RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 NISCHQ9Y2I1 1504 aa32.47■■■□□ 2.79
SF3B3-202ENST00000562722 ABCC9O60706 1549 aa29.27■■■□□ 2.28
SF3B3-202ENST00000562722 CCDC180Q9P1Z9 1646 aa29.13■■■□□ 2.25
SF3B3-202ENST00000562722 RB1CC1Q8TDY2 1594 aa27.81■■■□□ 2.04
SF3B3-202ENST00000562722 NACADO15069 1562 aa27.58■■■□□ 2.01
SF3B3-202ENST00000562722 DCAF8L2P0C7V8 631 aa27.57■■■□□ 2
SF3B3-202ENST00000562722 DNAJC5BQ9UF47 199 aa27.44■■□□□ 1.98
SF3B3-202ENST00000562722 PABPN1Q86U42 306 aaKnown RBP eCLIP27.26■■□□□ 1.95
SF3B3-202ENST00000562722 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
SF3B3-202ENST00000562722 UNC13AQ9UPW8 1703 aa27.1■■□□□ 1.93
SF3B3-202ENST00000562722 BICRAQ9NZM4 1560 aa26.93■■□□□ 1.9
SF3B3-202ENST00000562722 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.9
SF3B3-202ENST00000562722 DCAF1Q9Y4B6 1507 aa26.78■■□□□ 1.88
SF3B3-202ENST00000562722 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
SF3B3-202ENST00000562722 SHROOM4Q9ULL8 1493 aa26.59■■□□□ 1.85
SF3B3-202ENST00000562722 CC2D2AQ9P2K1 1620 aa26.39■■□□□ 1.82
SF3B3-202ENST00000562722 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
SF3B3-202ENST00000562722 EIF4G1Q04637 1599 aaKnown RBP26.33■■□□□ 1.8
SF3B3-202ENST00000562722 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
SF3B3-202ENST00000562722 ATAD2BQ9ULI0 1458 aa25.39■■□□□ 1.65
SF3B3-202ENST00000562722 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
SF3B3-202ENST00000562722 SMARCA2P51531 1590 aa25.32■■□□□ 1.64
SF3B3-202ENST00000562722 ERCC6Q03468 1493 aa25.32■■□□□ 1.64
SF3B3-202ENST00000562722 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
SF3B3-202ENST00000562722 DNAJC5Q9H3Z4 198 aa25.26■■□□□ 1.63
SF3B3-202ENST00000562722 BAZ1AQ9NRL2 1556 aaPredicted RBP25.22■■□□□ 1.63
SF3B3-202ENST00000562722 CUX2O14529 1486 aa25.21■■□□□ 1.63
SF3B3-202ENST00000562722 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
SF3B3-202ENST00000562722 NESP48681 1621 aa25.1■■□□□ 1.61
SF3B3-202ENST00000562722 PEG3Q9GZU2 1588 aa25.05■■□□□ 1.6
SF3B3-202ENST00000562722 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
SF3B3-202ENST00000562722 LAMC3Q9Y6N6 1575 aa24.9■■□□□ 1.58
SF3B3-202ENST00000562722 THOC2Q8NI27 1593 aaKnown RBP24.83■■□□□ 1.57
SF3B3-202ENST00000562722 PDS5BQ9NTI5 1447 aa24.8■■□□□ 1.56
SF3B3-202ENST00000562722 KIF21AQ7Z4S6 1674 aa24.75■■□□□ 1.55
SF3B3-202ENST00000562722 WIZO95785 1651 aa24.72■■□□□ 1.55
SF3B3-202ENST00000562722 CADPSQ9ULU8 1353 aa24.7■■□□□ 1.55
SF3B3-202ENST00000562722 MRC2Q9UBG0 1479 aa24.58■■□□□ 1.53
SF3B3-202ENST00000562722 RSF1Q96T23 1441 aaPredicted RBP24.49■■□□□ 1.51
SF3B3-202ENST00000562722 WDR62O43379 1518 aa24.49■■□□□ 1.51
SF3B3-202ENST00000562722 CEP164Q9UPV0 1460 aa24.48■■□□□ 1.51
SF3B3-202ENST00000562722 FANCD2Q9BXW9 1451 aa24.45■■□□□ 1.5
SF3B3-202ENST00000562722 TOP2AP11388 1531 aaKnown RBP24.42■■□□□ 1.5
SF3B3-202ENST00000562722 CFTRP13569 1480 aa24.39■■□□□ 1.5
SF3B3-202ENST00000562722 TRIM41Q8WV44 630 aa24.23■■□□□ 1.47
SF3B3-202ENST00000562722 URB2Q14146 1524 aaKnown RBP24.22■■□□□ 1.47
SF3B3-202ENST00000562722 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
SF3B3-202ENST00000562722 PRDM2Q13029 1718 aa24.11■■□□□ 1.45
SF3B3-202ENST00000562722 OSCARQ8IYS5 282 aa24.09■■□□□ 1.45
SF3B3-202ENST00000562722 IFT140Q96RY7 1462 aa23.99■■□□□ 1.43
SF3B3-202ENST00000562722 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
SF3B3-202ENST00000562722 ZNF608Q9ULD9 1512 aaPredicted RBP23.94■■□□□ 1.42
SF3B3-202ENST00000562722 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
SF3B3-202ENST00000562722 DNMBPQ6XZF7 1577 aa23.86■■□□□ 1.41
SF3B3-202ENST00000562722 EIF4G3O43432 1585 aaKnown RBP23.81■■□□□ 1.4
SF3B3-202ENST00000562722 RIMBP3CA6NJZ7 1639 aa23.74■■□□□ 1.39
SF3B3-202ENST00000562722 RIMBP3BA6NNM3 1639 aa23.74■■□□□ 1.39
SF3B3-202ENST00000562722 RIMBP3Q9UFD9 1639 aa23.74■■□□□ 1.39
SF3B3-202ENST00000562722 AQRO60306 1485 aaKnown RBP eCLIP23.73■■□□□ 1.391e-7■■■■■ 32.6
SF3B3-202ENST00000562722 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
SF3B3-202ENST00000562722 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
SF3B3-202ENST00000562722 FBLN2P98095 1184 aa23.68■■□□□ 1.38
SF3B3-202ENST00000562722 ARHGEF11O15085 1522 aa23.68■■□□□ 1.38
SF3B3-202ENST00000562722 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
SF3B3-202ENST00000562722 SOGA1O94964 1423 aa23.63■■□□□ 1.37
SF3B3-202ENST00000562722 CHD1O14646 1710 aa23.62■■□□□ 1.37
SF3B3-202ENST00000562722 TDRD9Q8NDG6 1382 aaKnown RBP23.6■■□□□ 1.37
SF3B3-202ENST00000562722 FGD5Q6ZNL6 1462 aa23.57■■□□□ 1.36
SF3B3-202ENST00000562722 CYB5RLQ6IPT4 315 aa23.56■■□□□ 1.36
SF3B3-202ENST00000562722 CUX1P39880 1505 aa23.52■■□□□ 1.36
SF3B3-202ENST00000562722 SNAPC4Q5SXM2 1469 aa23.5■■□□□ 1.35
SF3B3-202ENST00000562722 SUPT5HO00267 1087 aaKnown RBP23.48■■□□□ 1.35
SF3B3-202ENST00000562722 WDR97A6NE52 1622 aa23.48■■□□□ 1.35
SF3B3-202ENST00000562722 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
SF3B3-202ENST00000562722 ARAP1Q96P48 1450 aa23.43■■□□□ 1.34
SF3B3-202ENST00000562722 GRIN2BQ13224 1484 aa23.43■■□□□ 1.34
SF3B3-202ENST00000562722 MAGI1Q96QZ7 1491 aaPredicted RBP23.42■■□□□ 1.34
SF3B3-202ENST00000562722 SYNJ1O43426 1573 aa23.37■■□□□ 1.33
SF3B3-202ENST00000562722 TRHP20396 242 aaPredicted RBP23.37■■□□□ 1.33
SF3B3-202ENST00000562722 SYNJ2O15056 1496 aa23.35■■□□□ 1.33
SF3B3-202ENST00000562722 CLASP1Q7Z460 1538 aa23.34■■□□□ 1.33
SF3B3-202ENST00000562722 GAPVD1Q14C86 1478 aa23.33■■□□□ 1.33
SF3B3-202ENST00000562722 PBRM1Q86U86 1689 aa23.3■■□□□ 1.32
SF3B3-202ENST00000562722 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
SF3B3-202ENST00000562722 ABCA5Q8WWZ7 1642 aa23.23■■□□□ 1.31
SF3B3-202ENST00000562722 WRNQ14191 1432 aaPredicted RBP eCLIP23.22■■□□□ 1.31
SF3B3-202ENST00000562722 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
SF3B3-202ENST00000562722 BIVM-ERCC5R4GMW8 1640 aa23.11■■□□□ 1.29
SF3B3-202ENST00000562722 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
SF3B3-202ENST00000562722 ADAMTS12P58397 1594 aa23.09■■□□□ 1.29
SF3B3-202ENST00000562722 FHAD1B1AJZ9 1412 aa23.04■■□□□ 1.28
SF3B3-202ENST00000562722 CEP170Q5SW79 1584 aa23.02■■□□□ 1.28
SF3B3-202ENST00000562722 NUP160Q12769 1436 aa23.01■■□□□ 1.27
SF3B3-202ENST00000562722 ERCC6L2Q5T890 1561 aa22.99■■□□□ 1.27
SF3B3-202ENST00000562722 ERICH3Q5RHP9 1530 aa22.98■■□□□ 1.27
SF3B3-202ENST00000562722 SHROOM2Q13796 1616 aa22.9■■□□□ 1.26
SF3B3-202ENST00000562722 PRG4Q92954 1404 aaPredicted RBP22.84■■□□□ 1.25
SF3B3-202ENST00000562722 JPH4Q96JJ6 628 aa22.81■■□□□ 1.24
SF3B3-202ENST00000562722 RUSC2Q8N2Y8 1516 aa22.76■■□□□ 1.23
SF3B3-202ENST00000562722 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms