RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 NCOA1Q15788 1441 aa27.6■■■□□ 2.01
NME3-205ENST00000563854 CEP170BQ9Y4F5 1589 aaPredicted RBP27.6■■■□□ 2.01
NME3-205ENST00000563854 ZNF142P52746 1687 aaPredicted RBP27.59■■■□□ 2.01
NME3-205ENST00000563854 FAM135AQ9P2D6 1515 aa27.58■■■□□ 2.01
NME3-205ENST00000563854 FGD6Q6ZV73 1430 aa27.58■■■□□ 2
NME3-205ENST00000563854 CROCC2H7BZ55 1655 aa27.57■■■□□ 2
NME3-205ENST00000563854 CERKQ8TCT0 537 aa27.57■■■□□ 2
NME3-205ENST00000563854 PTPRTO14522 1441 aa27.55■■■□□ 2
NME3-205ENST00000563854 RNF17Q9BXT8 1623 aaKnown RBP27.55■■■□□ 2
NME3-205ENST00000563854 ABCC5O15440 1437 aa27.54■■■□□ 2
NME3-205ENST00000563854 PZPP20742 1482 aa27.54■■■□□ 2
NME3-205ENST00000563854 FBXO31Q5XUX0 539 aaPredicted RBP27.54■■■□□ 2
NME3-205ENST00000563854 EIF2AK4Q9P2K8 1649 aaKnown RBP27.54■■■□□ 2
NME3-205ENST00000563854 DUOX2Q9NRD8 1548 aa27.52■■■□□ 2
NME3-205ENST00000563854 SHANK2Q9UPX8 1470 aa27.52■■■□□ 2
NME3-205ENST00000563854 TNRQ92752 1358 aa27.52■■■□□ 2
NME3-205ENST00000563854 DAPK1P53355 1430 aa27.51■■□□□ 1.99
NME3-205ENST00000563854 NCKAP5LQ9HCH0 1330 aa27.51■■□□□ 1.99
NME3-205ENST00000563854 DNMT1P26358 1616 aaKnown RBP27.51■■□□□ 1.99
NME3-205ENST00000563854 TCOF1Q13428 1488 aaKnown RBP27.51■■□□□ 1.99
NME3-205ENST00000563854 KIF15Q9NS87 1388 aa27.5■■□□□ 1.99
NME3-205ENST00000563854 A2ML1A8K2U0 1454 aa27.5■■□□□ 1.99
NME3-205ENST00000563854 RRP7BPQ9NSQ0 103 aa27.49■■□□□ 1.99
NME3-205ENST00000563854 ABCC3O15438 1527 aa27.48■■□□□ 1.99
NME3-205ENST00000563854 ZC3H13Q5T200 1668 aaKnown RBP27.48■■□□□ 1.99
NME3-205ENST00000563854 PLA2R1Q13018 1463 aa27.46■■□□□ 1.99
NME3-205ENST00000563854 MROH1Q8NDA8 1641 aa27.46■■□□□ 1.99
NME3-205ENST00000563854 CHIC2Q9UKJ5 165 aa27.45■■□□□ 1.98
NME3-205ENST00000563854 CEP152O94986 1710 aa27.44■■□□□ 1.98
NME3-205ENST00000563854 FAM50AQ14320 339 aaKnown RBP27.43■■□□□ 1.98
NME3-205ENST00000563854 ERBINQ96RT1 1412 aa27.41■■□□□ 1.98
NME3-205ENST00000563854 PKD2Q13563 968 aa27.41■■□□□ 1.98
NME3-205ENST00000563854 ANKRD30AQ9BXX3 1397 aa27.39■■□□□ 1.98
NME3-205ENST00000563854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.38■■□□□ 1.97
NME3-205ENST00000563854 PRDM15P57071 1507 aaPredicted RBP27.37■■□□□ 1.97
NME3-205ENST00000563854 LTBP4Q8N2S1 1624 aa27.37■■□□□ 1.97
NME3-205ENST00000563854 NLRP1Q9C000 1473 aa27.37■■□□□ 1.97
NME3-205ENST00000563854 ERVK-7P63135 1459 aa27.35■■□□□ 1.97
NME3-205ENST00000563854 SPATA31D1Q6ZQQ2 1576 aa27.35■■□□□ 1.97
NME3-205ENST00000563854 UGGT1Q9NYU2 1555 aa27.35■■□□□ 1.97
NME3-205ENST00000563854 POLR1AO95602 1720 aaPredicted RBP27.33■■□□□ 1.97
NME3-205ENST00000563854 ZNF335Q9H4Z2 1342 aaPredicted RBP27.33■■□□□ 1.97
NME3-205ENST00000563854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.33■■□□□ 1.97
NME3-205ENST00000563854 DEPDC5O75140 1603 aa27.3■■□□□ 1.96
NME3-205ENST00000563854 KANK1Q14678 1352 aa27.3■■□□□ 1.96
NME3-205ENST00000563854 CFAP65Q6ZU64 1925 aaKnown RBP27.29■■□□□ 1.96
NME3-205ENST00000563854 THEMISQ8N1K5 641 aaPredicted RBP27.29■■□□□ 1.96
NME3-205ENST00000563854 NEURL4Q96JN8 1562 aa27.28■■□□□ 1.96
NME3-205ENST00000563854 PPARGC1BQ86YN6 1023 aaKnown RBP27.28■■□□□ 1.96
NME3-205ENST00000563854 ADGRL2O95490 1459 aa27.27■■□□□ 1.96
NME3-205ENST00000563854 ANKLE2Q86XL3 938 aa27.26■■□□□ 1.95
NME3-205ENST00000563854 ARHGAP31Q2M1Z3 1444 aa27.23■■□□□ 1.95
NME3-205ENST00000563854 IQSEC2Q5JU85 1478 aa27.2■■□□□ 1.95
NME3-205ENST00000563854 UBR1Q8IWV7 1749 aa27.19■■□□□ 1.94
NME3-205ENST00000563854 NPHP4O75161 1426 aaPredicted RBP27.18■■□□□ 1.94
NME3-205ENST00000563854 ANKRD50Q9ULJ7 1429 aa27.18■■□□□ 1.94
NME3-205ENST00000563854 VWDEQ8N2E2 1590 aa27.18■■□□□ 1.94
NME3-205ENST00000563854 LMTK2Q8IWU2 1503 aa27.16■■□□□ 1.94
NME3-205ENST00000563854 ITGAEP38570 1179 aa27.15■■□□□ 1.94
NME3-205ENST00000563854 IQGAP1P46940 1657 aa27.14■■□□□ 1.94
NME3-205ENST00000563854 EFCAB6Q5THR3 1501 aa27.13■■□□□ 1.93
NME3-205ENST00000563854 MED14O60244 1454 aa27.13■■□□□ 1.93
NME3-205ENST00000563854 PIK3C2BO00750 1634 aa27.12■■□□□ 1.93
NME3-205ENST00000563854 STAG3Q9UJ98 1225 aa27.11■■□□□ 1.93
NME3-205ENST00000563854 UBAP1LF5GYI3 381 aa27.1■■□□□ 1.93
NME3-205ENST00000563854 SCAF11Q99590 1463 aaKnown RBP27.08■■□□□ 1.93
NME3-205ENST00000563854 CPS1P31327 1500 aa27.08■■□□□ 1.93
NME3-205ENST00000563854 SYNMO15061 1565 aa27.08■■□□□ 1.93
NME3-205ENST00000563854 ROCK1Q13464 1354 aa27.05■■□□□ 1.92
NME3-205ENST00000563854 SLIT1O75093 1534 aa27.05■■□□□ 1.92
NME3-205ENST00000563854 UNC13BO14795 1591 aa27.05■■□□□ 1.92
NME3-205ENST00000563854 TXNDC2Q86VQ3 553 aa27.04■■□□□ 1.92
NME3-205ENST00000563854 ARHGAP23Q9P227 1491 aa27.04■■□□□ 1.92
NME3-205ENST00000563854 IDI1Q13907 227 aa27.03■■□□□ 1.92
NME3-205ENST00000563854 TET3O43151 1660 aa27.02■■□□□ 1.92
NME3-205ENST00000563854 NOS1P29475 1434 aa27.02■■□□□ 1.92
NME3-205ENST00000563854 LTKP29376 864 aa27.02■■□□□ 1.92
NME3-205ENST00000563854 EID1Q9Y6B2 187 aa27.02■■□□□ 1.92
NME3-205ENST00000563854 TMEM2Q9UHN6 1383 aa26.99■■□□□ 1.91
NME3-205ENST00000563854 SCAF1Q9H7N4 1312 aaKnown RBP26.99■■□□□ 1.91
NME3-205ENST00000563854 ADGRB3O60242 1522 aa26.99■■□□□ 1.91
NME3-205ENST00000563854 RPRD2Q5VT52 1461 aaKnown RBP26.99■■□□□ 1.91
NME3-205ENST00000563854 GCC2Q8IWJ2 1684 aa26.98■■□□□ 1.91
NME3-205ENST00000563854 KDM5AP29375 1690 aaKnown RBP26.97■■□□□ 1.91
NME3-205ENST00000563854 STRCP1A6NGW2 1772 aa26.96■■□□□ 1.91
NME3-205ENST00000563854 PIP4K2BP78356 416 aa26.94■■□□□ 1.9
NME3-205ENST00000563854 SLC52A1Q9NWF4 448 aa26.93■■□□□ 1.9
NME3-205ENST00000563854 IQGAP3Q86VI3 1631 aa26.93■■□□□ 1.9
NME3-205ENST00000563854 E9PCH4 1651 aa26.92■■□□□ 1.9
NME3-205ENST00000563854 NUP155O75694 1391 aa26.91■■□□□ 1.9
NME3-205ENST00000563854 TOM1O60784 492 aa26.9■■□□□ 1.9
NME3-205ENST00000563854 RRBP1Q9P2E9 1410 aaKnown RBP26.9■■□□□ 1.9
NME3-205ENST00000563854 LRRC7Q96NW7 1537 aa26.89■■□□□ 1.89
NME3-205ENST00000563854 SENP3Q9H4L4 574 aaPredicted RBP26.88■■□□□ 1.89
NME3-205ENST00000563854 CHGAP10645 457 aaKnown RBP26.87■■□□□ 1.89
NME3-205ENST00000563854 DISP3Q9P2K9 1392 aa26.86■■□□□ 1.89
NME3-205ENST00000563854 MYO5BQ9ULV0 1848 aa26.86■■□□□ 1.89
NME3-205ENST00000563854 BCANQ96GW7 911 aa26.86■■□□□ 1.89
NME3-205ENST00000563854 SLC26A8Q96RN1 970 aa26.83■■□□□ 1.89
NME3-205ENST00000563854 PPP1R15AO75807 674 aaPredicted RBP26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms