RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-208ENST00000563410 NISCHQ9Y2I1 1504 aa52.63■■■■■ 6.02
CHD9-208ENST00000563410 CCDC180Q9P1Z9 1646 aa47.23■■■■■ 5.15
CHD9-208ENST00000563410 ABCC9O60706 1549 aa47.07■■■■■ 5.13
CHD9-208ENST00000563410 RB1CC1Q8TDY2 1594 aa44.86■■■■■ 4.77
CHD9-208ENST00000563410 NACADO15069 1562 aa44.58■■■■■ 4.73
CHD9-208ENST00000563410 DCAF8L2P0C7V8 631 aa44.27■■■■■ 4.68
CHD9-208ENST00000563410 DNAJC5BQ9UF47 199 aa44.11■■■■■ 4.65
CHD9-208ENST00000563410 MYO15BQ96JP2 1530 aa44.01■■■■■ 4.64
CHD9-208ENST00000563410 UNC13AQ9UPW8 1703 aa43.99■■■■■ 4.63
CHD9-208ENST00000563410 PABPN1Q86U42 306 aaKnown RBP eCLIP43.82■■■■■ 4.61
CHD9-208ENST00000563410 ZCCHC6Q5VYS8 1495 aaKnown RBP43.64■■■■■ 4.58
CHD9-208ENST00000563410 BICRAQ9NZM4 1560 aa43.62■■■■■ 4.57
CHD9-208ENST00000563410 DCAF1Q9Y4B6 1507 aa43.49■■■■■ 4.55
CHD9-208ENST00000563410 SCRIBQ14160 1630 aa43■■■■■ 4.47
CHD9-208ENST00000563410 SHROOM4Q9ULL8 1493 aa42.97■■■■■ 4.47
CHD9-208ENST00000563410 CC2D2AQ9P2K1 1620 aa42.57■■■■■ 4.41
CHD9-208ENST00000563410 EIF4G1Q04637 1599 aaKnown RBP42.5■■■■■ 4.39
CHD9-208ENST00000563410 CECR2Q9BXF3 1484 aa42.39■■■■■ 4.38
CHD9-208ENST00000563410 NCAPD3P42695 1498 aa41.15■■■■■ 4.18
CHD9-208ENST00000563410 SMARCA4P51532 1647 aa41.06■■■■■ 4.16
CHD9-208ENST00000563410 ATAD2BQ9ULI0 1458 aa41.04■■■■■ 4.16
CHD9-208ENST00000563410 SMARCA2P51531 1590 aa40.92■■■■■ 4.14
CHD9-208ENST00000563410 HMGXB3Q12766 1538 aa40.88■■■■■ 4.13
CHD9-208ENST00000563410 BAZ1AQ9NRL2 1556 aaPredicted RBP40.83■■■■■ 4.13
CHD9-208ENST00000563410 PEG3Q9GZU2 1588 aa40.67■■■■■ 4.1
CHD9-208ENST00000563410 BAZ1BQ9UIG0 1483 aaKnown RBP40.63■■■■■ 4.09
CHD9-208ENST00000563410 ERCC6Q03468 1493 aa40.59■■■■■ 4.09
CHD9-208ENST00000563410 MROH2BQ7Z745 1585 aa40.57■■■■■ 4.08
CHD9-208ENST00000563410 CUX2O14529 1486 aa40.53■■■■■ 4.08
CHD9-208ENST00000563410 NESP48681 1621 aa40.5■■■■■ 4.07
CHD9-208ENST00000563410 DNAJC5Q9H3Z4 198 aa40.4■■■■■ 4.06
CHD9-208ENST00000563410 LAMC3Q9Y6N6 1575 aa40.23■■■■■ 4.03
CHD9-208ENST00000563410 WIZO95785 1651 aa40.11■■■■■ 4.01
CHD9-208ENST00000563410 THOC2Q8NI27 1593 aaKnown RBP40.1■■■■■ 4.01
CHD9-208ENST00000563410 KIF21AQ7Z4S6 1674 aa40.03■■■■■ 4
CHD9-208ENST00000563410 PDS5BQ9NTI5 1447 aa39.93■■■■□ 3.98
CHD9-208ENST00000563410 CADPSQ9ULU8 1353 aa39.88■■■■□ 3.97
CHD9-208ENST00000563410 RSF1Q96T23 1441 aaPredicted RBP39.74■■■■□ 3.95
CHD9-208ENST00000563410 MRC2Q9UBG0 1479 aa39.62■■■■□ 3.93
CHD9-208ENST00000563410 TOP2AP11388 1531 aaKnown RBP39.57■■■■□ 3.93
CHD9-208ENST00000563410 WDR62O43379 1518 aa39.54■■■■□ 3.92
CHD9-208ENST00000563410 CFTRP13569 1480 aa39.48■■■■□ 3.91
CHD9-208ENST00000563410 CEP164Q9UPV0 1460 aa39.47■■■■□ 3.91
CHD9-208ENST00000563410 FANCD2Q9BXW9 1451 aa39.44■■■■□ 3.9
CHD9-208ENST00000563410 PRDM2Q13029 1718 aa39.19■■■■□ 3.86
CHD9-208ENST00000563410 URB2Q14146 1524 aaKnown RBP39.14■■■■□ 3.86
CHD9-208ENST00000563410 CCDC88BA6NC98 1476 aa39.12■■■■□ 3.85
CHD9-208ENST00000563410 TOPBP1Q92547 1522 aa38.73■■■■□ 3.79
CHD9-208ENST00000563410 IFT140Q96RY7 1462 aa38.67■■■■□ 3.78
CHD9-208ENST00000563410 OSCARQ8IYS5 282 aa38.66■■■■□ 3.78
CHD9-208ENST00000563410 ZNF608Q9ULD9 1512 aaPredicted RBP38.63■■■■□ 3.78
CHD9-208ENST00000563410 TRIM41Q8WV44 630 aa38.62■■■■□ 3.77
CHD9-208ENST00000563410 ABCC8Q09428 1581 aa38.61■■■■□ 3.77
CHD9-208ENST00000563410 DNMBPQ6XZF7 1577 aa38.6■■■■□ 3.77
CHD9-208ENST00000563410 EIF4G3O43432 1585 aaKnown RBP38.44■■■■□ 3.74
CHD9-208ENST00000563410 TARBP1Q13395 1621 aaKnown RBP38.41■■■■□ 3.74
CHD9-208ENST00000563410 POLA1P09884 1462 aaPredicted RBP38.34■■■■□ 3.73
CHD9-208ENST00000563410 AQRO60306 1485 aaKnown RBP eCLIP38.28■■■■□ 3.72
CHD9-208ENST00000563410 RIMBP3CA6NJZ7 1639 aa38.23■■■■□ 3.71
CHD9-208ENST00000563410 RIMBP3BA6NNM3 1639 aa38.23■■■■□ 3.71
CHD9-208ENST00000563410 RIMBP3Q9UFD9 1639 aa38.23■■■■□ 3.71
CHD9-208ENST00000563410 RAD54L2Q9Y4B4 1467 aa38.19■■■■□ 3.7
CHD9-208ENST00000563410 CHD1O14646 1710 aa38.18■■■■□ 3.7
CHD9-208ENST00000563410 SOGA1O94964 1423 aa38.13■■■■□ 3.7
CHD9-208ENST00000563410 FGD5Q6ZNL6 1462 aa38.1■■■■□ 3.69
CHD9-208ENST00000563410 ARHGEF11O15085 1522 aa38.1■■■■□ 3.69
CHD9-208ENST00000563410 CUX1P39880 1505 aa38.1■■■■□ 3.69
CHD9-208ENST00000563410 TDRD9Q8NDG6 1382 aaKnown RBP38.05■■■■□ 3.68
CHD9-208ENST00000563410 WDR97A6NE52 1622 aa38■■■■□ 3.67
CHD9-208ENST00000563410 SUPT5HO00267 1087 aaKnown RBP37.98■■■■□ 3.67
CHD9-208ENST00000563410 FBLN2P98095 1184 aa37.94■■■■□ 3.66
CHD9-208ENST00000563410 SNAPC4Q5SXM2 1469 aa37.89■■■■□ 3.66
CHD9-208ENST00000563410 GRIN2BQ13224 1484 aa37.79■■■■□ 3.64
CHD9-208ENST00000563410 MAGI1Q96QZ7 1491 aaPredicted RBP37.79■■■■□ 3.64
CHD9-208ENST00000563410 CYB5RLQ6IPT4 315 aa37.75■■■■□ 3.63
CHD9-208ENST00000563410 PBRM1Q86U86 1689 aa37.73■■■■□ 3.63
CHD9-208ENST00000563410 ARAP1Q96P48 1450 aa37.73■■■■□ 3.63
CHD9-208ENST00000563410 CLASP1Q7Z460 1538 aa37.71■■■■□ 3.63
CHD9-208ENST00000563410 CHMP7Q8WUX9 453 aaPredicted RBP37.69■■■■□ 3.62
CHD9-208ENST00000563410 ABCA10Q8WWZ4 1543 aa37.68■■■■□ 3.62
CHD9-208ENST00000563410 GAPVD1Q14C86 1478 aa37.68■■■■□ 3.62
CHD9-208ENST00000563410 SYNJ2O15056 1496 aa37.67■■■■□ 3.62
CHD9-208ENST00000563410 SYNJ1O43426 1573 aa37.66■■■■□ 3.62
CHD9-208ENST00000563410 ABCA5Q8WWZ7 1642 aa37.65■■■■□ 3.62
CHD9-208ENST00000563410 BIVM-ERCC5R4GMW8 1640 aa37.55■■■■□ 3.6
CHD9-208ENST00000563410 TOP2BQ02880 1626 aa37.53■■■■□ 3.6
CHD9-208ENST00000563410 WRNQ14191 1432 aaPredicted RBP eCLIP37.51■■■■□ 3.595e-6■■□□□ 12.5
CHD9-208ENST00000563410 ADAMTS12P58397 1594 aa37.34■■■■□ 3.57
CHD9-208ENST00000563410 GRIN2AQ12879 1464 aa37.33■■■■□ 3.57
CHD9-208ENST00000563410 TRHP20396 242 aaPredicted RBP37.27■■■■□ 3.56
CHD9-208ENST00000563410 CEP170Q5SW79 1584 aa37.22■■■■□ 3.55
CHD9-208ENST00000563410 ERICH3Q5RHP9 1530 aa37.2■■■■□ 3.55
CHD9-208ENST00000563410 NUP160Q12769 1436 aa37.2■■■■□ 3.55
CHD9-208ENST00000563410 FHAD1B1AJZ9 1412 aa37.19■■■■□ 3.54
CHD9-208ENST00000563410 ERCC6L2Q5T890 1561 aa37.15■■■■□ 3.54
CHD9-208ENST00000563410 SHROOM2Q13796 1616 aa37.08■■■■□ 3.53
CHD9-208ENST00000563410 RUSC2Q8N2Y8 1516 aa36.82■■■■□ 3.48
CHD9-208ENST00000563410 PRG4Q92954 1404 aaPredicted RBP36.81■■■■□ 3.48
CHD9-208ENST00000563410 JPH4Q96JJ6 628 aa36.78■■■■□ 3.48
CHD9-208ENST00000563410 IGF1RP08069 1367 aa36.74■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms