7
TRIM28-212ENST00000597995 SLC26A8Q96RN1 970 aa19.41■□□□□ 0.7
TRIM28-212ENST00000597995 FAM50AQ14320 339 aaKnown RBP19.4■□□□□ 0.7
TRIM28-212ENST00000597995 ANKRD50Q9ULJ7 1429 aa19.4■□□□□ 0.7
TRIM28-212ENST00000597995 ADGRB3O60242 1522 aa19.4■□□□□ 0.7
TRIM28-212ENST00000597995 PROSER2Q86WR7 435 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-212ENST00000597995 HDGFP51858 240 aaKnown RBP19.37■□□□□ 0.69
TRIM28-212ENST00000597995 NKTRP30414 1462 aaKnown RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms