RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 NISCHQ9Y2I1 1504 aa29.65■■■□□ 2.34
SRP54-203ENST00000553544 ABCC9O60706 1549 aa27.14■■□□□ 1.94
SRP54-203ENST00000553544 CCDC180Q9P1Z9 1646 aa26.64■■□□□ 1.85
SRP54-203ENST00000553544 DNAJC5BQ9UF47 199 aa25.89■■□□□ 1.74
SRP54-203ENST00000553544 RB1CC1Q8TDY2 1594 aa25.63■■□□□ 1.69
SRP54-203ENST00000553544 DCAF8L2P0C7V8 631 aa25.42■■□□□ 1.66
SRP54-203ENST00000553544 NACADO15069 1562 aa25.39■■□□□ 1.65
SRP54-203ENST00000553544 PABPN1Q86U42 306 aaKnown RBP eCLIP25.33■■□□□ 1.65
SRP54-203ENST00000553544 MYO15BQ96JP2 1530 aa24.91■■□□□ 1.58
SRP54-203ENST00000553544 UNC13AQ9UPW8 1703 aa24.89■■□□□ 1.57
SRP54-203ENST00000553544 BICRAQ9NZM4 1560 aa24.85■■□□□ 1.57
SRP54-203ENST00000553544 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
SRP54-203ENST00000553544 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
SRP54-203ENST00000553544 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
SRP54-203ENST00000553544 CC2D2AQ9P2K1 1620 aa24.44■■□□□ 1.5
SRP54-203ENST00000553544 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
SRP54-203ENST00000553544 EIF4G1Q04637 1599 aaKnown RBP24.29■■□□□ 1.48
SRP54-203ENST00000553544 SCRIBQ14160 1630 aa24.29■■□□□ 1.48
SRP54-203ENST00000553544 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.45
SRP54-203ENST00000553544 CUX2O14529 1486 aa23.53■■□□□ 1.36
SRP54-203ENST00000553544 NCAPD3P42695 1498 aa23.49■■□□□ 1.35
SRP54-203ENST00000553544 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
SRP54-203ENST00000553544 ATAD2BQ9ULI0 1458 aa23.35■■□□□ 1.33
SRP54-203ENST00000553544 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
SRP54-203ENST00000553544 NESP48681 1621 aa23.19■■□□□ 1.3
SRP54-203ENST00000553544 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
SRP54-203ENST00000553544 SMARCA4P51532 1647 aa23.14■■□□□ 1.29
SRP54-203ENST00000553544 BAZ1BQ9UIG0 1483 aaKnown RBP23.09■■□□□ 1.29
SRP54-203ENST00000553544 BAZ1AQ9NRL2 1556 aaPredicted RBP23.02■■□□□ 1.28
SRP54-203ENST00000553544 PDS5BQ9NTI5 1447 aa22.95■■□□□ 1.26
SRP54-203ENST00000553544 LAMC3Q9Y6N6 1575 aa22.94■■□□□ 1.26
SRP54-203ENST00000553544 PEG3Q9GZU2 1588 aa22.93■■□□□ 1.26
SRP54-203ENST00000553544 THOC2Q8NI27 1593 aaKnown RBP22.91■■□□□ 1.26
SRP54-203ENST00000553544 TRIM41Q8WV44 630 aa22.87■■□□□ 1.25
SRP54-203ENST00000553544 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.25
SRP54-203ENST00000553544 CADPSQ9ULU8 1353 aa22.8■■□□□ 1.24
SRP54-203ENST00000553544 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
SRP54-203ENST00000553544 MRC2Q9UBG0 1479 aa22.68■■□□□ 1.22
SRP54-203ENST00000553544 WDR62O43379 1518 aa22.58■■□□□ 1.21
SRP54-203ENST00000553544 OSCARQ8IYS5 282 aa22.58■■□□□ 1.21
SRP54-203ENST00000553544 CEP164Q9UPV0 1460 aa22.52■■□□□ 1.2
SRP54-203ENST00000553544 WIZO95785 1651 aa22.49■■□□□ 1.19
SRP54-203ENST00000553544 FANCD2Q9BXW9 1451 aa22.48■■□□□ 1.19
SRP54-203ENST00000553544 CFTRP13569 1480 aa22.41■■□□□ 1.18
SRP54-203ENST00000553544 URB2Q14146 1524 aaKnown RBP22.28■■□□□ 1.16
SRP54-203ENST00000553544 RSF1Q96T23 1441 aaPredicted RBP22.28■■□□□ 1.16
SRP54-203ENST00000553544 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
SRP54-203ENST00000553544 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
SRP54-203ENST00000553544 ZNF608Q9ULD9 1512 aaPredicted RBP22.09■■□□□ 1.13
SRP54-203ENST00000553544 RIMBP3CA6NJZ7 1639 aa22.08■■□□□ 1.13
SRP54-203ENST00000553544 RIMBP3BA6NNM3 1639 aa22.08■■□□□ 1.13
SRP54-203ENST00000553544 RIMBP3Q9UFD9 1639 aa22.08■■□□□ 1.13
SRP54-203ENST00000553544 CYB5RLQ6IPT4 315 aa22.06■■□□□ 1.12
SRP54-203ENST00000553544 CCDC88BA6NC98 1476 aa22.03■■□□□ 1.12
SRP54-203ENST00000553544 ARHGEF11O15085 1522 aa22.01■■□□□ 1.11
SRP54-203ENST00000553544 TOPBP1Q92547 1522 aa21.99■■□□□ 1.11
SRP54-203ENST00000553544 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
SRP54-203ENST00000553544 TRHP20396 242 aaPredicted RBP21.95■■□□□ 1.1
SRP54-203ENST00000553544 FBLN2P98095 1184 aa21.94■■□□□ 1.1
SRP54-203ENST00000553544 PRDM2Q13029 1718 aa21.93■■□□□ 1.1
SRP54-203ENST00000553544 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.17e-7■■□□□ 14.1
SRP54-203ENST00000553544 EIF4G3O43432 1585 aaKnown RBP21.84■■□□□ 1.09
SRP54-203ENST00000553544 DNMBPQ6XZF7 1577 aa21.84■■□□□ 1.09
SRP54-203ENST00000553544 ARAP1Q96P48 1450 aa21.77■■□□□ 1.07
SRP54-203ENST00000553544 TARBP1Q13395 1621 aaKnown RBP21.77■■□□□ 1.07
SRP54-203ENST00000553544 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
SRP54-203ENST00000553544 POLA1P09884 1462 aaPredicted RBP21.74■■□□□ 1.07
SRP54-203ENST00000553544 SOGA1O94964 1423 aa21.73■■□□□ 1.07
SRP54-203ENST00000553544 CHD1O14646 1710 aa21.72■■□□□ 1.07
SRP54-203ENST00000553544 CHMP7Q8WUX9 453 aaPredicted RBP21.72■■□□□ 1.07
SRP54-203ENST00000553544 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
SRP54-203ENST00000553544 AEBP2Q6ZN18 517 aaPredicted RBP21.6■■□□□ 1.05
SRP54-203ENST00000553544 SNAPC4Q5SXM2 1469 aa21.59■■□□□ 1.05
SRP54-203ENST00000553544 FGD5Q6ZNL6 1462 aa21.55■■□□□ 1.04
SRP54-203ENST00000553544 MAGI1Q96QZ7 1491 aaPredicted RBP21.54■■□□□ 1.04
SRP54-203ENST00000553544 GRIN2BQ13224 1484 aa21.53■■□□□ 1.04
SRP54-203ENST00000553544 CLASP1Q7Z460 1538 aa21.53■■□□□ 1.04
SRP54-203ENST00000553544 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
SRP54-203ENST00000553544 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
SRP54-203ENST00000553544 SYNJ2O15056 1496 aa21.49■■□□□ 1.03
SRP54-203ENST00000553544 CUX1P39880 1505 aa21.45■■□□□ 1.02
SRP54-203ENST00000553544 GAPVD1Q14C86 1478 aa21.41■■□□□ 1.02
SRP54-203ENST00000553544 ABCA10Q8WWZ4 1543 aa21.29■■□□□ 1
SRP54-203ENST00000553544 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
SRP54-203ENST00000553544 GRIN2AQ12879 1464 aa21.22■□□□□ 0.99
SRP54-203ENST00000553544 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
SRP54-203ENST00000553544 ABCA5Q8WWZ7 1642 aa21.2■□□□□ 0.98
SRP54-203ENST00000553544 NUP160Q12769 1436 aa21.17■□□□□ 0.98
SRP54-203ENST00000553544 ERCC6L2Q5T890 1561 aa21.17■□□□□ 0.98
SRP54-203ENST00000553544 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
SRP54-203ENST00000553544 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
SRP54-203ENST00000553544 CEP170Q5SW79 1584 aa21.13■□□□□ 0.97
SRP54-203ENST00000553544 JPH4Q96JJ6 628 aa21.11■□□□□ 0.97
SRP54-203ENST00000553544 ADAMTS12P58397 1594 aa21.07■□□□□ 0.96
SRP54-203ENST00000553544 NPM1P06748 294 aaKnown RBP eCLIP21.07■□□□□ 0.96
SRP54-203ENST00000553544 PRG4Q92954 1404 aaPredicted RBP21.05■□□□□ 0.96
SRP54-203ENST00000553544 FAM69CQ0P6D2 419 aa21.04■□□□□ 0.96
SRP54-203ENST00000553544 SHROOM2Q13796 1616 aa21.03■□□□□ 0.96
SRP54-203ENST00000553544 ERICH3Q5RHP9 1530 aa21.01■□□□□ 0.95
SRP54-203ENST00000553544 TOP2BQ02880 1626 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms