RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 INO80Q9ULG1 1556 aaPredicted RBP18.93■□□□□ 0.62
SRP54-203ENST00000553544 RTEL1-TNFRSF6BF6WH68 1400 aa18.93■□□□□ 0.62
SRP54-203ENST00000553544 RSPH4AQ5TD94 716 aa18.93■□□□□ 0.62
SRP54-203ENST00000553544 TNRQ92752 1358 aa18.93■□□□□ 0.62
SRP54-203ENST00000553544 MBD5Q9P267 1494 aa18.9■□□□□ 0.62
SRP54-203ENST00000553544 SHANK2Q9UPX8 1470 aa18.9■□□□□ 0.62
SRP54-203ENST00000553544 DNMT1P26358 1616 aaKnown RBP18.89■□□□□ 0.62
SRP54-203ENST00000553544 CEP162Q5TB80 1403 aa18.89■□□□□ 0.61
SRP54-203ENST00000553544 CPS1P31327 1500 aa18.89■□□□□ 0.61
SRP54-203ENST00000553544 ADGBQ8N7X0 1667 aa18.88■□□□□ 0.61
SRP54-203ENST00000553544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.87■□□□□ 0.61
SRP54-203ENST00000553544 MIA2Q96PC5 1412 aa18.86■□□□□ 0.61
SRP54-203ENST00000553544 PHF23Q9BUL5 403 aaPredicted RBP18.86■□□□□ 0.61
SRP54-203ENST00000553544 TSPY4P0CV99 314 aa18.85■□□□□ 0.61
SRP54-203ENST00000553544 TSPY10P0CW01 314 aa18.85■□□□□ 0.61
SRP54-203ENST00000553544 LOC105371045A0A1W2PR82 267 aa18.84■□□□□ 0.61
SRP54-203ENST00000553544 PZPP20742 1482 aa18.84■□□□□ 0.61
SRP54-203ENST00000553544 NPHP4O75161 1426 aaPredicted RBP18.81■□□□□ 0.6
SRP54-203ENST00000553544 NLRP1Q9C000 1473 aa18.8■□□□□ 0.6
SRP54-203ENST00000553544 MED1Q15648 1581 aaPredicted RBP18.8■□□□□ 0.6
SRP54-203ENST00000553544 FAM135AQ9P2D6 1515 aa18.79■□□□□ 0.6
SRP54-203ENST00000553544 TIAM1Q13009 1591 aa18.79■□□□□ 0.6
SRP54-203ENST00000553544 NEURL4Q96JN8 1562 aa18.79■□□□□ 0.6
SRP54-203ENST00000553544 KDM5DQ9BY66 1539 aa18.79■□□□□ 0.6
SRP54-203ENST00000553544 MED14O60244 1454 aa18.77■□□□□ 0.6
SRP54-203ENST00000553544 CCDC141Q6ZP82 1450 aa18.77■□□□□ 0.6
SRP54-203ENST00000553544 UGGT1Q9NYU2 1555 aa18.76■□□□□ 0.59
SRP54-203ENST00000553544 EHBP1L1Q8N3D4 1523 aa18.76■□□□□ 0.59
SRP54-203ENST00000553544 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
SRP54-203ENST00000553544 POLR1AO95602 1720 aaPredicted RBP18.75■□□□□ 0.59
SRP54-203ENST00000553544 VWDEQ8N2E2 1590 aa18.75■□□□□ 0.59
SRP54-203ENST00000553544 CAMSAP2Q08AD1 1489 aa18.71■□□□□ 0.59
SRP54-203ENST00000553544 DEPDC5O75140 1603 aa18.71■□□□□ 0.59
SRP54-203ENST00000553544 NCOA2Q15596 1464 aa18.71■□□□□ 0.59
SRP54-203ENST00000553544 LRRC7Q96NW7 1537 aa18.69■□□□□ 0.58
SRP54-203ENST00000553544 VPS8Q8N3P4 1428 aa18.68■□□□□ 0.58
SRP54-203ENST00000553544 TXNDC2Q86VQ3 553 aa18.68■□□□□ 0.58
SRP54-203ENST00000553544 ALKQ9UM73 1620 aa18.67■□□□□ 0.58
SRP54-203ENST00000553544 EID1Q9Y6B2 187 aa18.66■□□□□ 0.58
SRP54-203ENST00000553544 LTKP29376 864 aa18.65■□□□□ 0.58
SRP54-203ENST00000553544 IQGAP1P46940 1657 aa18.64■□□□□ 0.57
SRP54-203ENST00000553544 ARHGEF5Q12774 1597 aa18.64■□□□□ 0.57
SRP54-203ENST00000553544 RGS17Q9UGC6 210 aaPredicted RBP18.63■□□□□ 0.57
SRP54-203ENST00000553544 ABCC3O15438 1527 aa18.63■□□□□ 0.57
SRP54-203ENST00000553544 ERVK-7P63135 1459 aa18.62■□□□□ 0.57
SRP54-203ENST00000553544 SCAF11Q99590 1463 aaKnown RBP18.6■□□□□ 0.57
SRP54-203ENST00000553544 STAG3Q9UJ98 1225 aa18.59■□□□□ 0.57
SRP54-203ENST00000553544 MAP3K1Q13233 1512 aa18.59■□□□□ 0.57
SRP54-203ENST00000553544 STRCP1A6NGW2 1772 aa18.58■□□□□ 0.56
SRP54-203ENST00000553544 LRRC9Q6ZRR7 1453 aa18.57■□□□□ 0.56
SRP54-203ENST00000553544 RNF17Q9BXT8 1623 aaKnown RBP18.56■□□□□ 0.56
SRP54-203ENST00000553544 FAM135BQ49AJ0 1406 aa18.56■□□□□ 0.56
SRP54-203ENST00000553544 SYNMO15061 1565 aa18.55■□□□□ 0.56
SRP54-203ENST00000553544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.55■□□□□ 0.56
SRP54-203ENST00000553544 ZC3H13Q5T200 1668 aaKnown RBP18.54■□□□□ 0.56
SRP54-203ENST00000553544 ARHGAP23Q9P227 1491 aa18.54■□□□□ 0.56
SRP54-203ENST00000553544 KCNA6P17658 529 aa18.54■□□□□ 0.56
SRP54-203ENST00000553544 RRP7BPQ9NSQ0 103 aa18.54■□□□□ 0.56
SRP54-203ENST00000553544 ARHGAP31Q2M1Z3 1444 aa18.54■□□□□ 0.56
SRP54-203ENST00000553544 MAST1Q9Y2H9 1570 aa18.54■□□□□ 0.56
SRP54-203ENST00000553544 KANK4Q5T7N3 995 aaPredicted RBP18.53■□□□□ 0.56
SRP54-203ENST00000553544 MYOM3Q5VTT5 1437 aa18.53■□□□□ 0.56
SRP54-203ENST00000553544 PROSER2Q86WR7 435 aaPredicted RBP18.53■□□□□ 0.56
SRP54-203ENST00000553544 SLIT1O75093 1534 aa18.53■□□□□ 0.56
SRP54-203ENST00000553544 CFAP65Q6ZU64 1925 aaKnown RBP18.53■□□□□ 0.56
SRP54-203ENST00000553544 POTEAQ6S8J7 498 aa18.52■□□□□ 0.56
SRP54-203ENST00000553544 TMEM2Q9UHN6 1383 aa18.52■□□□□ 0.55
SRP54-203ENST00000553544 IDI1Q13907 227 aa18.51■□□□□ 0.55
SRP54-203ENST00000553544 EIF2AK4Q9P2K8 1649 aaKnown RBP18.51■□□□□ 0.55
SRP54-203ENST00000553544 UBR1Q8IWV7 1749 aa18.51■□□□□ 0.55
SRP54-203ENST00000553544 DUOX2Q9NRD8 1548 aa18.5■□□□□ 0.55
SRP54-203ENST00000553544 TMEM94Q12767 1356 aa18.5■□□□□ 0.55
SRP54-203ENST00000553544 SLC26A8Q96RN1 970 aa18.49■□□□□ 0.55
SRP54-203ENST00000553544 KANK1Q14678 1352 aa18.49■□□□□ 0.55
SRP54-203ENST00000553544 KIF15Q9NS87 1388 aa18.49■□□□□ 0.55
SRP54-203ENST00000553544 MROH1Q8NDA8 1641 aa18.48■□□□□ 0.55
SRP54-203ENST00000553544 RBM33Q96EV2 1170 aaKnown RBP18.47■□□□□ 0.55
SRP54-203ENST00000553544 BCANQ96GW7 911 aa18.47■□□□□ 0.55
SRP54-203ENST00000553544 SLAIN2Q9P270 581 aa18.45■□□□□ 0.54
SRP54-203ENST00000553544 CEP152O94986 1710 aa18.44■□□□□ 0.54
SRP54-203ENST00000553544 ERBINQ96RT1 1412 aa18.44■□□□□ 0.54
SRP54-203ENST00000553544 SLC52A1Q9NWF4 448 aa18.43■□□□□ 0.54
SRP54-203ENST00000553544 ABCC5O15440 1437 aa18.42■□□□□ 0.54
SRP54-203ENST00000553544 HDGFP51858 240 aaKnown RBP18.41■□□□□ 0.54
SRP54-203ENST00000553544 XIRP1Q702N8 1843 aaKnown RBP18.4■□□□□ 0.54
SRP54-203ENST00000553544 APLP2Q06481 763 aa18.4■□□□□ 0.54
SRP54-203ENST00000553544 CHIC2Q9UKJ5 165 aa18.4■□□□□ 0.54
SRP54-203ENST00000553544 MSH6P52701 1360 aa18.4■□□□□ 0.54
SRP54-203ENST00000553544 PRDM15P57071 1507 aaPredicted RBP18.39■□□□□ 0.54
SRP54-203ENST00000553544 EFCAB6Q5THR3 1501 aa18.39■□□□□ 0.54
SRP54-203ENST00000553544 PIK3C2BO00750 1634 aa18.38■□□□□ 0.53
SRP54-203ENST00000553544 ANKRD30AQ9BXX3 1397 aa18.37■□□□□ 0.53
SRP54-203ENST00000553544 TET3O43151 1660 aa18.37■□□□□ 0.53
SRP54-203ENST00000553544 JCADQ9P266 1359 aa18.36■□□□□ 0.53
SRP54-203ENST00000553544 DAPK1P53355 1430 aa18.34■□□□□ 0.53
SRP54-203ENST00000553544 PPP1R15AO75807 674 aaPredicted RBP18.34■□□□□ 0.53
SRP54-203ENST00000553544 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
SRP54-203ENST00000553544 ROBO1Q9Y6N7 1651 aa18.34■□□□□ 0.53
SRP54-203ENST00000553544 LMTK2Q8IWU2 1503 aa18.33■□□□□ 0.52
SRP54-203ENST00000553544 NKTRP30414 1462 aaKnown RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms