RNA–Protein interactions for RNA: ENST00000568569.1

GTF3C1-209, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-209ENST00000568569 CPS1P31327 1500 aa19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 SCAF1Q9H7N4 1312 aaKnown RBP19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 PZPP20742 1482 aa19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 KIF3BO15066 747 aa19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 TOM1O60784 492 aa19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 FBXO31Q5XUX0 539 aaPredicted RBP19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 FAM135AQ9P2D6 1515 aa19.05■□□□□ 0.64
GTF3C1-209ENST00000568569 HSPA1LP34931 641 aa19.04■□□□□ 0.64
GTF3C1-209ENST00000568569 KDM5DQ9BY66 1539 aa19.04■□□□□ 0.64
GTF3C1-209ENST00000568569 PIP4K2BP78356 416 aa19.03■□□□□ 0.64
GTF3C1-209ENST00000568569 CCDC141Q6ZP82 1450 aa19.03■□□□□ 0.64
GTF3C1-209ENST00000568569 SHANK2Q9UPX8 1470 aa19.03■□□□□ 0.64
GTF3C1-209ENST00000568569 NEURL4Q96JN8 1562 aa19.02■□□□□ 0.64
GTF3C1-209ENST00000568569 ANKLE2Q86XL3 938 aa19.02■□□□□ 0.64
GTF3C1-209ENST00000568569 WASHC2CQ9Y4E1 1318 aa19.01■□□□□ 0.63
GTF3C1-209ENST00000568569 RSPH4AQ5TD94 716 aa19■□□□□ 0.63
GTF3C1-209ENST00000568569 THEMISQ8N1K5 641 aaPredicted RBP19■□□□□ 0.63
GTF3C1-209ENST00000568569 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19■□□□□ 0.63
GTF3C1-209ENST00000568569 NLRP1Q9C000 1473 aa18.99■□□□□ 0.63
GTF3C1-209ENST00000568569 POLR1AO95602 1720 aaPredicted RBP18.99■□□□□ 0.63
GTF3C1-209ENST00000568569 MIA2Q96PC5 1412 aa18.99■□□□□ 0.63
GTF3C1-209ENST00000568569 MED1Q15648 1581 aaPredicted RBP18.98■□□□□ 0.63
GTF3C1-209ENST00000568569 CAMSAP2Q08AD1 1489 aa18.97■□□□□ 0.63
GTF3C1-209ENST00000568569 UGGT1Q9NYU2 1555 aa18.95■□□□□ 0.62
GTF3C1-209ENST00000568569 NPHP4O75161 1426 aaPredicted RBP18.95■□□□□ 0.62
GTF3C1-209ENST00000568569 MED14O60244 1454 aa18.95■□□□□ 0.62
GTF3C1-209ENST00000568569 NCOA2Q15596 1464 aa18.95■□□□□ 0.62
GTF3C1-209ENST00000568569 VWDEQ8N2E2 1590 aa18.94■□□□□ 0.62
GTF3C1-209ENST00000568569 TSPY4P0CV99 314 aa18.92■□□□□ 0.62
GTF3C1-209ENST00000568569 TSPY10P0CW01 314 aa18.92■□□□□ 0.62
GTF3C1-209ENST00000568569 DEPDC5O75140 1603 aa18.92■□□□□ 0.62
GTF3C1-209ENST00000568569 ARHGEF5Q12774 1597 aa18.89■□□□□ 0.62
GTF3C1-209ENST00000568569 PHF23Q9BUL5 403 aaPredicted RBP18.89■□□□□ 0.61
GTF3C1-209ENST00000568569 ALKQ9UM73 1620 aa18.87■□□□□ 0.61
GTF3C1-209ENST00000568569 ABCC3O15438 1527 aa18.86■□□□□ 0.61
GTF3C1-209ENST00000568569 IQGAP1P46940 1657 aa18.85■□□□□ 0.61
GTF3C1-209ENST00000568569 RNF17Q9BXT8 1623 aaKnown RBP18.85■□□□□ 0.61
GTF3C1-209ENST00000568569 LRRC7Q96NW7 1537 aa18.84■□□□□ 0.61
GTF3C1-209ENST00000568569 ERVK-7P63135 1459 aa18.84■□□□□ 0.61
GTF3C1-209ENST00000568569 ZC3H13Q5T200 1668 aaKnown RBP18.82■□□□□ 0.6
GTF3C1-209ENST00000568569 SYNMO15061 1565 aa18.81■□□□□ 0.6
GTF3C1-209ENST00000568569 MAST1Q9Y2H9 1570 aa18.81■□□□□ 0.6
GTF3C1-209ENST00000568569 SCAF11Q99590 1463 aaKnown RBP18.79■□□□□ 0.6
GTF3C1-209ENST00000568569 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
GTF3C1-209ENST00000568569 EIF2AK4Q9P2K8 1649 aaKnown RBP18.78■□□□□ 0.6
GTF3C1-209ENST00000568569 LRRC9Q6ZRR7 1453 aa18.78■□□□□ 0.6
GTF3C1-209ENST00000568569 STRCP1A6NGW2 1772 aa18.76■□□□□ 0.59
GTF3C1-209ENST00000568569 MROH1Q8NDA8 1641 aa18.76■□□□□ 0.59
GTF3C1-209ENST00000568569 ARHGAP23Q9P227 1491 aa18.74■□□□□ 0.59
GTF3C1-209ENST00000568569 TXNDC2Q86VQ3 553 aa18.74■□□□□ 0.59
GTF3C1-209ENST00000568569 LTKP29376 864 aa18.73■□□□□ 0.59
GTF3C1-209ENST00000568569 SLIT1O75093 1534 aa18.73■□□□□ 0.59
GTF3C1-209ENST00000568569 DUOX2Q9NRD8 1548 aa18.73■□□□□ 0.59
GTF3C1-209ENST00000568569 ARHGAP31Q2M1Z3 1444 aa18.73■□□□□ 0.59
GTF3C1-209ENST00000568569 VPS8Q8N3P4 1428 aa18.73■□□□□ 0.59
GTF3C1-209ENST00000568569 UBR1Q8IWV7 1749 aa18.72■□□□□ 0.59
GTF3C1-209ENST00000568569 EID1Q9Y6B2 187 aa18.72■□□□□ 0.59
GTF3C1-209ENST00000568569 MYOM3Q5VTT5 1437 aa18.72■□□□□ 0.59
GTF3C1-209ENST00000568569 PRDM15P57071 1507 aaPredicted RBP18.69■□□□□ 0.58
GTF3C1-209ENST00000568569 KIF15Q9NS87 1388 aa18.69■□□□□ 0.58
GTF3C1-209ENST00000568569 CEP152O94986 1710 aa18.69■□□□□ 0.58
GTF3C1-209ENST00000568569 ERBINQ96RT1 1412 aa18.68■□□□□ 0.58
GTF3C1-209ENST00000568569 KANK4Q5T7N3 995 aaPredicted RBP18.68■□□□□ 0.58
GTF3C1-209ENST00000568569 TMEM2Q9UHN6 1383 aa18.68■□□□□ 0.58
GTF3C1-209ENST00000568569 RGS17Q9UGC6 210 aaPredicted RBP18.67■□□□□ 0.58
GTF3C1-209ENST00000568569 MAP3K1Q13233 1512 aa18.67■□□□□ 0.58
GTF3C1-209ENST00000568569 STAG3Q9UJ98 1225 aa18.66■□□□□ 0.58
GTF3C1-209ENST00000568569 FAM135BQ49AJ0 1406 aa18.66■□□□□ 0.58
GTF3C1-209ENST00000568569 RRP7BPQ9NSQ0 103 aa18.64■□□□□ 0.57
GTF3C1-209ENST00000568569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.63■□□□□ 0.571e-11■■□□□ 13.9
GTF3C1-209ENST00000568569 TMEM94Q12767 1356 aa18.63■□□□□ 0.57
GTF3C1-209ENST00000568569 KANK1Q14678 1352 aa18.63■□□□□ 0.57
GTF3C1-209ENST00000568569 ABCC5O15440 1437 aa18.63■□□□□ 0.57
GTF3C1-209ENST00000568569 CFAP65Q6ZU64 1925 aaKnown RBP18.61■□□□□ 0.57
GTF3C1-209ENST00000568569 PIK3C2BO00750 1634 aa18.6■□□□□ 0.57
GTF3C1-209ENST00000568569 EFCAB6Q5THR3 1501 aa18.6■□□□□ 0.57
GTF3C1-209ENST00000568569 KCNA6P17658 529 aa18.6■□□□□ 0.57
GTF3C1-209ENST00000568569 XIRP1Q702N8 1843 aaKnown RBP18.58■□□□□ 0.57
GTF3C1-209ENST00000568569 IDI1Q13907 227 aa18.58■□□□□ 0.56
GTF3C1-209ENST00000568569 LMTK2Q8IWU2 1503 aa18.57■□□□□ 0.56
GTF3C1-209ENST00000568569 DAPK1P53355 1430 aa18.57■□□□□ 0.56
GTF3C1-209ENST00000568569 PROSER2Q86WR7 435 aaPredicted RBP18.56■□□□□ 0.56
GTF3C1-209ENST00000568569 SLC26A8Q96RN1 970 aa18.56■□□□□ 0.56
GTF3C1-209ENST00000568569 CROCC2H7BZ55 1655 aa18.56■□□□□ 0.56
GTF3C1-209ENST00000568569 KDM5AP29375 1690 aaKnown RBP18.56■□□□□ 0.56
GTF3C1-209ENST00000568569 NKTRP30414 1462 aaKnown RBP18.55■□□□□ 0.56
GTF3C1-209ENST00000568569 POTEAQ6S8J7 498 aa18.55■□□□□ 0.56
GTF3C1-209ENST00000568569 ANKRD30AQ9BXX3 1397 aa18.55■□□□□ 0.56
GTF3C1-209ENST00000568569 PTPN23Q9H3S7 1636 aa18.54■□□□□ 0.56
GTF3C1-209ENST00000568569 TET3O43151 1660 aa18.54■□□□□ 0.56
GTF3C1-209ENST00000568569 LOC105371045A0A1W2PR82 267 aa18.53■□□□□ 0.56
GTF3C1-209ENST00000568569 NOS1P29475 1434 aa18.53■□□□□ 0.56
GTF3C1-209ENST00000568569 RBM33Q96EV2 1170 aaKnown RBP18.53■□□□□ 0.56
GTF3C1-209ENST00000568569 SLC52A1Q9NWF4 448 aa18.52■□□□□ 0.56
GTF3C1-209ENST00000568569 ROBO1Q9Y6N7 1651 aa18.52■□□□□ 0.56
GTF3C1-209ENST00000568569 ADGRB3O60242 1522 aa18.52■□□□□ 0.56
GTF3C1-209ENST00000568569 MSH6P52701 1360 aa18.52■□□□□ 0.55
GTF3C1-209ENST00000568569 FGD6Q6ZV73 1430 aa18.51■□□□□ 0.55
GTF3C1-209ENST00000568569 NWD1Q149M9 1564 aa18.51■□□□□ 0.55
GTF3C1-209ENST00000568569 APLP2Q06481 763 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms