RNA–Protein interactions for RNA: ENST00000580127.5

MKS1-209, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-209ENST00000580127 CAMSAP2Q08AD1 1489 aa28.34■■■□□ 2.13
MKS1-209ENST00000580127 UBAP1LF5GYI3 381 aa28.32■■■□□ 2.12
MKS1-209ENST00000580127 TCOF1Q13428 1488 aaKnown RBP28.32■■■□□ 2.12
MKS1-209ENST00000580127 TNRQ92752 1358 aa28.31■■■□□ 2.12
MKS1-209ENST00000580127 FAM135AQ9P2D6 1515 aa28.31■■■□□ 2.12
MKS1-209ENST00000580127 FBXO31Q5XUX0 539 aaPredicted RBP28.3■■■□□ 2.12
MKS1-209ENST00000580127 THEMISQ8N1K5 641 aaPredicted RBP28.3■■■□□ 2.12
MKS1-209ENST00000580127 ANKLE2Q86XL3 938 aa28.27■■■□□ 2.12
MKS1-209ENST00000580127 KDM5DQ9BY66 1539 aa28.26■■■□□ 2.11
MKS1-209ENST00000580127 ARHGEF5Q12774 1597 aa28.25■■■□□ 2.11
MKS1-209ENST00000580127 PZPP20742 1482 aa28.25■■■□□ 2.11
MKS1-209ENST00000580127 DNMT1P26358 1616 aaKnown RBP28.25■■■□□ 2.11
MKS1-209ENST00000580127 VPS8Q8N3P4 1428 aa28.23■■■□□ 2.11
MKS1-209ENST00000580127 LRRC9Q6ZRR7 1453 aa28.21■■■□□ 2.11
MKS1-209ENST00000580127 MIA2Q96PC5 1412 aa28.21■■■□□ 2.11
MKS1-209ENST00000580127 LOC105371045A0A1W2PR82 267 aa28.21■■■□□ 2.11
MKS1-209ENST00000580127 APLP2Q06481 763 aa28.18■■■□□ 2.1
MKS1-209ENST00000580127 NLRP1Q9C000 1473 aa28.18■■■□□ 2.1
MKS1-209ENST00000580127 SOCS7O14512 581 aa28.16■■■□□ 2.1
MKS1-209ENST00000580127 TOM1O60784 492 aa28.16■■■□□ 2.1
MKS1-209ENST00000580127 MAP3K1Q13233 1512 aa28.15■■■□□ 2.1
MKS1-209ENST00000580127 ILDR2Q71H61 639 aa28.15■■■□□ 2.1
MKS1-209ENST00000580127 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.14■■■□□ 2.1
MKS1-209ENST00000580127 POLR1AO95602 1720 aaPredicted RBP28.13■■■□□ 2.09
MKS1-209ENST00000580127 SPATA31D1Q6ZQQ2 1576 aa28.12■■■□□ 2.09
MKS1-209ENST00000580127 KANK4Q5T7N3 995 aaPredicted RBP28.11■■■□□ 2.09
MKS1-209ENST00000580127 CPS1P31327 1500 aa28.11■■■□□ 2.09
MKS1-209ENST00000580127 SCAF1Q9H7N4 1312 aaKnown RBP28.11■■■□□ 2.09
MKS1-209ENST00000580127 UGGT1Q9NYU2 1555 aa28.11■■■□□ 2.09
MKS1-209ENST00000580127 MYOM3Q5VTT5 1437 aa28.1■■■□□ 2.09
MKS1-209ENST00000580127 MAST1Q9Y2H9 1570 aa28.1■■■□□ 2.09
MKS1-209ENST00000580127 SHANK2Q9UPX8 1470 aa28.09■■■□□ 2.09
MKS1-209ENST00000580127 NPHP4O75161 1426 aaPredicted RBP28.05■■■□□ 2.08
MKS1-209ENST00000580127 PIP4K2BP78356 416 aa28.05■■■□□ 2.08
MKS1-209ENST00000580127 ZC3H13Q5T200 1668 aaKnown RBP28.05■■■□□ 2.08
MKS1-209ENST00000580127 RNF17Q9BXT8 1623 aaKnown RBP28.05■■■□□ 2.08
MKS1-209ENST00000580127 EIF2AK4Q9P2K8 1649 aaKnown RBP28.04■■■□□ 2.08
MKS1-209ENST00000580127 NEURL4Q96JN8 1562 aa28.03■■■□□ 2.08
MKS1-209ENST00000580127 MED14O60244 1454 aa28.02■■■□□ 2.08
MKS1-209ENST00000580127 DEPDC5O75140 1603 aa28.02■■■□□ 2.08
MKS1-209ENST00000580127 ABCC3O15438 1527 aa28.02■■■□□ 2.08
MKS1-209ENST00000580127 DUOX2Q9NRD8 1548 aa28.02■■■□□ 2.08
MKS1-209ENST00000580127 CFAP65Q6ZU64 1925 aaKnown RBP27.98■■■□□ 2.07
MKS1-209ENST00000580127 RRP7BPQ9NSQ0 103 aa27.97■■■□□ 2.07
MKS1-209ENST00000580127 HSPA1LP34931 641 aa27.96■■■□□ 2.07
MKS1-209ENST00000580127 ERVK-7P63135 1459 aa27.95■■■□□ 2.07
MKS1-209ENST00000580127 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.94■■■□□ 2.061e-8■■■■■ 27.4
MKS1-209ENST00000580127 EID1Q9Y6B2 187 aa27.94■■■□□ 2.06
MKS1-209ENST00000580127 KANK1Q14678 1352 aa27.94■■■□□ 2.06
MKS1-209ENST00000580127 KIF15Q9NS87 1388 aa27.94■■■□□ 2.06
MKS1-209ENST00000580127 IQGAP1P46940 1657 aa27.93■■■□□ 2.06
MKS1-209ENST00000580127 VWDEQ8N2E2 1590 aa27.91■■■□□ 2.06
MKS1-209ENST00000580127 TXNDC2Q86VQ3 553 aa27.91■■■□□ 2.06
MKS1-209ENST00000580127 STAG3Q9UJ98 1225 aa27.91■■■□□ 2.06
MKS1-209ENST00000580127 ERBINQ96RT1 1412 aa27.9■■■□□ 2.06
MKS1-209ENST00000580127 ARHGAP31Q2M1Z3 1444 aa27.89■■■□□ 2.06
MKS1-209ENST00000580127 CEP152O94986 1710 aa27.89■■■□□ 2.05
MKS1-209ENST00000580127 ABCC5O15440 1437 aa27.88■■■□□ 2.05
MKS1-209ENST00000580127 MROH1Q8NDA8 1641 aa27.87■■■□□ 2.05
MKS1-209ENST00000580127 PTPN23Q9H3S7 1636 aa27.86■■■□□ 2.05
MKS1-209ENST00000580127 ANKRD30AQ9BXX3 1397 aa27.86■■■□□ 2.05
MKS1-209ENST00000580127 SCAF11Q99590 1463 aaKnown RBP27.83■■■□□ 2.05
MKS1-209ENST00000580127 UBR1Q8IWV7 1749 aa27.83■■■□□ 2.05
MKS1-209ENST00000580127 DAPK1P53355 1430 aa27.83■■■□□ 2.05
MKS1-209ENST00000580127 CHIC2Q9UKJ5 165 aa27.82■■■□□ 2.04
MKS1-209ENST00000580127 PRDM15P57071 1507 aaPredicted RBP27.81■■■□□ 2.04
MKS1-209ENST00000580127 CROCC2H7BZ55 1655 aa27.81■■■□□ 2.04
MKS1-209ENST00000580127 LTKP29376 864 aa27.8■■■□□ 2.04
MKS1-209ENST00000580127 FGD6Q6ZV73 1430 aa27.8■■■□□ 2.04
MKS1-209ENST00000580127 LRRC7Q96NW7 1537 aa27.78■■■□□ 2.04
MKS1-209ENST00000580127 PHF23Q9BUL5 403 aaPredicted RBP27.77■■■□□ 2.04
MKS1-209ENST00000580127 SLIT1O75093 1534 aa27.77■■■□□ 2.04
MKS1-209ENST00000580127 ARHGAP23Q9P227 1491 aa27.76■■■□□ 2.03
MKS1-209ENST00000580127 SYNMO15061 1565 aa27.75■■■□□ 2.03
MKS1-209ENST00000580127 TMEM2Q9UHN6 1383 aa27.73■■■□□ 2.03
MKS1-209ENST00000580127 IDI1Q13907 227 aa27.73■■■□□ 2.03
MKS1-209ENST00000580127 STRCP1A6NGW2 1772 aa27.72■■■□□ 2.03
MKS1-209ENST00000580127 FAM50AQ14320 339 aaKnown RBP27.71■■■□□ 2.03
MKS1-209ENST00000580127 MED1Q15648 1581 aaPredicted RBP27.71■■■□□ 2.03
MKS1-209ENST00000580127 SLC52A1Q9NWF4 448 aa27.71■■■□□ 2.03
MKS1-209ENST00000580127 SENP3Q9H4L4 574 aaPredicted RBP27.69■■■□□ 2.02
MKS1-209ENST00000580127 HDGFP51858 240 aaKnown RBP27.68■■■□□ 2.02
MKS1-209ENST00000580127 LMTK2Q8IWU2 1503 aa27.67■■■□□ 2.02
MKS1-209ENST00000580127 PIK3C2BO00750 1634 aa27.67■■■□□ 2.02
MKS1-209ENST00000580127 BCANQ96GW7 911 aa27.67■■■□□ 2.02
MKS1-209ENST00000580127 EFCAB6Q5THR3 1501 aa27.67■■■□□ 2.02
MKS1-209ENST00000580127 KDM5AP29375 1690 aaKnown RBP27.66■■■□□ 2.02
MKS1-209ENST00000580127 KCNA6P17658 529 aa27.65■■■□□ 2.02
MKS1-209ENST00000580127 ALKQ9UM73 1620 aa27.64■■■□□ 2.02
MKS1-209ENST00000580127 PROSER2Q86WR7 435 aaPredicted RBP27.63■■■□□ 2.01
MKS1-209ENST00000580127 SLC26A8Q96RN1 970 aa27.61■■■□□ 2.01
MKS1-209ENST00000580127 ADGRL2O95490 1459 aa27.59■■■□□ 2.01
MKS1-209ENST00000580127 NOS1P29475 1434 aa27.58■■■□□ 2.01
MKS1-209ENST00000580127 ANKRD50Q9ULJ7 1429 aa27.58■■■□□ 2.01
MKS1-209ENST00000580127 RPRD2Q5VT52 1461 aaKnown RBP27.56■■■□□ 2
MKS1-209ENST00000580127 TMEM94Q12767 1356 aa27.55■■■□□ 2
MKS1-209ENST00000580127 FAM135BQ49AJ0 1406 aa27.55■■■□□ 2
MKS1-209ENST00000580127 PPP1R15AO75807 674 aaPredicted RBP27.54■■■□□ 2
MKS1-209ENST00000580127 XIRP1Q702N8 1843 aaKnown RBP27.51■■□□□ 1.99
MKS1-209ENST00000580127 ADGRB3O60242 1522 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms