RNA–Protein interactions for RNA: ENST00000546538.1

CHERP-204, Transcript of calcium homeostasis endoplasmic reticulum protein, humanhuman

TSL 1 (best)

Gene CHERP, Length 1,429 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHERP-204ENST00000546538 NISCHQ9Y2I1 1504 aa46.96■■■■■ 5.11
CHERP-204ENST00000546538 CCDC180Q9P1Z9 1646 aa42.04■■■■■ 4.32
CHERP-204ENST00000546538 ABCC9O60706 1549 aa41.96■■■■■ 4.31
CHERP-204ENST00000546538 RB1CC1Q8TDY2 1594 aa39.92■■■■□ 3.98
CHERP-204ENST00000546538 NACADO15069 1562 aa39.7■■■■□ 3.95
CHERP-204ENST00000546538 DCAF8L2P0C7V8 631 aa39.44■■■■□ 3.9
CHERP-204ENST00000546538 DNAJC5BQ9UF47 199 aa39.37■■■■□ 3.89
CHERP-204ENST00000546538 MYO15BQ96JP2 1530 aa39.21■■■■□ 3.87
CHERP-204ENST00000546538 UNC13AQ9UPW8 1703 aa39.15■■■■□ 3.86
CHERP-204ENST00000546538 PABPN1Q86U42 306 aaKnown RBP eCLIP39.09■■■■□ 3.85
CHERP-204ENST00000546538 ZCCHC6Q5VYS8 1495 aaKnown RBP38.96■■■■□ 3.83
CHERP-204ENST00000546538 BICRAQ9NZM4 1560 aa38.92■■■■□ 3.82
CHERP-204ENST00000546538 DCAF1Q9Y4B6 1507 aa38.77■■■■□ 3.8
CHERP-204ENST00000546538 SCRIBQ14160 1630 aa38.35■■■■□ 3.73
CHERP-204ENST00000546538 SHROOM4Q9ULL8 1493 aa38.24■■■■□ 3.71
CHERP-204ENST00000546538 CC2D2AQ9P2K1 1620 aa37.92■■■■□ 3.66
CHERP-204ENST00000546538 EIF4G1Q04637 1599 aaKnown RBP37.87■■■■□ 3.65
CHERP-204ENST00000546538 CECR2Q9BXF3 1484 aa37.76■■■■□ 3.64
CHERP-204ENST00000546538 NCAPD3P42695 1498 aa36.69■■■■□ 3.46
CHERP-204ENST00000546538 ATAD2BQ9ULI0 1458 aa36.61■■■■□ 3.45
CHERP-204ENST00000546538 SMARCA4P51532 1647 aa36.6■■■■□ 3.45
CHERP-204ENST00000546538 SMARCA2P51531 1590 aa36.45■■■■□ 3.43
CHERP-204ENST00000546538 HMGXB3Q12766 1538 aa36.42■■■■□ 3.42
CHERP-204ENST00000546538 BAZ1AQ9NRL2 1556 aaPredicted RBP36.38■■■■□ 3.41
CHERP-204ENST00000546538 PEG3Q9GZU2 1588 aa36.26■■■■□ 3.4
CHERP-204ENST00000546538 MROH2BQ7Z745 1585 aa36.23■■■■□ 3.39
CHERP-204ENST00000546538 BAZ1BQ9UIG0 1483 aaKnown RBP36.2■■■■□ 3.39
CHERP-204ENST00000546538 NESP48681 1621 aa36.14■■■■□ 3.38
CHERP-204ENST00000546538 ERCC6Q03468 1493 aa36.12■■■■□ 3.37
CHERP-204ENST00000546538 CUX2O14529 1486 aa36.05■■■■□ 3.36
CHERP-204ENST00000546538 DNAJC5Q9H3Z4 198 aa35.92■■■■□ 3.34
CHERP-204ENST00000546538 LAMC3Q9Y6N6 1575 aa35.8■■■■□ 3.32
CHERP-204ENST00000546538 WIZO95785 1651 aa35.78■■■■□ 3.32
CHERP-204ENST00000546538 THOC2Q8NI27 1593 aaKnown RBP35.74■■■■□ 3.31
CHERP-204ENST00000546538 KIF21AQ7Z4S6 1674 aa35.65■■■■□ 3.3
CHERP-204ENST00000546538 CADPSQ9ULU8 1353 aa35.55■■■■□ 3.28
CHERP-204ENST00000546538 PDS5BQ9NTI5 1447 aa35.54■■■■□ 3.28
CHERP-204ENST00000546538 RSF1Q96T23 1441 aaPredicted RBP35.5■■■■□ 3.27
CHERP-204ENST00000546538 TOP2AP11388 1531 aaKnown RBP35.3■■■■□ 3.24
CHERP-204ENST00000546538 MRC2Q9UBG0 1479 aa35.29■■■■□ 3.24
CHERP-204ENST00000546538 WDR62O43379 1518 aa35.24■■■■□ 3.23
CHERP-204ENST00000546538 CFTRP13569 1480 aa35.21■■■■□ 3.23
CHERP-204ENST00000546538 FANCD2Q9BXW9 1451 aa35.16■■■■□ 3.22
CHERP-204ENST00000546538 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
CHERP-204ENST00000546538 URB2Q14146 1524 aaKnown RBP34.93■■■■□ 3.18
CHERP-204ENST00000546538 CCDC88BA6NC98 1476 aa34.92■■■■□ 3.18
CHERP-204ENST00000546538 PRDM2Q13029 1718 aa34.83■■■■□ 3.17
CHERP-204ENST00000546538 TOPBP1Q92547 1522 aa34.53■■■■□ 3.12
CHERP-204ENST00000546538 ZNF608Q9ULD9 1512 aaPredicted RBP34.49■■■■□ 3.11
CHERP-204ENST00000546538 IFT140Q96RY7 1462 aa34.45■■■■□ 3.11
CHERP-204ENST00000546538 DNMBPQ6XZF7 1577 aa34.39■■■■□ 3.1
CHERP-204ENST00000546538 OSCARQ8IYS5 282 aa34.38■■■■□ 3.09
CHERP-204ENST00000546538 TRIM41Q8WV44 630 aa34.36■■■■□ 3.09
CHERP-204ENST00000546538 ABCC8Q09428 1581 aa34.35■■■■□ 3.09
CHERP-204ENST00000546538 EIF4G3O43432 1585 aaKnown RBP34.26■■■■□ 3.07
CHERP-204ENST00000546538 TARBP1Q13395 1621 aaKnown RBP34.26■■■■□ 3.07
CHERP-204ENST00000546538 POLA1P09884 1462 aaPredicted RBP34.2■■■■□ 3.07
CHERP-204ENST00000546538 AQRO60306 1485 aaKnown RBP eCLIP34.15■■■■□ 3.069e-7■■■□□ 18.1
CHERP-204ENST00000546538 RAD54L2Q9Y4B4 1467 aa34.09■■■■□ 3.05
CHERP-204ENST00000546538 RIMBP3CA6NJZ7 1639 aa34.03■■■■□ 3.04
CHERP-204ENST00000546538 RIMBP3BA6NNM3 1639 aa34.03■■■■□ 3.04
CHERP-204ENST00000546538 RIMBP3Q9UFD9 1639 aa34.03■■■■□ 3.04
CHERP-204ENST00000546538 CUX1P39880 1505 aa34.02■■■■□ 3.04
CHERP-204ENST00000546538 FGD5Q6ZNL6 1462 aa33.99■■■■□ 3.03
CHERP-204ENST00000546538 SOGA1O94964 1423 aa33.98■■■■□ 3.03
CHERP-204ENST00000546538 CHD1O14646 1710 aa33.98■■■■□ 3.03
CHERP-204ENST00000546538 TDRD9Q8NDG6 1382 aaKnown RBP33.94■■■■□ 3.02
CHERP-204ENST00000546538 ARHGEF11O15085 1522 aa33.93■■■■□ 3.02
CHERP-204ENST00000546538 SUPT5HO00267 1087 aaKnown RBP33.92■■■■□ 3.02
CHERP-204ENST00000546538 WDR97A6NE52 1622 aa33.8■■■■□ 3
CHERP-204ENST00000546538 SNAPC4Q5SXM2 1469 aa33.79■■■■□ 3
CHERP-204ENST00000546538 FBLN2P98095 1184 aa33.78■■■■□ 3
CHERP-204ENST00000546538 GRIN2BQ13224 1484 aa33.67■■■□□ 2.98
CHERP-204ENST00000546538 MAGI1Q96QZ7 1491 aaPredicted RBP33.66■■■□□ 2.98
CHERP-204ENST00000546538 ARAP1Q96P48 1450 aa33.64■■■□□ 2.98
CHERP-204ENST00000546538 CLASP1Q7Z460 1538 aa33.63■■■□□ 2.97
CHERP-204ENST00000546538 CYB5RLQ6IPT4 315 aa33.61■■■□□ 2.97
CHERP-204ENST00000546538 ABCA10Q8WWZ4 1543 aa33.6■■■□□ 2.97
CHERP-204ENST00000546538 PBRM1Q86U86 1689 aa33.59■■■□□ 2.97
CHERP-204ENST00000546538 GAPVD1Q14C86 1478 aa33.58■■■□□ 2.97
CHERP-204ENST00000546538 ABCA5Q8WWZ7 1642 aa33.58■■■□□ 2.97
CHERP-204ENST00000546538 SYNJ2O15056 1496 aa33.57■■■□□ 2.96
CHERP-204ENST00000546538 CHMP7Q8WUX9 453 aaPredicted RBP33.54■■■□□ 2.96
CHERP-204ENST00000546538 SYNJ1O43426 1573 aa33.51■■■□□ 2.95
CHERP-204ENST00000546538 BIVM-ERCC5R4GMW8 1640 aa33.47■■■□□ 2.95
CHERP-204ENST00000546538 TOP2BQ02880 1626 aa33.46■■■□□ 2.95
CHERP-204ENST00000546538 WRNQ14191 1432 aaPredicted RBP eCLIP33.43■■■□□ 2.94
CHERP-204ENST00000546538 ADAMTS12P58397 1594 aa33.3■■■□□ 2.92
CHERP-204ENST00000546538 GRIN2AQ12879 1464 aa33.28■■■□□ 2.92
CHERP-204ENST00000546538 CEP170Q5SW79 1584 aa33.2■■■□□ 2.91
CHERP-204ENST00000546538 NUP160Q12769 1436 aa33.18■■■□□ 2.9
CHERP-204ENST00000546538 ERCC6L2Q5T890 1561 aa33.17■■■□□ 2.9
CHERP-204ENST00000546538 ERICH3Q5RHP9 1530 aa33.15■■■□□ 2.9
CHERP-204ENST00000546538 FHAD1B1AJZ9 1412 aa33.15■■■□□ 2.9
CHERP-204ENST00000546538 TRHP20396 242 aaPredicted RBP33.12■■■□□ 2.89
CHERP-204ENST00000546538 SHROOM2Q13796 1616 aa33.04■■■□□ 2.88
CHERP-204ENST00000546538 RUSC2Q8N2Y8 1516 aa32.84■■■□□ 2.85
CHERP-204ENST00000546538 PRG4Q92954 1404 aaPredicted RBP32.81■■■□□ 2.84
CHERP-204ENST00000546538 IGF1RP08069 1367 aa32.81■■■□□ 2.84
CHERP-204ENST00000546538 JPH4Q96JJ6 628 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms