RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 WASHC2CQ9Y4E1 1318 aa20.59■□□□□ 0.89
SF3B3-202ENST00000562722 A2ML1A8K2U0 1454 aa20.59■□□□□ 0.89
SF3B3-202ENST00000562722 LOC105371045A0A1W2PR82 267 aa20.59■□□□□ 0.89
SF3B3-202ENST00000562722 KDM5DQ9BY66 1539 aa20.58■□□□□ 0.89
SF3B3-202ENST00000562722 TNRQ92752 1358 aa20.58■□□□□ 0.88
SF3B3-202ENST00000562722 TCOF1Q13428 1488 aaKnown RBP20.57■□□□□ 0.88
SF3B3-202ENST00000562722 LRRC9Q6ZRR7 1453 aa20.57■□□□□ 0.88
SF3B3-202ENST00000562722 FBXO31Q5XUX0 539 aaPredicted RBP20.57■□□□□ 0.88
SF3B3-202ENST00000562722 ARHGEF5Q12774 1597 aa20.56■□□□□ 0.88
SF3B3-202ENST00000562722 PZPP20742 1482 aa20.55■□□□□ 0.88
SF3B3-202ENST00000562722 FAM135AQ9P2D6 1515 aa20.54■□□□□ 0.88
SF3B3-202ENST00000562722 DNMT1P26358 1616 aaKnown RBP20.54■□□□□ 0.88
SF3B3-202ENST00000562722 UBAP1LF5GYI3 381 aa20.53■□□□□ 0.88
SF3B3-202ENST00000562722 KANK4Q5T7N3 995 aaPredicted RBP20.49■□□□□ 0.87
SF3B3-202ENST00000562722 MIA2Q96PC5 1412 aa20.47■□□□□ 0.87
SF3B3-202ENST00000562722 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.46■□□□□ 0.87
SF3B3-202ENST00000562722 SPATA31D1Q6ZQQ2 1576 aa20.46■□□□□ 0.87
SF3B3-202ENST00000562722 MYOM3Q5VTT5 1437 aa20.46■□□□□ 0.87
SF3B3-202ENST00000562722 ANKLE2Q86XL3 938 aa20.46■□□□□ 0.87
SF3B3-202ENST00000562722 THEMISQ8N1K5 641 aaPredicted RBP20.46■□□□□ 0.87
SF3B3-202ENST00000562722 NLRP1Q9C000 1473 aa20.45■□□□□ 0.86
SF3B3-202ENST00000562722 POLR1AO95602 1720 aaPredicted RBP20.45■□□□□ 0.86
SF3B3-202ENST00000562722 MAP3K1Q13233 1512 aa20.45■□□□□ 0.86
SF3B3-202ENST00000562722 MAST1Q9Y2H9 1570 aa20.45■□□□□ 0.86
SF3B3-202ENST00000562722 UGGT1Q9NYU2 1555 aa20.43■□□□□ 0.86
SF3B3-202ENST00000562722 RNF17Q9BXT8 1623 aaKnown RBP20.43■□□□□ 0.86
SF3B3-202ENST00000562722 APLP2Q06481 763 aa20.43■□□□□ 0.86
SF3B3-202ENST00000562722 ILDR2Q71H61 639 aa20.43■□□□□ 0.86
SF3B3-202ENST00000562722 SCAF1Q9H7N4 1312 aaKnown RBP20.43■□□□□ 0.86
SF3B3-202ENST00000562722 ABCC3O15438 1527 aa20.43■□□□□ 0.86
SF3B3-202ENST00000562722 NEURL4Q96JN8 1562 aa20.42■□□□□ 0.86
SF3B3-202ENST00000562722 ZC3H13Q5T200 1668 aaKnown RBP20.41■□□□□ 0.86
SF3B3-202ENST00000562722 EIF2AK4Q9P2K8 1649 aaKnown RBP20.4■□□□□ 0.86
SF3B3-202ENST00000562722 CPS1P31327 1500 aa20.39■□□□□ 0.85
SF3B3-202ENST00000562722 SHANK2Q9UPX8 1470 aa20.39■□□□□ 0.85
SF3B3-202ENST00000562722 NPHP4O75161 1426 aaPredicted RBP20.38■□□□□ 0.85
SF3B3-202ENST00000562722 PIP4K2BP78356 416 aa20.38■□□□□ 0.85
SF3B3-202ENST00000562722 DUOX2Q9NRD8 1548 aa20.37■□□□□ 0.85
SF3B3-202ENST00000562722 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
SF3B3-202ENST00000562722 KIF15Q9NS87 1388 aa20.35■□□□□ 0.85
SF3B3-202ENST00000562722 TOM1O60784 492 aa20.35■□□□□ 0.85
SF3B3-202ENST00000562722 MROH1Q8NDA8 1641 aa20.35■□□□□ 0.85
SF3B3-202ENST00000562722 SOCS7O14512 581 aa20.34■□□□□ 0.85
SF3B3-202ENST00000562722 RRP7BPQ9NSQ0 103 aa20.34■□□□□ 0.85
SF3B3-202ENST00000562722 DEPDC5O75140 1603 aa20.34■□□□□ 0.85
SF3B3-202ENST00000562722 CEP152O94986 1710 aa20.33■□□□□ 0.85
SF3B3-202ENST00000562722 MED14O60244 1454 aa20.33■□□□□ 0.85
SF3B3-202ENST00000562722 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.32■□□□□ 0.842e-8■■■□□ 15.2
SF3B3-202ENST00000562722 ABCC5O15440 1437 aa20.32■□□□□ 0.84
SF3B3-202ENST00000562722 VWDEQ8N2E2 1590 aa20.32■□□□□ 0.84
SF3B3-202ENST00000562722 PTPN23Q9H3S7 1636 aa20.31■□□□□ 0.84
SF3B3-202ENST00000562722 ERBINQ96RT1 1412 aa20.31■□□□□ 0.84
SF3B3-202ENST00000562722 IQGAP1P46940 1657 aa20.31■□□□□ 0.84
SF3B3-202ENST00000562722 CROCC2H7BZ55 1655 aa20.29■□□□□ 0.84
SF3B3-202ENST00000562722 HSPA1LP34931 641 aa20.29■□□□□ 0.84
SF3B3-202ENST00000562722 DAPK1P53355 1430 aa20.28■□□□□ 0.84
SF3B3-202ENST00000562722 PRDM15P57071 1507 aaPredicted RBP20.27■□□□□ 0.84
SF3B3-202ENST00000562722 KANK1Q14678 1352 aa20.27■□□□□ 0.84
SF3B3-202ENST00000562722 FGD6Q6ZV73 1430 aa20.27■□□□□ 0.83
SF3B3-202ENST00000562722 CHIC2Q9UKJ5 165 aa20.26■□□□□ 0.83
SF3B3-202ENST00000562722 CFAP65Q6ZU64 1925 aaKnown RBP20.25■□□□□ 0.83
SF3B3-202ENST00000562722 UBR1Q8IWV7 1749 aa20.24■□□□□ 0.83
SF3B3-202ENST00000562722 SCAF11Q99590 1463 aaKnown RBP20.24■□□□□ 0.83
SF3B3-202ENST00000562722 ANKRD30AQ9BXX3 1397 aa20.24■□□□□ 0.83
SF3B3-202ENST00000562722 ARHGAP31Q2M1Z3 1444 aa20.24■□□□□ 0.83
SF3B3-202ENST00000562722 TXNDC2Q86VQ3 553 aa20.23■□□□□ 0.83
SF3B3-202ENST00000562722 STAG3Q9UJ98 1225 aa20.23■□□□□ 0.83
SF3B3-202ENST00000562722 SENP3Q9H4L4 574 aaPredicted RBP20.22■□□□□ 0.83
SF3B3-202ENST00000562722 EID1Q9Y6B2 187 aa20.22■□□□□ 0.83
SF3B3-202ENST00000562722 LRRC7Q96NW7 1537 aa20.21■□□□□ 0.83
SF3B3-202ENST00000562722 LTKP29376 864 aa20.19■□□□□ 0.82
SF3B3-202ENST00000562722 SYNMO15061 1565 aa20.19■□□□□ 0.82
SF3B3-202ENST00000562722 SLIT1O75093 1534 aa20.18■□□□□ 0.82
SF3B3-202ENST00000562722 FAM50AQ14320 339 aaKnown RBP20.18■□□□□ 0.82
SF3B3-202ENST00000562722 STRCP1A6NGW2 1772 aa20.18■□□□□ 0.82
SF3B3-202ENST00000562722 ARHGAP23Q9P227 1491 aa20.18■□□□□ 0.82
SF3B3-202ENST00000562722 PIK3C2BO00750 1634 aa20.16■□□□□ 0.82
SF3B3-202ENST00000562722 MED1Q15648 1581 aaPredicted RBP20.16■□□□□ 0.82
SF3B3-202ENST00000562722 TMEM2Q9UHN6 1383 aa20.15■□□□□ 0.82
SF3B3-202ENST00000562722 ALKQ9UM73 1620 aa20.14■□□□□ 0.81
SF3B3-202ENST00000562722 LMTK2Q8IWU2 1503 aa20.13■□□□□ 0.81
SF3B3-202ENST00000562722 IDI1Q13907 227 aa20.13■□□□□ 0.81
SF3B3-202ENST00000562722 PHF23Q9BUL5 403 aaPredicted RBP20.13■□□□□ 0.81
SF3B3-202ENST00000562722 EFCAB6Q5THR3 1501 aa20.12■□□□□ 0.81
SF3B3-202ENST00000562722 BCANQ96GW7 911 aa20.09■□□□□ 0.81
SF3B3-202ENST00000562722 ADGRL2O95490 1459 aa20.09■□□□□ 0.81
SF3B3-202ENST00000562722 ANKRD50Q9ULJ7 1429 aa20.07■□□□□ 0.8
SF3B3-202ENST00000562722 NOS1P29475 1434 aa20.06■□□□□ 0.8
SF3B3-202ENST00000562722 SLC26A8Q96RN1 970 aa20.06■□□□□ 0.8
SF3B3-202ENST00000562722 KDM5AP29375 1690 aaKnown RBP20.06■□□□□ 0.8
SF3B3-202ENST00000562722 ADGRB3O60242 1522 aa20.06■□□□□ 0.8
SF3B3-202ENST00000562722 SLC52A1Q9NWF4 448 aa20.05■□□□□ 0.8
SF3B3-202ENST00000562722 TMEM94Q12767 1356 aa20.03■□□□□ 0.8
SF3B3-202ENST00000562722 KCNA6P17658 529 aa20.02■□□□□ 0.8
SF3B3-202ENST00000562722 PROSER2Q86WR7 435 aaPredicted RBP20.02■□□□□ 0.8
SF3B3-202ENST00000562722 RPRD2Q5VT52 1461 aaKnown RBP20.01■□□□□ 0.79
SF3B3-202ENST00000562722 PPP1R15AO75807 674 aaPredicted RBP20.01■□□□□ 0.79
SF3B3-202ENST00000562722 RBM33Q96EV2 1170 aaKnown RBP20■□□□□ 0.79
SF3B3-202ENST00000562722 XIRP1Q702N8 1843 aaKnown RBP19.99■□□□□ 0.79
SF3B3-202ENST00000562722 TET3O43151 1660 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms