RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 WASHC2CQ9Y4E1 1318 aa27.17■■□□□ 1.94
VPS29-204ENST00000548259 EHBP1L1Q8N3D4 1523 aa27.17■■□□□ 1.94
VPS29-204ENST00000548259 ANKLE2Q86XL3 938 aa27.17■■□□□ 1.94
VPS29-204ENST00000548259 THEMISQ8N1K5 641 aaPredicted RBP27.16■■□□□ 1.94
VPS29-204ENST00000548259 CPS1P31327 1500 aa27.16■■□□□ 1.94
VPS29-204ENST00000548259 CEP162Q5TB80 1403 aa27.16■■□□□ 1.94
VPS29-204ENST00000548259 TIAM1Q13009 1591 aa27.15■■□□□ 1.94
VPS29-204ENST00000548259 PIP4K2BP78356 416 aa27.15■■□□□ 1.94
VPS29-204ENST00000548259 DNMT1P26358 1616 aaKnown RBP27.15■■□□□ 1.94
VPS29-204ENST00000548259 FAM135AQ9P2D6 1515 aa27.15■■□□□ 1.94
VPS29-204ENST00000548259 FBXO31Q5XUX0 539 aaPredicted RBP27.13■■□□□ 1.93
VPS29-204ENST00000548259 PZPP20742 1482 aa27.12■■□□□ 1.93
VPS29-204ENST00000548259 KDM5DQ9BY66 1539 aa27.11■■□□□ 1.93
VPS29-204ENST00000548259 CCDC141Q6ZP82 1450 aa27.11■■□□□ 1.93
VPS29-204ENST00000548259 SHANK2Q9UPX8 1470 aa27.11■■□□□ 1.93
VPS29-204ENST00000548259 HSPA1LP34931 641 aa27.1■■□□□ 1.93
VPS29-204ENST00000548259 TSPY4P0CV99 314 aa27.09■■□□□ 1.93
VPS29-204ENST00000548259 TSPY10P0CW01 314 aa27.09■■□□□ 1.93
VPS29-204ENST00000548259 NLRP1Q9C000 1473 aa27.07■■□□□ 1.92
VPS29-204ENST00000548259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.07■■□□□ 1.92
VPS29-204ENST00000548259 MIA2Q96PC5 1412 aa27.06■■□□□ 1.92
VPS29-204ENST00000548259 POLR1AO95602 1720 aaPredicted RBP27.03■■□□□ 1.92
VPS29-204ENST00000548259 CAMSAP2Q08AD1 1489 aa27.02■■□□□ 1.92
VPS29-204ENST00000548259 NEURL4Q96JN8 1562 aa27.01■■□□□ 1.92
VPS29-204ENST00000548259 UGGT1Q9NYU2 1555 aa27.01■■□□□ 1.91
VPS29-204ENST00000548259 NPHP4O75161 1426 aaPredicted RBP27■■□□□ 1.91
VPS29-204ENST00000548259 PHF23Q9BUL5 403 aaPredicted RBP27■■□□□ 1.91
VPS29-204ENST00000548259 NCOA2Q15596 1464 aa27■■□□□ 1.91
VPS29-204ENST00000548259 MED1Q15648 1581 aaPredicted RBP26.97■■□□□ 1.91
VPS29-204ENST00000548259 MED14O60244 1454 aa26.97■■□□□ 1.91
VPS29-204ENST00000548259 DEPDC5O75140 1603 aa26.94■■□□□ 1.9
VPS29-204ENST00000548259 VWDEQ8N2E2 1590 aa26.92■■□□□ 1.9
VPS29-204ENST00000548259 ARHGEF5Q12774 1597 aa26.92■■□□□ 1.9
VPS29-204ENST00000548259 IQGAP1P46940 1657 aa26.85■■□□□ 1.89
VPS29-204ENST00000548259 ABCC3O15438 1527 aa26.84■■□□□ 1.89
VPS29-204ENST00000548259 ZC3H13Q5T200 1668 aaKnown RBP26.82■■□□□ 1.88
VPS29-204ENST00000548259 ERVK-7P63135 1459 aa26.81■■□□□ 1.88
VPS29-204ENST00000548259 RNF17Q9BXT8 1623 aaKnown RBP26.81■■□□□ 1.88
VPS29-204ENST00000548259 LRRC7Q96NW7 1537 aa26.8■■□□□ 1.88
VPS29-204ENST00000548259 SENP3Q9H4L4 574 aaPredicted RBP26.79■■□□□ 1.88
VPS29-204ENST00000548259 EID1Q9Y6B2 187 aa26.78■■□□□ 1.88
VPS29-204ENST00000548259 SYNMO15061 1565 aa26.78■■□□□ 1.88
VPS29-204ENST00000548259 MAST1Q9Y2H9 1570 aa26.78■■□□□ 1.88
VPS29-204ENST00000548259 EIF2AK4Q9P2K8 1649 aaKnown RBP26.76■■□□□ 1.87
VPS29-204ENST00000548259 LRRC9Q6ZRR7 1453 aa26.76■■□□□ 1.87
VPS29-204ENST00000548259 SCAF11Q99590 1463 aaKnown RBP26.76■■□□□ 1.87
VPS29-204ENST00000548259 TXNDC2Q86VQ3 553 aa26.76■■□□□ 1.87
VPS29-204ENST00000548259 ALKQ9UM73 1620 aa26.74■■□□□ 1.87
VPS29-204ENST00000548259 MYOM3Q5VTT5 1437 aa26.73■■□□□ 1.87
VPS29-204ENST00000548259 DUOX2Q9NRD8 1548 aa26.71■■□□□ 1.87
VPS29-204ENST00000548259 VPS8Q8N3P4 1428 aa26.71■■□□□ 1.87
VPS29-204ENST00000548259 STAG3Q9UJ98 1225 aa26.7■■□□□ 1.86
VPS29-204ENST00000548259 ARHGAP31Q2M1Z3 1444 aa26.68■■□□□ 1.86
VPS29-204ENST00000548259 LTKP29376 864 aa26.67■■□□□ 1.86
VPS29-204ENST00000548259 KIF15Q9NS87 1388 aa26.66■■□□□ 1.86
VPS29-204ENST00000548259 SLIT1O75093 1534 aa26.65■■□□□ 1.86
VPS29-204ENST00000548259 KANK1Q14678 1352 aa26.65■■□□□ 1.86
VPS29-204ENST00000548259 ARHGAP23Q9P227 1491 aa26.65■■□□□ 1.86
VPS29-204ENST00000548259 UBR1Q8IWV7 1749 aa26.65■■□□□ 1.86
VPS29-204ENST00000548259 MROH1Q8NDA8 1641 aa26.65■■□□□ 1.86
VPS29-204ENST00000548259 STRCP1A6NGW2 1772 aa26.63■■□□□ 1.85
VPS29-204ENST00000548259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.63■■□□□ 1.85
VPS29-204ENST00000548259 MAP3K1Q13233 1512 aa26.63■■□□□ 1.85
VPS29-204ENST00000548259 ERBINQ96RT1 1412 aa26.63■■□□□ 1.85
VPS29-204ENST00000548259 KANK4Q5T7N3 995 aaPredicted RBP26.61■■□□□ 1.85
VPS29-204ENST00000548259 RRP7BPQ9NSQ0 103 aa26.61■■□□□ 1.85
VPS29-204ENST00000548259 TMEM2Q9UHN6 1383 aa26.6■■□□□ 1.85
VPS29-204ENST00000548259 CEP152O94986 1710 aa26.6■■□□□ 1.85
VPS29-204ENST00000548259 PRDM15P57071 1507 aaPredicted RBP26.59■■□□□ 1.85
VPS29-204ENST00000548259 FAM135BQ49AJ0 1406 aa26.58■■□□□ 1.85
VPS29-204ENST00000548259 APLP2Q06481 763 aa26.57■■□□□ 1.84
VPS29-204ENST00000548259 KCNA6P17658 529 aa26.55■■□□□ 1.84
VPS29-204ENST00000548259 TMEM94Q12767 1356 aa26.54■■□□□ 1.84
VPS29-204ENST00000548259 CFAP65Q6ZU64 1925 aaKnown RBP26.53■■□□□ 1.84
VPS29-204ENST00000548259 PROSER2Q86WR7 435 aaPredicted RBP26.53■■□□□ 1.84
VPS29-204ENST00000548259 ABCC5O15440 1437 aa26.52■■□□□ 1.84
VPS29-204ENST00000548259 RGS17Q9UGC6 210 aaPredicted RBP26.52■■□□□ 1.84
VPS29-204ENST00000548259 EFCAB6Q5THR3 1501 aa26.5■■□□□ 1.83
VPS29-204ENST00000548259 IDI1Q13907 227 aa26.5■■□□□ 1.83
VPS29-204ENST00000548259 BCANQ96GW7 911 aa26.5■■□□□ 1.83
VPS29-204ENST00000548259 ANKRD30AQ9BXX3 1397 aa26.49■■□□□ 1.83
VPS29-204ENST00000548259 PIK3C2BO00750 1634 aa26.48■■□□□ 1.83
VPS29-204ENST00000548259 SLC26A8Q96RN1 970 aa26.48■■□□□ 1.83
VPS29-204ENST00000548259 SLC52A1Q9NWF4 448 aa26.46■■□□□ 1.83
VPS29-204ENST00000548259 DAPK1P53355 1430 aa26.46■■□□□ 1.83
VPS29-204ENST00000548259 LOC105371045A0A1W2PR82 267 aa26.45■■□□□ 1.82
VPS29-204ENST00000548259 KDM5AP29375 1690 aaKnown RBP26.44■■□□□ 1.82
VPS29-204ENST00000548259 MSH6P52701 1360 aa26.44■■□□□ 1.82
VPS29-204ENST00000548259 LMTK2Q8IWU2 1503 aa26.44■■□□□ 1.82
VPS29-204ENST00000548259 HDGFP51858 240 aaKnown RBP26.43■■□□□ 1.82
VPS29-204ENST00000548259 PTPN23Q9H3S7 1636 aa26.43■■□□□ 1.82
VPS29-204ENST00000548259 CHIC2Q9UKJ5 165 aa26.42■■□□□ 1.82
VPS29-204ENST00000548259 NKTRP30414 1462 aaKnown RBP26.42■■□□□ 1.82
VPS29-204ENST00000548259 CROCC2H7BZ55 1655 aa26.41■■□□□ 1.82
VPS29-204ENST00000548259 XIRP1Q702N8 1843 aaKnown RBP26.4■■□□□ 1.82
VPS29-204ENST00000548259 POTEAQ6S8J7 498 aa26.39■■□□□ 1.82
VPS29-204ENST00000548259 SLAIN2Q9P270 581 aa26.38■■□□□ 1.81
VPS29-204ENST00000548259 FGD6Q6ZV73 1430 aa26.38■■□□□ 1.81
VPS29-204ENST00000548259 PPP1R15AO75807 674 aaPredicted RBP26.37■■□□□ 1.81
VPS29-204ENST00000548259 RBM33Q96EV2 1170 aaKnown RBP26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms