RNA–Protein interactions for RNA: ENST00000552839.6

TMEM116-218, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-218ENST00000552839 NISCHQ9Y2I1 1504 aa28.23■■■□□ 2.11
TMEM116-218ENST00000552839 ABCC9O60706 1549 aa25.79■■□□□ 1.72
TMEM116-218ENST00000552839 CCDC180Q9P1Z9 1646 aa25.48■■□□□ 1.67
TMEM116-218ENST00000552839 DNAJC5BQ9UF47 199 aa24.53■■□□□ 1.52
TMEM116-218ENST00000552839 RB1CC1Q8TDY2 1594 aa24.39■■□□□ 1.5
TMEM116-218ENST00000552839 NACADO15069 1562 aa24.15■■□□□ 1.46
TMEM116-218ENST00000552839 DCAF8L2P0C7V8 631 aa23.97■■□□□ 1.43
TMEM116-218ENST00000552839 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
TMEM116-218ENST00000552839 UNC13AQ9UPW8 1703 aa23.93■■□□□ 1.42
TMEM116-218ENST00000552839 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
TMEM116-218ENST00000552839 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
TMEM116-218ENST00000552839 ZCCHC6Q5VYS8 1495 aaKnown RBP23.31■■□□□ 1.32
TMEM116-218ENST00000552839 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
TMEM116-218ENST00000552839 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
TMEM116-218ENST00000552839 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
TMEM116-218ENST00000552839 CECR2Q9BXF3 1484 aa23.25■■□□□ 1.31
TMEM116-218ENST00000552839 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
TMEM116-218ENST00000552839 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
TMEM116-218ENST00000552839 DNAJC5Q9H3Z4 198 aa22.73■■□□□ 1.23
TMEM116-218ENST00000552839 CUX2O14529 1486 aa22.34■■□□□ 1.17
TMEM116-218ENST00000552839 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
TMEM116-218ENST00000552839 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
TMEM116-218ENST00000552839 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
TMEM116-218ENST00000552839 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
TMEM116-218ENST00000552839 HMGXB3Q12766 1538 aa22.1■■□□□ 1.13
TMEM116-218ENST00000552839 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
TMEM116-218ENST00000552839 NESP48681 1621 aa22.09■■□□□ 1.13
TMEM116-218ENST00000552839 BAZ1BQ9UIG0 1483 aaKnown RBP21.95■■□□□ 1.1
TMEM116-218ENST00000552839 THOC2Q8NI27 1593 aaKnown RBP21.91■■□□□ 1.1
TMEM116-218ENST00000552839 BAZ1AQ9NRL2 1556 aaPredicted RBP21.91■■□□□ 1.1
TMEM116-218ENST00000552839 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
TMEM116-218ENST00000552839 LAMC3Q9Y6N6 1575 aa21.85■■□□□ 1.09
TMEM116-218ENST00000552839 KIF21AQ7Z4S6 1674 aa21.81■■□□□ 1.08
TMEM116-218ENST00000552839 MROH2BQ7Z745 1585 aa21.76■■□□□ 1.07
TMEM116-218ENST00000552839 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
TMEM116-218ENST00000552839 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
TMEM116-218ENST00000552839 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
TMEM116-218ENST00000552839 MRC2Q9UBG0 1479 aa21.56■■□□□ 1.04
TMEM116-218ENST00000552839 WDR62O43379 1518 aa21.53■■□□□ 1.04
TMEM116-218ENST00000552839 WIZO95785 1651 aa21.5■■□□□ 1.03
TMEM116-218ENST00000552839 CEP164Q9UPV0 1460 aa21.41■■□□□ 1.02
TMEM116-218ENST00000552839 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
TMEM116-218ENST00000552839 CFTRP13569 1480 aa21.29■■□□□ 1
TMEM116-218ENST00000552839 OSCARQ8IYS5 282 aa21.28■■□□□ 1
TMEM116-218ENST00000552839 URB2Q14146 1524 aaKnown RBP21.23■□□□□ 0.99
TMEM116-218ENST00000552839 RSF1Q96T23 1441 aaPredicted RBP21.18■□□□□ 0.98
TMEM116-218ENST00000552839 TOP2AP11388 1531 aaKnown RBP21.17■□□□□ 0.98
TMEM116-218ENST00000552839 PRDM2Q13029 1718 aa21.1■□□□□ 0.97
TMEM116-218ENST00000552839 RIMBP3CA6NJZ7 1639 aa21.07■□□□□ 0.96
TMEM116-218ENST00000552839 RIMBP3BA6NNM3 1639 aa21.07■□□□□ 0.96
TMEM116-218ENST00000552839 RIMBP3Q9UFD9 1639 aa21.07■□□□□ 0.96
TMEM116-218ENST00000552839 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
TMEM116-218ENST00000552839 IFT140Q96RY7 1462 aa20.99■□□□□ 0.95
TMEM116-218ENST00000552839 ARHGEF11O15085 1522 aa20.95■□□□□ 0.94
TMEM116-218ENST00000552839 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
TMEM116-218ENST00000552839 TOPBP1Q92547 1522 aa20.93■□□□□ 0.94
TMEM116-218ENST00000552839 EIF4G3O43432 1585 aaKnown RBP20.88■□□□□ 0.93
TMEM116-218ENST00000552839 ABCC8Q09428 1581 aa20.83■□□□□ 0.92
TMEM116-218ENST00000552839 CHD1O14646 1710 aa20.82■□□□□ 0.92
TMEM116-218ENST00000552839 CYB5RLQ6IPT4 315 aa20.82■□□□□ 0.92
TMEM116-218ENST00000552839 DNMBPQ6XZF7 1577 aa20.81■□□□□ 0.92
TMEM116-218ENST00000552839 TARBP1Q13395 1621 aaKnown RBP20.78■□□□□ 0.92
TMEM116-218ENST00000552839 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.92
TMEM116-218ENST00000552839 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
TMEM116-218ENST00000552839 FBLN2P98095 1184 aa20.7■□□□□ 0.9
TMEM116-218ENST00000552839 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
TMEM116-218ENST00000552839 TRHP20396 242 aaPredicted RBP20.68■□□□□ 0.9
TMEM116-218ENST00000552839 RAD54L2Q9Y4B4 1467 aa20.63■□□□□ 0.89
TMEM116-218ENST00000552839 TDRD9Q8NDG6 1382 aaKnown RBP20.59■□□□□ 0.89
TMEM116-218ENST00000552839 SOGA1O94964 1423 aa20.59■□□□□ 0.89
TMEM116-218ENST00000552839 SNAPC4Q5SXM2 1469 aa20.55■□□□□ 0.88
TMEM116-218ENST00000552839 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
TMEM116-218ENST00000552839 FGD5Q6ZNL6 1462 aa20.51■□□□□ 0.87
TMEM116-218ENST00000552839 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
TMEM116-218ENST00000552839 CHMP7Q8WUX9 453 aaPredicted RBP20.49■□□□□ 0.87
TMEM116-218ENST00000552839 SYNJ1O43426 1573 aa20.48■□□□□ 0.87
TMEM116-218ENST00000552839 MAGI1Q96QZ7 1491 aaPredicted RBP20.47■□□□□ 0.87
TMEM116-218ENST00000552839 CUX1P39880 1505 aa20.46■□□□□ 0.87
TMEM116-218ENST00000552839 GRIN2BQ13224 1484 aa20.43■□□□□ 0.86
TMEM116-218ENST00000552839 SYNJ2O15056 1496 aa20.41■□□□□ 0.86
TMEM116-218ENST00000552839 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
TMEM116-218ENST00000552839 GAPVD1Q14C86 1478 aa20.33■□□□□ 0.85
TMEM116-218ENST00000552839 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
TMEM116-218ENST00000552839 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
TMEM116-218ENST00000552839 ABCA10Q8WWZ4 1543 aa20.26■□□□□ 0.83
TMEM116-218ENST00000552839 ERCC6L2Q5T890 1561 aa20.22■□□□□ 0.83
TMEM116-218ENST00000552839 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
TMEM116-218ENST00000552839 GRIN2AQ12879 1464 aa20.18■□□□□ 0.82
TMEM116-218ENST00000552839 CEP170Q5SW79 1584 aa20.15■□□□□ 0.82
TMEM116-218ENST00000552839 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
TMEM116-218ENST00000552839 NUP160Q12769 1436 aa20.13■□□□□ 0.81
TMEM116-218ENST00000552839 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
TMEM116-218ENST00000552839 SHROOM2Q13796 1616 aa20.09■□□□□ 0.81
TMEM116-218ENST00000552839 FHAD1B1AJZ9 1412 aa20.05■□□□□ 0.8
TMEM116-218ENST00000552839 BIVM-ERCC5R4GMW8 1640 aa20.05■□□□□ 0.8
TMEM116-218ENST00000552839 KIF13AQ9H1H9 1805 aa20.04■□□□□ 0.8
TMEM116-218ENST00000552839 TOP2BQ02880 1626 aa20.04■□□□□ 0.8
TMEM116-218ENST00000552839 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
TMEM116-218ENST00000552839 PRG4Q92954 1404 aaPredicted RBP19.96■□□□□ 0.79
TMEM116-218ENST00000552839 JPH4Q96JJ6 628 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms