RNA–Protein interactions for RNA: ENST00000546538.1

CHERP-204, Transcript of calcium homeostasis endoplasmic reticulum protein, humanhuman

TSL 1 (best)

Gene CHERP, Length 1,429 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHERP-204ENST00000546538 MYOM3Q5VTT5 1437 aa29.6■■■□□ 2.33
CHERP-204ENST00000546538 PLA2R1Q13018 1463 aa29.59■■■□□ 2.33
CHERP-204ENST00000546538 TCOF1Q13428 1488 aaKnown RBP29.59■■■□□ 2.33
CHERP-204ENST00000546538 FBXO31Q5XUX0 539 aaPredicted RBP29.59■■■□□ 2.33
CHERP-204ENST00000546538 FAM135AQ9P2D6 1515 aa29.57■■■□□ 2.32
CHERP-204ENST00000546538 PZPP20742 1482 aa29.57■■■□□ 2.32
CHERP-204ENST00000546538 MIA2Q96PC5 1412 aa29.56■■■□□ 2.32
CHERP-204ENST00000546538 DNMT1P26358 1616 aaKnown RBP29.56■■■□□ 2.32
CHERP-204ENST00000546538 A2ML1A8K2U0 1454 aa29.55■■■□□ 2.32
CHERP-204ENST00000546538 TSPY4P0CV99 314 aa29.54■■■□□ 2.32
CHERP-204ENST00000546538 TSPY10P0CW01 314 aa29.54■■■□□ 2.32
CHERP-204ENST00000546538 RNF17Q9BXT8 1623 aaKnown RBP29.53■■■□□ 2.32
CHERP-204ENST00000546538 WASHC2CQ9Y4E1 1318 aa29.51■■■□□ 2.31
CHERP-204ENST00000546538 TNRQ92752 1358 aa29.5■■■□□ 2.31
CHERP-204ENST00000546538 MROH1Q8NDA8 1641 aa29.5■■■□□ 2.31
CHERP-204ENST00000546538 ZNF335Q9H4Z2 1342 aaPredicted RBP29.48■■■□□ 2.31
CHERP-204ENST00000546538 PKD2Q13563 968 aa29.47■■■□□ 2.31
CHERP-204ENST00000546538 ABCC3O15438 1527 aa29.47■■■□□ 2.31
CHERP-204ENST00000546538 EIF2AK4Q9P2K8 1649 aaKnown RBP29.46■■■□□ 2.31
CHERP-204ENST00000546538 NEURL4Q96JN8 1562 aa29.44■■■□□ 2.3
CHERP-204ENST00000546538 IQSEC2Q5JU85 1478 aa29.43■■■□□ 2.3
CHERP-204ENST00000546538 ABCC5O15440 1437 aa29.43■■■□□ 2.3
CHERP-204ENST00000546538 CROCC2H7BZ55 1655 aa29.42■■■□□ 2.3
CHERP-204ENST00000546538 PTPN23Q9H3S7 1636 aa29.42■■■□□ 2.3
CHERP-204ENST00000546538 ZC3H13Q5T200 1668 aaKnown RBP29.39■■■□□ 2.3
CHERP-204ENST00000546538 POLR1AO95602 1720 aaPredicted RBP29.39■■■□□ 2.3
CHERP-204ENST00000546538 DUOX2Q9NRD8 1548 aa29.38■■■□□ 2.29
CHERP-204ENST00000546538 SHANK2Q9UPX8 1470 aa29.37■■■□□ 2.29
CHERP-204ENST00000546538 SPATA31D1Q6ZQQ2 1576 aa29.37■■■□□ 2.29
CHERP-204ENST00000546538 NLRP1Q9C000 1473 aa29.37■■■□□ 2.29
CHERP-204ENST00000546538 CEP152O94986 1710 aa29.36■■■□□ 2.29
CHERP-204ENST00000546538 FGD6Q6ZV73 1430 aa29.36■■■□□ 2.29
CHERP-204ENST00000546538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.35■■■□□ 2.29
CHERP-204ENST00000546538 KIF15Q9NS87 1388 aa29.34■■■□□ 2.29
CHERP-204ENST00000546538 ERVK-7P63135 1459 aa29.34■■■□□ 2.29
CHERP-204ENST00000546538 DAPK1P53355 1430 aa29.33■■■□□ 2.29
CHERP-204ENST00000546538 UGGT1Q9NYU2 1555 aa29.33■■■□□ 2.29
CHERP-204ENST00000546538 PRDM15P57071 1507 aaPredicted RBP29.31■■■□□ 2.28
CHERP-204ENST00000546538 APLP2Q06481 763 aa29.29■■■□□ 2.28
CHERP-204ENST00000546538 RRP7BPQ9NSQ0 103 aa29.28■■■□□ 2.28
CHERP-204ENST00000546538 ERBINQ96RT1 1412 aa29.28■■■□□ 2.28
CHERP-204ENST00000546538 DEPDC5O75140 1603 aa29.26■■■□□ 2.27
CHERP-204ENST00000546538 CFAP65Q6ZU64 1925 aaKnown RBP29.25■■■□□ 2.27
CHERP-204ENST00000546538 MED14O60244 1454 aa29.25■■■□□ 2.27
CHERP-204ENST00000546538 THEMISQ8N1K5 641 aaPredicted RBP29.25■■■□□ 2.27
CHERP-204ENST00000546538 VWDEQ8N2E2 1590 aa29.24■■■□□ 2.27
CHERP-204ENST00000546538 ANKLE2Q86XL3 938 aa29.23■■■□□ 2.27
CHERP-204ENST00000546538 NPHP4O75161 1426 aaPredicted RBP29.2■■■□□ 2.27
CHERP-204ENST00000546538 ARHGAP31Q2M1Z3 1444 aa29.2■■■□□ 2.27
CHERP-204ENST00000546538 UBR1Q8IWV7 1749 aa29.2■■■□□ 2.27
CHERP-204ENST00000546538 CHIC2Q9UKJ5 165 aa29.2■■■□□ 2.26
CHERP-204ENST00000546538 UBAP1LF5GYI3 381 aa29.18■■■□□ 2.26
CHERP-204ENST00000546538 IQGAP1P46940 1657 aa29.17■■■□□ 2.26
CHERP-204ENST00000546538 CPS1P31327 1500 aa29.16■■■□□ 2.26
CHERP-204ENST00000546538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.14■■■□□ 2.26
CHERP-204ENST00000546538 ANKRD30AQ9BXX3 1397 aa29.14■■■□□ 2.26
CHERP-204ENST00000546538 STRCP1A6NGW2 1772 aa29.13■■■□□ 2.25
CHERP-204ENST00000546538 ADGRL2O95490 1459 aa29.13■■■□□ 2.25
CHERP-204ENST00000546538 LMTK2Q8IWU2 1503 aa29.11■■■□□ 2.25
CHERP-204ENST00000546538 ARHGAP23Q9P227 1491 aa29.1■■■□□ 2.25
CHERP-204ENST00000546538 DISP3Q9P2K9 1392 aa29.1■■■□□ 2.25
CHERP-204ENST00000546538 ALKQ9UM73 1620 aa29.08■■■□□ 2.25
CHERP-204ENST00000546538 SLIT1O75093 1534 aa29.08■■■□□ 2.25
CHERP-204ENST00000546538 PIK3C2BO00750 1634 aa29.08■■■□□ 2.25
CHERP-204ENST00000546538 LTKP29376 864 aa29.07■■■□□ 2.24
CHERP-204ENST00000546538 ILDR2Q71H61 639 aa29.07■■■□□ 2.24
CHERP-204ENST00000546538 SCAF11Q99590 1463 aaKnown RBP29.06■■■□□ 2.24
CHERP-204ENST00000546538 SYNMO15061 1565 aa29.04■■■□□ 2.24
CHERP-204ENST00000546538 FAM50AQ14320 339 aaKnown RBP29.04■■■□□ 2.24
CHERP-204ENST00000546538 KANK1Q14678 1352 aa29.04■■■□□ 2.24
CHERP-204ENST00000546538 EFCAB6Q5THR3 1501 aa29.02■■■□□ 2.24
CHERP-204ENST00000546538 LRRC7Q96NW7 1537 aa29■■■□□ 2.23
CHERP-204ENST00000546538 NOS1P29475 1434 aa29■■■□□ 2.23
CHERP-204ENST00000546538 ANKRD50Q9ULJ7 1429 aa28.98■■■□□ 2.23
CHERP-204ENST00000546538 IDI1Q13907 227 aa28.97■■■□□ 2.23
CHERP-204ENST00000546538 TXNDC2Q86VQ3 553 aa28.97■■■□□ 2.23
CHERP-204ENST00000546538 TMEM2Q9UHN6 1383 aa28.96■■■□□ 2.23
CHERP-204ENST00000546538 PIP4K2BP78356 416 aa28.95■■■□□ 2.23
CHERP-204ENST00000546538 KDM5AP29375 1690 aaKnown RBP28.95■■■□□ 2.23
CHERP-204ENST00000546538 HSPA1LP34931 641 aa28.94■■■□□ 2.22
CHERP-204ENST00000546538 TOM1O60784 492 aa28.93■■■□□ 2.22
CHERP-204ENST00000546538 SCAF1Q9H7N4 1312 aaKnown RBP28.9■■■□□ 2.22
CHERP-204ENST00000546538 ADGRB3O60242 1522 aa28.89■■■□□ 2.22
CHERP-204ENST00000546538 XIRP1Q702N8 1843 aaKnown RBP28.88■■■□□ 2.21
CHERP-204ENST00000546538 UNC13BO14795 1591 aa28.88■■■□□ 2.21
CHERP-204ENST00000546538 TET3O43151 1660 aa28.87■■■□□ 2.21
CHERP-204ENST00000546538 RPRD2Q5VT52 1461 aaKnown RBP28.86■■■□□ 2.21
CHERP-204ENST00000546538 EID1Q9Y6B2 187 aa28.86■■■□□ 2.21
CHERP-204ENST00000546538 STAG3Q9UJ98 1225 aa28.84■■■□□ 2.21
CHERP-204ENST00000546538 ROCK1Q13464 1354 aa28.82■■■□□ 2.2
CHERP-204ENST00000546538 PPARGC1BQ86YN6 1023 aaKnown RBP28.82■■■□□ 2.2
CHERP-204ENST00000546538 GCC2Q8IWJ2 1684 aa28.81■■■□□ 2.2
CHERP-204ENST00000546538 MYO5BQ9ULV0 1848 aa28.8■■■□□ 2.2
CHERP-204ENST00000546538 SLC52A1Q9NWF4 448 aa28.8■■■□□ 2.2
CHERP-204ENST00000546538 E9PCH4 1651 aa28.78■■■□□ 2.2
CHERP-204ENST00000546538 ZFYVE9O95405 1425 aa28.77■■■□□ 2.2
CHERP-204ENST00000546538 MED1Q15648 1581 aaPredicted RBP28.77■■■□□ 2.2
CHERP-204ENST00000546538 SLC26A8Q96RN1 970 aa28.77■■■□□ 2.2
CHERP-204ENST00000546538 TMEM131LA2VDJ0 1609 aa28.76■■■□□ 2.19
CHERP-204ENST00000546538 IQGAP3Q86VI3 1631 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms