RNA–Protein interactions for RNA: ENST00000556607.1

SPTLC2-205, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 3

Gene SPTLC2, Length 460 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-205ENST00000556607 NCOA1Q15788 1441 aa16.51■□□□□ 0.23
SPTLC2-205ENST00000556607 MAST1Q9Y2H9 1570 aa16.51■□□□□ 0.23
SPTLC2-205ENST00000556607 NCKAP5LQ9HCH0 1330 aa16.5■□□□□ 0.23
SPTLC2-205ENST00000556607 PTPN23Q9H3S7 1636 aa16.5■□□□□ 0.23
SPTLC2-205ENST00000556607 PTPRTO14522 1441 aa16.5■□□□□ 0.23
SPTLC2-205ENST00000556607 CEP170BQ9Y4F5 1589 aaPredicted RBP16.5■□□□□ 0.23
SPTLC2-205ENST00000556607 FBXO31Q5XUX0 539 aaPredicted RBP16.48■□□□□ 0.23
SPTLC2-205ENST00000556607 TNRQ92752 1358 aa16.46■□□□□ 0.23
SPTLC2-205ENST00000556607 CROCC2H7BZ55 1655 aa16.46■□□□□ 0.23
SPTLC2-205ENST00000556607 FAM135AQ9P2D6 1515 aa16.45■□□□□ 0.22
SPTLC2-205ENST00000556607 EIF2AK4Q9P2K8 1649 aaKnown RBP16.45■□□□□ 0.22
SPTLC2-205ENST00000556607 PZPP20742 1482 aa16.45■□□□□ 0.22
SPTLC2-205ENST00000556607 A2ML1A8K2U0 1454 aa16.44■□□□□ 0.22
SPTLC2-205ENST00000556607 PKD2Q13563 968 aa16.44■□□□□ 0.22
SPTLC2-205ENST00000556607 RRP7BPQ9NSQ0 103 aa16.44■□□□□ 0.22
SPTLC2-205ENST00000556607 CFAP65Q6ZU64 1925 aaKnown RBP16.44■□□□□ 0.22
SPTLC2-205ENST00000556607 DNMT1P26358 1616 aaKnown RBP16.44■□□□□ 0.22
SPTLC2-205ENST00000556607 ZC3H13Q5T200 1668 aaKnown RBP16.43■□□□□ 0.22
SPTLC2-205ENST00000556607 CEP152O94986 1710 aa16.43■□□□□ 0.22
SPTLC2-205ENST00000556607 RNF17Q9BXT8 1623 aaKnown RBP16.43■□□□□ 0.22
SPTLC2-205ENST00000556607 DUOX2Q9NRD8 1548 aa16.43■□□□□ 0.22
SPTLC2-205ENST00000556607 PLA2R1Q13018 1463 aa16.42■□□□□ 0.22
SPTLC2-205ENST00000556607 CHIC2Q9UKJ5 165 aa16.42■□□□□ 0.22
SPTLC2-205ENST00000556607 FGD6Q6ZV73 1430 aa16.42■□□□□ 0.22
SPTLC2-205ENST00000556607 ABCC5O15440 1437 aa16.41■□□□□ 0.22
SPTLC2-205ENST00000556607 DAPK1P53355 1430 aa16.41■□□□□ 0.22
SPTLC2-205ENST00000556607 KIF15Q9NS87 1388 aa16.4■□□□□ 0.22
SPTLC2-205ENST00000556607 POLR1AO95602 1720 aaPredicted RBP16.4■□□□□ 0.22
SPTLC2-205ENST00000556607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
SPTLC2-205ENST00000556607 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
SPTLC2-205ENST00000556607 SHANK2Q9UPX8 1470 aa16.39■□□□□ 0.21
SPTLC2-205ENST00000556607 ABCC3O15438 1527 aa16.39■□□□□ 0.21
SPTLC2-205ENST00000556607 TCOF1Q13428 1488 aaKnown RBP16.38■□□□□ 0.21
SPTLC2-205ENST00000556607 ZNF335Q9H4Z2 1342 aaPredicted RBP16.38■□□□□ 0.21
SPTLC2-205ENST00000556607 LTBP4Q8N2S1 1624 aa16.37■□□□□ 0.21
SPTLC2-205ENST00000556607 THEMISQ8N1K5 641 aaPredicted RBP16.37■□□□□ 0.21
SPTLC2-205ENST00000556607 UGGT1Q9NYU2 1555 aa16.37■□□□□ 0.21
SPTLC2-205ENST00000556607 NLRP1Q9C000 1473 aa16.36■□□□□ 0.21
SPTLC2-205ENST00000556607 MROH1Q8NDA8 1641 aa16.36■□□□□ 0.21
SPTLC2-205ENST00000556607 ANKRD30AQ9BXX3 1397 aa16.36■□□□□ 0.21
SPTLC2-205ENST00000556607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.36■□□□□ 0.21
SPTLC2-205ENST00000556607 ERBINQ96RT1 1412 aa16.36■□□□□ 0.21
SPTLC2-205ENST00000556607 ANKLE2Q86XL3 938 aa16.35■□□□□ 0.21
SPTLC2-205ENST00000556607 KANK1Q14678 1352 aa16.34■□□□□ 0.21
SPTLC2-205ENST00000556607 SPATA31D1Q6ZQQ2 1576 aa16.33■□□□□ 0.2
SPTLC2-205ENST00000556607 ERVK-7P63135 1459 aa16.32■□□□□ 0.2
SPTLC2-205ENST00000556607 PRDM15P57071 1507 aaPredicted RBP16.31■□□□□ 0.2
SPTLC2-205ENST00000556607 IQSEC2Q5JU85 1478 aa16.3■□□□□ 0.2
SPTLC2-205ENST00000556607 NEURL4Q96JN8 1562 aa16.3■□□□□ 0.2
SPTLC2-205ENST00000556607 PPARGC1BQ86YN6 1023 aaKnown RBP16.29■□□□□ 0.2
SPTLC2-205ENST00000556607 DEPDC5O75140 1603 aa16.29■□□□□ 0.2
SPTLC2-205ENST00000556607 UBAP1LF5GYI3 381 aa16.28■□□□□ 0.2
SPTLC2-205ENST00000556607 STAG3Q9UJ98 1225 aa16.28■□□□□ 0.2
SPTLC2-205ENST00000556607 UBR1Q8IWV7 1749 aa16.27■□□□□ 0.19
SPTLC2-205ENST00000556607 IQGAP1P46940 1657 aa16.27■□□□□ 0.19
SPTLC2-205ENST00000556607 NPHP4O75161 1426 aaPredicted RBP16.27■□□□□ 0.19
SPTLC2-205ENST00000556607 ARHGAP31Q2M1Z3 1444 aa16.25■□□□□ 0.19
SPTLC2-205ENST00000556607 SCAF1Q9H7N4 1312 aaKnown RBP16.24■□□□□ 0.19
SPTLC2-205ENST00000556607 ADGRL2O95490 1459 aa16.24■□□□□ 0.19
SPTLC2-205ENST00000556607 ITGAEP38570 1179 aa16.24■□□□□ 0.19
SPTLC2-205ENST00000556607 PIK3C2BO00750 1634 aa16.23■□□□□ 0.19
SPTLC2-205ENST00000556607 ANKRD50Q9ULJ7 1429 aa16.22■□□□□ 0.19
SPTLC2-205ENST00000556607 CPS1P31327 1500 aa16.22■□□□□ 0.19
SPTLC2-205ENST00000556607 MED14O60244 1454 aa16.22■□□□□ 0.19
SPTLC2-205ENST00000556607 TXNDC2Q86VQ3 553 aa16.21■□□□□ 0.19
SPTLC2-205ENST00000556607 EID1Q9Y6B2 187 aa16.21■□□□□ 0.19
SPTLC2-205ENST00000556607 LMTK2Q8IWU2 1503 aa16.19■□□□□ 0.18
SPTLC2-205ENST00000556607 VWDEQ8N2E2 1590 aa16.19■□□□□ 0.18
SPTLC2-205ENST00000556607 PIP4K2BP78356 416 aa16.19■□□□□ 0.18
SPTLC2-205ENST00000556607 SCAF11Q99590 1463 aaKnown RBP16.18■□□□□ 0.18
SPTLC2-205ENST00000556607 TOM1O60784 492 aa16.18■□□□□ 0.18
SPTLC2-205ENST00000556607 EFCAB6Q5THR3 1501 aa16.18■□□□□ 0.18
SPTLC2-205ENST00000556607 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
SPTLC2-205ENST00000556607 LTKP29376 864 aa16.17■□□□□ 0.18
SPTLC2-205ENST00000556607 IDI1Q13907 227 aa16.17■□□□□ 0.18
SPTLC2-205ENST00000556607 SLIT1O75093 1534 aa16.15■□□□□ 0.18
SPTLC2-205ENST00000556607 SYNMO15061 1565 aa16.15■□□□□ 0.18
SPTLC2-205ENST00000556607 BCANQ96GW7 911 aa16.15■□□□□ 0.18
SPTLC2-205ENST00000556607 STRCP1A6NGW2 1772 aa16.15■□□□□ 0.18
SPTLC2-205ENST00000556607 TET3O43151 1660 aa16.14■□□□□ 0.18
SPTLC2-205ENST00000556607 ARHGAP23Q9P227 1491 aa16.14■□□□□ 0.17
SPTLC2-205ENST00000556607 KDM5AP29375 1690 aaKnown RBP16.14■□□□□ 0.17
SPTLC2-205ENST00000556607 GCC2Q8IWJ2 1684 aa16.14■□□□□ 0.17
SPTLC2-205ENST00000556607 TMEM2Q9UHN6 1383 aa16.13■□□□□ 0.17
SPTLC2-205ENST00000556607 CHGAP10645 457 aaKnown RBP16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 SENP3Q9H4L4 574 aaPredicted RBP16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 SLC52A1Q9NWF4 448 aa16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 UNC13BO14795 1591 aa16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 MYO5BQ9ULV0 1848 aa16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 ROCK1Q13464 1354 aa16.12■□□□□ 0.17
SPTLC2-205ENST00000556607 NOS1P29475 1434 aa16.11■□□□□ 0.17
SPTLC2-205ENST00000556607 RPRD2Q5VT52 1461 aaKnown RBP16.1■□□□□ 0.17
SPTLC2-205ENST00000556607 ADGRB3O60242 1522 aa16.1■□□□□ 0.17
SPTLC2-205ENST00000556607 LRRC7Q96NW7 1537 aa16.09■□□□□ 0.17
SPTLC2-205ENST00000556607 E9PCH4 1651 aa16.08■□□□□ 0.17
SPTLC2-205ENST00000556607 PPP1R15AO75807 674 aaPredicted RBP16.08■□□□□ 0.16
SPTLC2-205ENST00000556607 SLC26A8Q96RN1 970 aa16.08■□□□□ 0.16
SPTLC2-205ENST00000556607 NUP155O75694 1391 aa16.08■□□□□ 0.16
SPTLC2-205ENST00000556607 IQGAP3Q86VI3 1631 aa16.07■□□□□ 0.16
SPTLC2-205ENST00000556607 HSPA1LP34931 641 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms