RNA–Protein interactions for RNA: ENST00000552839.6

TMEM116-218, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-218ENST00000552839 RTEL1-TNFRSF6BF6WH68 1400 aa17.94■□□□□ 0.46
TMEM116-218ENST00000552839 DHX29Q7Z478 1369 aaKnown RBP17.93■□□□□ 0.46
TMEM116-218ENST00000552839 HSPA1LP34931 641 aa17.93■□□□□ 0.46
TMEM116-218ENST00000552839 PIP4K2BP78356 416 aa17.93■□□□□ 0.46
TMEM116-218ENST00000552839 SCAF1Q9H7N4 1312 aaKnown RBP17.93■□□□□ 0.46
TMEM116-218ENST00000552839 CPS1P31327 1500 aa17.92■□□□□ 0.46
TMEM116-218ENST00000552839 TNRQ92752 1358 aa17.91■□□□□ 0.46
TMEM116-218ENST00000552839 MED1Q15648 1581 aaPredicted RBP17.91■□□□□ 0.46
TMEM116-218ENST00000552839 SHANK2Q9UPX8 1470 aa17.91■□□□□ 0.46
TMEM116-218ENST00000552839 KIF3BO15066 747 aa17.9■□□□□ 0.46
TMEM116-218ENST00000552839 TOM1O60784 492 aa17.9■□□□□ 0.46
TMEM116-218ENST00000552839 PZPP20742 1482 aa17.89■□□□□ 0.45
TMEM116-218ENST00000552839 EHBP1L1Q8N3D4 1523 aa17.89■□□□□ 0.45
TMEM116-218ENST00000552839 KDM5DQ9BY66 1539 aa17.88■□□□□ 0.45
TMEM116-218ENST00000552839 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.88■□□□□ 0.45
TMEM116-218ENST00000552839 ANKLE2Q86XL3 938 aa17.86■□□□□ 0.45
TMEM116-218ENST00000552839 FAM135AQ9P2D6 1515 aa17.86■□□□□ 0.45
TMEM116-218ENST00000552839 VWDEQ8N2E2 1590 aa17.86■□□□□ 0.45
TMEM116-218ENST00000552839 WASHC2CQ9Y4E1 1318 aa17.85■□□□□ 0.45
TMEM116-218ENST00000552839 ALKQ9UM73 1620 aa17.84■□□□□ 0.45
TMEM116-218ENST00000552839 CCDC141Q6ZP82 1450 aa17.84■□□□□ 0.45
TMEM116-218ENST00000552839 MIA2Q96PC5 1412 aa17.84■□□□□ 0.45
TMEM116-218ENST00000552839 THEMISQ8N1K5 641 aaPredicted RBP17.84■□□□□ 0.45
TMEM116-218ENST00000552839 DEPDC5O75140 1603 aa17.83■□□□□ 0.45
TMEM116-218ENST00000552839 UGGT1Q9NYU2 1555 aa17.83■□□□□ 0.45
TMEM116-218ENST00000552839 MED14O60244 1454 aa17.82■□□□□ 0.44
TMEM116-218ENST00000552839 CAMSAP2Q08AD1 1489 aa17.82■□□□□ 0.44
TMEM116-218ENST00000552839 VPS8Q8N3P4 1428 aa17.82■□□□□ 0.44
TMEM116-218ENST00000552839 NLRP1Q9C000 1473 aa17.82■□□□□ 0.44
TMEM116-218ENST00000552839 NPHP4O75161 1426 aaPredicted RBP17.81■□□□□ 0.44
TMEM116-218ENST00000552839 STRCP1A6NGW2 1772 aa17.81■□□□□ 0.44
TMEM116-218ENST00000552839 RSPH4AQ5TD94 716 aa17.8■□□□□ 0.44
TMEM116-218ENST00000552839 IQGAP1P46940 1657 aa17.8■□□□□ 0.44
TMEM116-218ENST00000552839 NCOA2Q15596 1464 aa17.78■□□□□ 0.44
TMEM116-218ENST00000552839 APLP2Q06481 763 aa17.78■□□□□ 0.44
TMEM116-218ENST00000552839 CFAP65Q6ZU64 1925 aaKnown RBP17.76■□□□□ 0.43
TMEM116-218ENST00000552839 ARHGEF5Q12774 1597 aa17.76■□□□□ 0.43
TMEM116-218ENST00000552839 PHF23Q9BUL5 403 aaPredicted RBP17.76■□□□□ 0.43
TMEM116-218ENST00000552839 LRRC7Q96NW7 1537 aa17.75■□□□□ 0.43
TMEM116-218ENST00000552839 RNF17Q9BXT8 1623 aaKnown RBP17.74■□□□□ 0.43
TMEM116-218ENST00000552839 TSPY4P0CV99 314 aa17.73■□□□□ 0.43
TMEM116-218ENST00000552839 TSPY10P0CW01 314 aa17.73■□□□□ 0.43
TMEM116-218ENST00000552839 SENP3Q9H4L4 574 aaPredicted RBP17.73■□□□□ 0.43
TMEM116-218ENST00000552839 ZC3H13Q5T200 1668 aaKnown RBP17.73■□□□□ 0.43
TMEM116-218ENST00000552839 ABCC3O15438 1527 aa17.72■□□□□ 0.43
TMEM116-218ENST00000552839 SYNMO15061 1565 aa17.71■□□□□ 0.43
TMEM116-218ENST00000552839 ERVK-7P63135 1459 aa17.7■□□□□ 0.42
TMEM116-218ENST00000552839 CEP152O94986 1710 aa17.69■□□□□ 0.42
TMEM116-218ENST00000552839 UBR1Q8IWV7 1749 aa17.69■□□□□ 0.42
TMEM116-218ENST00000552839 MAST1Q9Y2H9 1570 aa17.69■□□□□ 0.42
TMEM116-218ENST00000552839 MROH1Q8NDA8 1641 aa17.69■□□□□ 0.42
TMEM116-218ENST00000552839 EIF2AK4Q9P2K8 1649 aaKnown RBP17.69■□□□□ 0.42
TMEM116-218ENST00000552839 XIRP1Q702N8 1843 aaKnown RBP17.68■□□□□ 0.42
TMEM116-218ENST00000552839 SCAF11Q99590 1463 aaKnown RBP17.64■□□□□ 0.41
TMEM116-218ENST00000552839 LTKP29376 864 aa17.64■□□□□ 0.41
TMEM116-218ENST00000552839 RGS17Q9UGC6 210 aaPredicted RBP17.63■□□□□ 0.41
TMEM116-218ENST00000552839 LRRC9Q6ZRR7 1453 aa17.62■□□□□ 0.41
TMEM116-218ENST00000552839 ARHGAP23Q9P227 1491 aa17.62■□□□□ 0.41
TMEM116-218ENST00000552839 SLIT1O75093 1534 aa17.62■□□□□ 0.41
TMEM116-218ENST00000552839 TXNDC2Q86VQ3 553 aa17.61■□□□□ 0.41
TMEM116-218ENST00000552839 DUOX2Q9NRD8 1548 aa17.59■□□□□ 0.41
TMEM116-218ENST00000552839 MAP3K1Q13233 1512 aa17.57■□□□□ 0.4
TMEM116-218ENST00000552839 ARHGAP31Q2M1Z3 1444 aa17.56■□□□□ 0.4
TMEM116-218ENST00000552839 KANK4Q5T7N3 995 aaPredicted RBP17.56■□□□□ 0.4
TMEM116-218ENST00000552839 PIK3C2BO00750 1634 aa17.56■□□□□ 0.4
TMEM116-218ENST00000552839 PRDM15P57071 1507 aaPredicted RBP17.56■□□□□ 0.4
TMEM116-218ENST00000552839 EID1Q9Y6B2 187 aa17.55■□□□□ 0.4
TMEM116-218ENST00000552839 MYOM3Q5VTT5 1437 aa17.55■□□□□ 0.4
TMEM116-218ENST00000552839 FAM135BQ49AJ0 1406 aa17.54■□□□□ 0.4
TMEM116-218ENST00000552839 TMEM2Q9UHN6 1383 aa17.53■□□□□ 0.4
TMEM116-218ENST00000552839 KIF15Q9NS87 1388 aa17.52■□□□□ 0.39
TMEM116-218ENST00000552839 CROCC2H7BZ55 1655 aa17.52■□□□□ 0.39
TMEM116-218ENST00000552839 POTEAQ6S8J7 498 aa17.51■□□□□ 0.39
TMEM116-218ENST00000552839 TMEM94Q12767 1356 aa17.51■□□□□ 0.39
TMEM116-218ENST00000552839 ERBINQ96RT1 1412 aa17.5■□□□□ 0.39
TMEM116-218ENST00000552839 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.5■□□□□ 0.39
TMEM116-218ENST00000552839 RRP7BPQ9NSQ0 103 aa17.5■□□□□ 0.39
TMEM116-218ENST00000552839 KDM5AP29375 1690 aaKnown RBP17.5■□□□□ 0.39
TMEM116-218ENST00000552839 ROBO1Q9Y6N7 1651 aa17.5■□□□□ 0.39
TMEM116-218ENST00000552839 STAG3Q9UJ98 1225 aa17.49■□□□□ 0.39
TMEM116-218ENST00000552839 ABCC5O15440 1437 aa17.48■□□□□ 0.39
TMEM116-218ENST00000552839 EFCAB6Q5THR3 1501 aa17.48■□□□□ 0.39
TMEM116-218ENST00000552839 KCNA6P17658 529 aa17.48■□□□□ 0.39
TMEM116-218ENST00000552839 IDI1Q13907 227 aa17.48■□□□□ 0.39
TMEM116-218ENST00000552839 TET3O43151 1660 aa17.48■□□□□ 0.39
TMEM116-218ENST00000552839 RBM33Q96EV2 1170 aaKnown RBP17.47■□□□□ 0.39
TMEM116-218ENST00000552839 PROSER2Q86WR7 435 aaPredicted RBP17.46■□□□□ 0.39
TMEM116-218ENST00000552839 SLC26A8Q96RN1 970 aa17.46■□□□□ 0.39
TMEM116-218ENST00000552839 PPARGC1BQ86YN6 1023 aaKnown RBP17.45■□□□□ 0.38
TMEM116-218ENST00000552839 PTPN23Q9H3S7 1636 aa17.45■□□□□ 0.38
TMEM116-218ENST00000552839 KANK1Q14678 1352 aa17.44■□□□□ 0.38
TMEM116-218ENST00000552839 LMTK2Q8IWU2 1503 aa17.43■□□□□ 0.38
TMEM116-218ENST00000552839 NWD1Q149M9 1564 aa17.42■□□□□ 0.38
TMEM116-218ENST00000552839 DAPK1P53355 1430 aa17.42■□□□□ 0.38
TMEM116-218ENST00000552839 SETD1AO15047 1707 aaKnown RBP17.41■□□□□ 0.38
TMEM116-218ENST00000552839 PHLPP1O60346 1717 aa17.41■□□□□ 0.38
TMEM116-218ENST00000552839 NOS1P29475 1434 aa17.4■□□□□ 0.38
TMEM116-218ENST00000552839 NKTRP30414 1462 aaKnown RBP17.4■□□□□ 0.38
TMEM116-218ENST00000552839 ADGRB3O60242 1522 aa17.4■□□□□ 0.38
TMEM116-218ENST00000552839 MYO5BQ9ULV0 1848 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms