RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CAMSAP1Q5T5Y3 1602 aa15.97■□□□□ 0.15
LDLR-214ENST00000560628 RRP7BPQ9NSQ0 103 aa15.95■□□□□ 0.14
LDLR-214ENST00000560628 TNRQ92752 1358 aa15.95■□□□□ 0.14
LDLR-214ENST00000560628 PKD2Q13563 968 aa15.94■□□□□ 0.14
LDLR-214ENST00000560628 KDM5DQ9BY66 1539 aa15.93■□□□□ 0.14
LDLR-214ENST00000560628 ABCC5O15440 1437 aa15.93■□□□□ 0.14
LDLR-214ENST00000560628 CHIC2Q9UKJ5 165 aa15.92■□□□□ 0.14
LDLR-214ENST00000560628 MYO3AQ8NEV4 1616 aa15.92■□□□□ 0.14
LDLR-214ENST00000560628 MAST1Q9Y2H9 1570 aa15.92■□□□□ 0.14
LDLR-214ENST00000560628 CEP170BQ9Y4F5 1589 aaPredicted RBP15.92■□□□□ 0.14
LDLR-214ENST00000560628 A2ML1A8K2U0 1454 aa15.91■□□□□ 0.14
LDLR-214ENST00000560628 PZPP20742 1482 aa15.91■□□□□ 0.14
LDLR-214ENST00000560628 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.9■□□□□ 0.14
LDLR-214ENST00000560628 ZNF335Q9H4Z2 1342 aaPredicted RBP15.9■□□□□ 0.14
LDLR-214ENST00000560628 KIF15Q9NS87 1388 aa15.89■□□□□ 0.13
LDLR-214ENST00000560628 FGD6Q6ZV73 1430 aa15.89■□□□□ 0.13
LDLR-214ENST00000560628 PTPN23Q9H3S7 1636 aa15.89■□□□□ 0.13
LDLR-214ENST00000560628 FAM50AQ14320 339 aaKnown RBP15.88■□□□□ 0.13
LDLR-214ENST00000560628 PLA2R1Q13018 1463 aa15.88■□□□□ 0.13
LDLR-214ENST00000560628 DAPK1P53355 1430 aa15.87■□□□□ 0.13
LDLR-214ENST00000560628 THEMISQ8N1K5 641 aaPredicted RBP15.87■□□□□ 0.13
LDLR-214ENST00000560628 ZNF142P52746 1687 aaPredicted RBP15.86■□□□□ 0.13
LDLR-214ENST00000560628 TCOF1Q13428 1488 aaKnown RBP15.86■□□□□ 0.13
LDLR-214ENST00000560628 DUOX2Q9NRD8 1548 aa15.86■□□□□ 0.13
LDLR-214ENST00000560628 FAM135AQ9P2D6 1515 aa15.86■□□□□ 0.13
LDLR-214ENST00000560628 DNMT1P26358 1616 aaKnown RBP15.86■□□□□ 0.13
LDLR-214ENST00000560628 LTBP4Q8N2S1 1624 aa15.86■□□□□ 0.13
LDLR-214ENST00000560628 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.86■□□□□ 0.13
LDLR-214ENST00000560628 ABCC3O15438 1527 aa15.85■□□□□ 0.13
LDLR-214ENST00000560628 ANKLE2Q86XL3 938 aa15.85■□□□□ 0.13
LDLR-214ENST00000560628 RNF17Q9BXT8 1623 aaKnown RBP15.84■□□□□ 0.13
LDLR-214ENST00000560628 ANKRD30AQ9BXX3 1397 aa15.83■□□□□ 0.12
LDLR-214ENST00000560628 SHANK2Q9UPX8 1470 aa15.83■□□□□ 0.12
LDLR-214ENST00000560628 PPARGC1BQ86YN6 1023 aaKnown RBP15.82■□□□□ 0.12
LDLR-214ENST00000560628 NLRP1Q9C000 1473 aa15.82■□□□□ 0.12
LDLR-214ENST00000560628 MROH1Q8NDA8 1641 aa15.81■□□□□ 0.12
LDLR-214ENST00000560628 EIF2AK4Q9P2K8 1649 aaKnown RBP15.81■□□□□ 0.12
LDLR-214ENST00000560628 ERBINQ96RT1 1412 aa15.8■□□□□ 0.12
LDLR-214ENST00000560628 UGGT1Q9NYU2 1555 aa15.79■□□□□ 0.12
LDLR-214ENST00000560628 ERVK-7P63135 1459 aa15.79■□□□□ 0.12
LDLR-214ENST00000560628 CFAP65Q6ZU64 1925 aaKnown RBP15.79■□□□□ 0.12
LDLR-214ENST00000560628 KANK1Q14678 1352 aa15.78■□□□□ 0.12
LDLR-214ENST00000560628 UBAP1LF5GYI3 381 aa15.78■□□□□ 0.12
LDLR-214ENST00000560628 CROCC2H7BZ55 1655 aa15.78■□□□□ 0.12
LDLR-214ENST00000560628 CEP152O94986 1710 aa15.77■□□□□ 0.12
LDLR-214ENST00000560628 SPATA31D1Q6ZQQ2 1576 aa15.77■□□□□ 0.11
LDLR-214ENST00000560628 ZC3H13Q5T200 1668 aaKnown RBP15.76■□□□□ 0.11
LDLR-214ENST00000560628 NPHP4O75161 1426 aaPredicted RBP15.75■□□□□ 0.11
LDLR-214ENST00000560628 NEURL4Q96JN8 1562 aa15.75■□□□□ 0.11
LDLR-214ENST00000560628 IQSEC2Q5JU85 1478 aa15.74■□□□□ 0.11
LDLR-214ENST00000560628 ARHGAP31Q2M1Z3 1444 aa15.74■□□□□ 0.11
LDLR-214ENST00000560628 PRDM15P57071 1507 aaPredicted RBP15.73■□□□□ 0.11
LDLR-214ENST00000560628 ITGAEP38570 1179 aa15.73■□□□□ 0.11
LDLR-214ENST00000560628 TXNDC2Q86VQ3 553 aa15.73■□□□□ 0.11
LDLR-214ENST00000560628 STAG3Q9UJ98 1225 aa15.73■□□□□ 0.11
LDLR-214ENST00000560628 LTKP29376 864 aa15.72■□□□□ 0.11
LDLR-214ENST00000560628 IDI1Q13907 227 aa15.71■□□□□ 0.11
LDLR-214ENST00000560628 POLR1AO95602 1720 aaPredicted RBP15.71■□□□□ 0.1
LDLR-214ENST00000560628 MED14O60244 1454 aa15.71■□□□□ 0.1
LDLR-214ENST00000560628 ADGRL2O95490 1459 aa15.71■□□□□ 0.1
LDLR-214ENST00000560628 ANKRD50Q9ULJ7 1429 aa15.7■□□□□ 0.1
LDLR-214ENST00000560628 PIP4K2BP78356 416 aa15.69■□□□□ 0.1
LDLR-214ENST00000560628 EID1Q9Y6B2 187 aa15.69■□□□□ 0.1
LDLR-214ENST00000560628 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
LDLR-214ENST00000560628 DEPDC5O75140 1603 aa15.68■□□□□ 0.1
LDLR-214ENST00000560628 VWDEQ8N2E2 1590 aa15.66■□□□□ 0.1
LDLR-214ENST00000560628 DISP3Q9P2K9 1392 aa15.66■□□□□ 0.1
LDLR-214ENST00000560628 TOM1O60784 492 aa15.66■□□□□ 0.1
LDLR-214ENST00000560628 LMTK2Q8IWU2 1503 aa15.66■□□□□ 0.1
LDLR-214ENST00000560628 UBR1Q8IWV7 1749 aa15.65■□□□□ 0.1
LDLR-214ENST00000560628 SCAF11Q99590 1463 aaKnown RBP15.65■□□□□ 0.1
LDLR-214ENST00000560628 CPS1P31327 1500 aa15.65■□□□□ 0.1
LDLR-214ENST00000560628 TMEM2Q9UHN6 1383 aa15.64■□□□□ 0.09
LDLR-214ENST00000560628 IQGAP1P46940 1657 aa15.64■□□□□ 0.09
LDLR-214ENST00000560628 ARHGAP23Q9P227 1491 aa15.64■□□□□ 0.09
LDLR-214ENST00000560628 NOS1P29475 1434 aa15.63■□□□□ 0.09
LDLR-214ENST00000560628 SENP3Q9H4L4 574 aaPredicted RBP15.63■□□□□ 0.09
LDLR-214ENST00000560628 SLC52A1Q9NWF4 448 aa15.63■□□□□ 0.09
LDLR-214ENST00000560628 PIK3C2BO00750 1634 aa15.62■□□□□ 0.09
LDLR-214ENST00000560628 SLIT1O75093 1534 aa15.62■□□□□ 0.09
LDLR-214ENST00000560628 ROCK1Q13464 1354 aa15.62■□□□□ 0.09
LDLR-214ENST00000560628 HSPA1LP34931 641 aa15.61■□□□□ 0.09
LDLR-214ENST00000560628 SLC26A8Q96RN1 970 aa15.61■□□□□ 0.09
LDLR-214ENST00000560628 EFCAB6Q5THR3 1501 aa15.6■□□□□ 0.09
LDLR-214ENST00000560628 CHGAP10645 457 aaKnown RBP15.6■□□□□ 0.09
LDLR-214ENST00000560628 BCANQ96GW7 911 aa15.6■□□□□ 0.09
LDLR-214ENST00000560628 SYNMO15061 1565 aa15.6■□□□□ 0.09
LDLR-214ENST00000560628 LRRC7Q96NW7 1537 aa15.58■□□□□ 0.09
LDLR-214ENST00000560628 ILDR2Q71H61 639 aa15.58■□□□□ 0.08
LDLR-214ENST00000560628 NUP155O75694 1391 aa15.58■□□□□ 0.08
LDLR-214ENST00000560628 STRCP1A6NGW2 1772 aa15.57■□□□□ 0.08
LDLR-214ENST00000560628 RPRD2Q5VT52 1461 aaKnown RBP15.56■□□□□ 0.08
LDLR-214ENST00000560628 RBM33Q96EV2 1170 aaKnown RBP15.55■□□□□ 0.08
LDLR-214ENST00000560628 PPP1R15AO75807 674 aaPredicted RBP15.54■□□□□ 0.08
LDLR-214ENST00000560628 KCNA6P17658 529 aa15.54■□□□□ 0.08
LDLR-214ENST00000560628 NUTM2DQ5VT03 806 aaPredicted RBP15.54■□□□□ 0.08
LDLR-214ENST00000560628 ADGRB3O60242 1522 aa15.53■□□□□ 0.08
LDLR-214ENST00000560628 HDGFP51858 240 aaKnown RBP15.53■□□□□ 0.08
LDLR-214ENST00000560628 PROSER2Q86WR7 435 aaPredicted RBP15.53■□□□□ 0.08
LDLR-214ENST00000560628 TET3O43151 1660 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms