RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	FAM135A	Q9P2D6	1515 aa		33.23	■■■□□ 2.91
CHD9-208	ENST00000563410	MAST1	Q9Y2H9	1570 aa		33.21	■■■□□ 2.91
CHD9-208	ENST00000563410	TSPY4	P0CV99	314 aa		33.21	■■■□□ 2.91
CHD9-208	ENST00000563410	TSPY10	P0CW01	314 aa		33.21	■■■□□ 2.91
CHD9-208	ENST00000563410	TCOF1	Q13428	1488 aa	Known RBP	33.2	■■■□□ 2.91
CHD9-208	ENST00000563410	DNMT1	P26358	1616 aa	Known RBP	33.19	■■■□□ 2.9
CHD9-208	ENST00000563410	A2ML1	A8K2U0	1454 aa		33.18	■■■□□ 2.9
CHD9-208	ENST00000563410	MYOM3	Q5VTT5	1437 aa		33.18	■■■□□ 2.9
CHD9-208	ENST00000563410	PZP	P20742	1482 aa		33.18	■■■□□ 2.9
CHD9-208	ENST00000563410	PKD2	Q13563	968 aa		33.16	■■■□□ 2.9
CHD9-208	ENST00000563410	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.16	■■■□□ 2.9
CHD9-208	ENST00000563410	MIA2	Q96PC5	1412 aa		33.16	■■■□□ 2.9
CHD9-208	ENST00000563410	WASHC2C	Q9Y4E1	1318 aa		33.14	■■■□□ 2.9
CHD9-208	ENST00000563410	RNF17	Q9BXT8	1623 aa	Known RBP	33.13	■■■□□ 2.89
CHD9-208	ENST00000563410	IQSEC2	Q5JU85	1478 aa		33.12	■■■□□ 2.89
CHD9-208	ENST00000563410	TNR	Q92752	1358 aa		33.12	■■■□□ 2.89
CHD9-208	ENST00000563410	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.09	■■■□□ 2.89
CHD9-208	ENST00000563410	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	33.08	■■■□□ 2.89
CHD9-208	ENST00000563410	POLR1A	O95602	1720 aa	Predicted RBP	33.07	■■■□□ 2.88
CHD9-208	ENST00000563410	ZC3H13	Q5T200	1668 aa	Known RBP	33.05	■■■□□ 2.88
CHD9-208	ENST00000563410	ABCC3	O15438	1527 aa		33.03	■■■□□ 2.88
CHD9-208	ENST00000563410	MROH1	Q8NDA8	1641 aa		33.03	■■■□□ 2.88
CHD9-208	ENST00000563410	CROCC2	H7BZ55	1655 aa		33.01	■■■□□ 2.88
CHD9-208	ENST00000563410	NEURL4	Q96JN8	1562 aa		33.01	■■■□□ 2.88
CHD9-208	ENST00000563410	PTPN23	Q9H3S7	1636 aa		32.99	■■■□□ 2.87
CHD9-208	ENST00000563410	NLRP1	Q9C000	1473 aa		32.99	■■■□□ 2.87
CHD9-208	ENST00000563410	CEP152	O94986	1710 aa		32.98	■■■□□ 2.87
CHD9-208	ENST00000563410	DUOX2	Q9NRD8	1548 aa		32.97	■■■□□ 2.87
CHD9-208	ENST00000563410	CFAP65	Q6ZU64	1925 aa	Known RBP	32.96	■■■□□ 2.87
CHD9-208	ENST00000563410	SPATA31D1	Q6ZQQ2	1576 aa		32.95	■■■□□ 2.86
CHD9-208	ENST00000563410	UGGT1	Q9NYU2	1555 aa		32.95	■■■□□ 2.86
CHD9-208	ENST00000563410	ABCC5	O15440	1437 aa		32.94	■■■□□ 2.86
CHD9-208	ENST00000563410	SHANK2	Q9UPX8	1470 aa		32.94	■■■□□ 2.86
CHD9-208	ENST00000563410	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.94	■■■□□ 2.86	3e-10	■■■■■ 27.7
CHD9-208	ENST00000563410	APLP2	Q06481	763 aa		32.93	■■■□□ 2.86
CHD9-208	ENST00000563410	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.9	■■■□□ 2.86
CHD9-208	ENST00000563410	ERVK-7	P63135	1459 aa		32.9	■■■□□ 2.86
CHD9-208	ENST00000563410	KIF15	Q9NS87	1388 aa		32.89	■■■□□ 2.86
CHD9-208	ENST00000563410	FGD6	Q6ZV73	1430 aa		32.88	■■■□□ 2.85
CHD9-208	ENST00000563410	DEPDC5	O75140	1603 aa		32.88	■■■□□ 2.85
CHD9-208	ENST00000563410	DAPK1	P53355	1430 aa		32.87	■■■□□ 2.85
CHD9-208	ENST00000563410	ANKLE2	Q86XL3	938 aa		32.86	■■■□□ 2.85
CHD9-208	ENST00000563410	PRDM15	P57071	1507 aa	Predicted RBP	32.86	■■■□□ 2.85
CHD9-208	ENST00000563410	ERBIN	Q96RT1	1412 aa		32.85	■■■□□ 2.85
CHD9-208	ENST00000563410	MED14	O60244	1454 aa		32.84	■■■□□ 2.85
CHD9-208	ENST00000563410	RRP7BP	Q9NSQ0	103 aa		32.83	■■■□□ 2.85
CHD9-208	ENST00000563410	UBAP1L	F5GYI3	381 aa		32.81	■■■□□ 2.84
CHD9-208	ENST00000563410	VWDE	Q8N2E2	1590 aa		32.8	■■■□□ 2.84
CHD9-208	ENST00000563410	UBR1	Q8IWV7	1749 aa		32.8	■■■□□ 2.84
CHD9-208	ENST00000563410	NPHP4	O75161	1426 aa	Predicted RBP	32.79	■■■□□ 2.84
CHD9-208	ENST00000563410	CPS1	P31327	1500 aa		32.79	■■■□□ 2.84
CHD9-208	ENST00000563410	IQGAP1	P46940	1657 aa		32.78	■■■□□ 2.84
CHD9-208	ENST00000563410	ARHGAP31	Q2M1Z3	1444 aa		32.77	■■■□□ 2.84
CHD9-208	ENST00000563410	DISP3	Q9P2K9	1392 aa		32.76	■■■□□ 2.83
CHD9-208	ENST00000563410	CHIC2	Q9UKJ5	165 aa		32.72	■■■□□ 2.83
CHD9-208	ENST00000563410	ANKRD30A	Q9BXX3	1397 aa		32.7	■■■□□ 2.83
CHD9-208	ENST00000563410	STRCP1	A6NGW2	1772 aa		32.7	■■■□□ 2.82
CHD9-208	ENST00000563410	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.69	■■■□□ 2.82
CHD9-208	ENST00000563410	LMTK2	Q8IWU2	1503 aa		32.65	■■■□□ 2.82
CHD9-208	ENST00000563410	ADGRL2	O95490	1459 aa		32.64	■■■□□ 2.82
CHD9-208	ENST00000563410	KANK1	Q14678	1352 aa		32.64	■■■□□ 2.82
CHD9-208	ENST00000563410	ILDR2	Q71H61	639 aa		32.64	■■■□□ 2.82
CHD9-208	ENST00000563410	ARHGAP23	Q9P227	1491 aa		32.64	■■■□□ 2.82
CHD9-208	ENST00000563410	PIK3C2B	O00750	1634 aa		32.63	■■■□□ 2.81
CHD9-208	ENST00000563410	SLIT1	O75093	1534 aa		32.63	■■■□□ 2.81
CHD9-208	ENST00000563410	SCAF11	Q99590	1463 aa	Known RBP	32.61	■■■□□ 2.81
CHD9-208	ENST00000563410	LTK	P29376	864 aa		32.59	■■■□□ 2.81
CHD9-208	ENST00000563410	TOM1	O60784	492 aa		32.58	■■■□□ 2.81
CHD9-208	ENST00000563410	ALK	Q9UM73	1620 aa		32.58	■■■□□ 2.81
CHD9-208	ENST00000563410	FAM50A	Q14320	339 aa	Known RBP	32.56	■■■□□ 2.8
CHD9-208	ENST00000563410	KDM5A	P29375	1690 aa	Known RBP	32.56	■■■□□ 2.8
CHD9-208	ENST00000563410	SYNM	O15061	1565 aa		32.55	■■■□□ 2.8
CHD9-208	ENST00000563410	PIP4K2B	P78356	416 aa		32.55	■■■□□ 2.8
CHD9-208	ENST00000563410	EFCAB6	Q5THR3	1501 aa		32.55	■■■□□ 2.8
CHD9-208	ENST00000563410	LRRC7	Q96NW7	1537 aa		32.55	■■■□□ 2.8
CHD9-208	ENST00000563410	TXNDC2	Q86VQ3	553 aa		32.53	■■■□□ 2.8
CHD9-208	ENST00000563410	SCAF1	Q9H7N4	1312 aa	Known RBP	32.52	■■■□□ 2.8
CHD9-208	ENST00000563410	NOS1	P29475	1434 aa		32.5	■■■□□ 2.79
CHD9-208	ENST00000563410	TMEM2	Q9UHN6	1383 aa		32.49	■■■□□ 2.79
CHD9-208	ENST00000563410	HSPA1L	P34931	641 aa		32.49	■■■□□ 2.79
CHD9-208	ENST00000563410	IDI1	Q13907	227 aa		32.49	■■■□□ 2.79
CHD9-208	ENST00000563410	ANKRD50	Q9ULJ7	1429 aa		32.48	■■■□□ 2.79
CHD9-208	ENST00000563410	EID1	Q9Y6B2	187 aa		32.46	■■■□□ 2.79
CHD9-208	ENST00000563410	XIRP1	Q702N8	1843 aa	Known RBP	32.45	■■■□□ 2.79
CHD9-208	ENST00000563410	STAG3	Q9UJ98	1225 aa		32.44	■■■□□ 2.78
CHD9-208	ENST00000563410	TET3	O43151	1660 aa		32.41	■■■□□ 2.78
CHD9-208	ENST00000563410	ADGRB3	O60242	1522 aa		32.41	■■■□□ 2.78
CHD9-208	ENST00000563410	SOCS7	O14512	581 aa		32.39	■■■□□ 2.78
CHD9-208	ENST00000563410	RPRD2	Q5VT52	1461 aa	Known RBP	32.39	■■■□□ 2.78
CHD9-208	ENST00000563410	MYO5B	Q9ULV0	1848 aa		32.37	■■■□□ 2.77
CHD9-208	ENST00000563410	GCC2	Q8IWJ2	1684 aa		32.37	■■■□□ 2.77
CHD9-208	ENST00000563410	UNC13B	O14795	1591 aa		32.37	■■■□□ 2.77
CHD9-208	ENST00000563410	SLC52A1	Q9NWF4	448 aa		32.35	■■■□□ 2.77
CHD9-208	ENST00000563410	MED1	Q15648	1581 aa	Predicted RBP	32.33	■■■□□ 2.77
CHD9-208	ENST00000563410	ROCK1	Q13464	1354 aa		32.31	■■■□□ 2.76
CHD9-208	ENST00000563410		E9PCH4	1651 aa		32.28	■■■□□ 2.76
CHD9-208	ENST00000563410	SLC26A8	Q96RN1	970 aa		32.27	■■■□□ 2.76
CHD9-208	ENST00000563410	TMEM131L	A2VDJ0	1609 aa		32.26	■■■□□ 2.76
CHD9-208	ENST00000563410	IQGAP3	Q86VI3	1631 aa		32.26	■■■□□ 2.75
CHD9-208	ENST00000563410	ZFYVE9	O95405	1425 aa		32.25	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms