RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CAMSAP1Q5T5Y3 1602 aa20.63■□□□□ 0.89
RTN3-213ENST00000543552 MAST1Q9Y2H9 1570 aa20.63■□□□□ 0.89
RTN3-213ENST00000543552 KANK4Q5T7N3 995 aaPredicted RBP20.62■□□□□ 0.89
RTN3-213ENST00000543552 CEP170BQ9Y4F5 1589 aaPredicted RBP20.62■□□□□ 0.89
RTN3-213ENST00000543552 PLA2R1Q13018 1463 aa20.59■□□□□ 0.89
RTN3-213ENST00000543552 WASHC2CQ9Y4E1 1318 aa20.58■□□□□ 0.89
RTN3-213ENST00000543552 PZPP20742 1482 aa20.57■□□□□ 0.88
RTN3-213ENST00000543552 EIF2AK4Q9P2K8 1649 aaKnown RBP20.56■□□□□ 0.88
RTN3-213ENST00000543552 A2ML1A8K2U0 1454 aa20.56■□□□□ 0.88
RTN3-213ENST00000543552 PKD2Q13563 968 aa20.55■□□□□ 0.88
RTN3-213ENST00000543552 RNF17Q9BXT8 1623 aaKnown RBP20.55■□□□□ 0.88
RTN3-213ENST00000543552 TNRQ92752 1358 aa20.54■□□□□ 0.88
RTN3-213ENST00000543552 ZC3H13Q5T200 1668 aaKnown RBP20.54■□□□□ 0.88
RTN3-213ENST00000543552 TCOF1Q13428 1488 aaKnown RBP20.52■□□□□ 0.88
RTN3-213ENST00000543552 SHANK2Q9UPX8 1470 aa20.52■□□□□ 0.88
RTN3-213ENST00000543552 DUOX2Q9NRD8 1548 aa20.51■□□□□ 0.87
RTN3-213ENST00000543552 IQSEC2Q5JU85 1478 aa20.5■□□□□ 0.87
RTN3-213ENST00000543552 PTPN23Q9H3S7 1636 aa20.5■□□□□ 0.87
RTN3-213ENST00000543552 NCKAP5LQ9HCH0 1330 aa20.5■□□□□ 0.87
RTN3-213ENST00000543552 DNMT1P26358 1616 aaKnown RBP20.49■□□□□ 0.87
RTN3-213ENST00000543552 CROCC2H7BZ55 1655 aa20.49■□□□□ 0.87
RTN3-213ENST00000543552 NLRP1Q9C000 1473 aa20.49■□□□□ 0.87
RTN3-213ENST00000543552 LTBP4Q8N2S1 1624 aa20.49■□□□□ 0.87
RTN3-213ENST00000543552 ABCC3O15438 1527 aa20.48■□□□□ 0.87
RTN3-213ENST00000543552 FGD6Q6ZV73 1430 aa20.47■□□□□ 0.87
RTN3-213ENST00000543552 FBXO31Q5XUX0 539 aaPredicted RBP20.47■□□□□ 0.87
RTN3-213ENST00000543552 KIF15Q9NS87 1388 aa20.46■□□□□ 0.87
RTN3-213ENST00000543552 ERBINQ96RT1 1412 aa20.45■□□□□ 0.86
RTN3-213ENST00000543552 ABCC5O15440 1437 aa20.44■□□□□ 0.86
RTN3-213ENST00000543552 POLR1AO95602 1720 aaPredicted RBP20.44■□□□□ 0.86
RTN3-213ENST00000543552 DAPK1P53355 1430 aa20.44■□□□□ 0.86
RTN3-213ENST00000543552 MROH1Q8NDA8 1641 aa20.42■□□□□ 0.86
RTN3-213ENST00000543552 THEMISQ8N1K5 641 aaPredicted RBP20.42■□□□□ 0.86
RTN3-213ENST00000543552 UGGT1Q9NYU2 1555 aa20.42■□□□□ 0.86
RTN3-213ENST00000543552 PRDM15P57071 1507 aaPredicted RBP20.41■□□□□ 0.86
RTN3-213ENST00000543552 SPATA31D1Q6ZQQ2 1576 aa20.41■□□□□ 0.86
RTN3-213ENST00000543552 ERVK-7P63135 1459 aa20.39■□□□□ 0.85
RTN3-213ENST00000543552 ANKRD30AQ9BXX3 1397 aa20.39■□□□□ 0.85
RTN3-213ENST00000543552 ZNF335Q9H4Z2 1342 aaPredicted RBP20.39■□□□□ 0.85
RTN3-213ENST00000543552 CEP152O94986 1710 aa20.39■□□□□ 0.85
RTN3-213ENST00000543552 ANKLE2Q86XL3 938 aa20.38■□□□□ 0.85
RTN3-213ENST00000543552 RRP7BPQ9NSQ0 103 aa20.38■□□□□ 0.85
RTN3-213ENST00000543552 KANK1Q14678 1352 aa20.37■□□□□ 0.85
RTN3-213ENST00000543552 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.36■□□□□ 0.85
RTN3-213ENST00000543552 NEURL4Q96JN8 1562 aa20.36■□□□□ 0.85
RTN3-213ENST00000543552 DEPDC5O75140 1603 aa20.35■□□□□ 0.85
RTN3-213ENST00000543552 ARHGAP31Q2M1Z3 1444 aa20.35■□□□□ 0.85
RTN3-213ENST00000543552 MED14O60244 1454 aa20.32■□□□□ 0.84
RTN3-213ENST00000543552 CPS1P31327 1500 aa20.32■□□□□ 0.84
RTN3-213ENST00000543552 ADGRL2O95490 1459 aa20.3■□□□□ 0.84
RTN3-213ENST00000543552 NPHP4O75161 1426 aaPredicted RBP20.3■□□□□ 0.84
RTN3-213ENST00000543552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.3■□□□□ 0.84
RTN3-213ENST00000543552 CHIC2Q9UKJ5 165 aa20.3■□□□□ 0.84
RTN3-213ENST00000543552 FAM50AQ14320 339 aaKnown RBP20.29■□□□□ 0.84
RTN3-213ENST00000543552 IQGAP1P46940 1657 aa20.28■□□□□ 0.84
RTN3-213ENST00000543552 LMTK2Q8IWU2 1503 aa20.27■□□□□ 0.84
RTN3-213ENST00000543552 UBAP1LF5GYI3 381 aa20.27■□□□□ 0.84
RTN3-213ENST00000543552 UBR1Q8IWV7 1749 aa20.27■□□□□ 0.83
RTN3-213ENST00000543552 CFAP65Q6ZU64 1925 aaKnown RBP20.25■□□□□ 0.83
RTN3-213ENST00000543552 VWDEQ8N2E2 1590 aa20.25■□□□□ 0.83
RTN3-213ENST00000543552 SCAF11Q99590 1463 aaKnown RBP20.23■□□□□ 0.83
RTN3-213ENST00000543552 ANKRD50Q9ULJ7 1429 aa20.22■□□□□ 0.83
RTN3-213ENST00000543552 SLIT1O75093 1534 aa20.22■□□□□ 0.83
RTN3-213ENST00000543552 EFCAB6Q5THR3 1501 aa20.22■□□□□ 0.83
RTN3-213ENST00000543552 KDM5AP29375 1690 aaKnown RBP20.2■□□□□ 0.82
RTN3-213ENST00000543552 ARHGAP23Q9P227 1491 aa20.2■□□□□ 0.82
RTN3-213ENST00000543552 STAG3Q9UJ98 1225 aa20.2■□□□□ 0.82
RTN3-213ENST00000543552 EID1Q9Y6B2 187 aa20.2■□□□□ 0.82
RTN3-213ENST00000543552 PIK3C2BO00750 1634 aa20.19■□□□□ 0.82
RTN3-213ENST00000543552 TOM1O60784 492 aa20.18■□□□□ 0.82
RTN3-213ENST00000543552 RPRD2Q5VT52 1461 aaKnown RBP20.18■□□□□ 0.82
RTN3-213ENST00000543552 SYNMO15061 1565 aa20.17■□□□□ 0.82
RTN3-213ENST00000543552 TXNDC2Q86VQ3 553 aa20.17■□□□□ 0.82
RTN3-213ENST00000543552 DISP3Q9P2K9 1392 aa20.17■□□□□ 0.82
RTN3-213ENST00000543552 ROCK1Q13464 1354 aa20.15■□□□□ 0.82
RTN3-213ENST00000543552 TMEM2Q9UHN6 1383 aa20.15■□□□□ 0.82
RTN3-213ENST00000543552 NOS1P29475 1434 aa20.14■□□□□ 0.81
RTN3-213ENST00000543552 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
RTN3-213ENST00000543552 SLC52A1Q9NWF4 448 aa20.13■□□□□ 0.81
RTN3-213ENST00000543552 TET3O43151 1660 aa20.13■□□□□ 0.81
RTN3-213ENST00000543552 ADGRB3O60242 1522 aa20.12■□□□□ 0.81
RTN3-213ENST00000543552 UNC13BO14795 1591 aa20.12■□□□□ 0.81
RTN3-213ENST00000543552 LTKP29376 864 aa20.11■□□□□ 0.81
RTN3-213ENST00000543552 IDI1Q13907 227 aa20.11■□□□□ 0.81
RTN3-213ENST00000543552 LRRC7Q96NW7 1537 aa20.09■□□□□ 0.81
RTN3-213ENST00000543552 PIP4K2BP78356 416 aa20.09■□□□□ 0.81
RTN3-213ENST00000543552 GCC2Q8IWJ2 1684 aa20.09■□□□□ 0.81
RTN3-213ENST00000543552 STRCP1A6NGW2 1772 aa20.08■□□□□ 0.8
RTN3-213ENST00000543552 IQGAP3Q86VI3 1631 aa20.04■□□□□ 0.8
RTN3-213ENST00000543552 ITGAEP38570 1179 aa20.02■□□□□ 0.8
RTN3-213ENST00000543552 HDGFP51858 240 aaKnown RBP20.02■□□□□ 0.8
RTN3-213ENST00000543552 HSPA1LP34931 641 aa20.01■□□□□ 0.79
RTN3-213ENST00000543552 NUP155O75694 1391 aa19.99■□□□□ 0.79
RTN3-213ENST00000543552 ALKQ9UM73 1620 aa19.99■□□□□ 0.79
RTN3-213ENST00000543552 E9PCH4 1651 aa19.99■□□□□ 0.79
RTN3-213ENST00000543552 PPP1R15AO75807 674 aaPredicted RBP19.98■□□□□ 0.79
RTN3-213ENST00000543552 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
RTN3-213ENST00000543552 BCANQ96GW7 911 aa19.98■□□□□ 0.79
RTN3-213ENST00000543552 TMEM131LA2VDJ0 1609 aa19.98■□□□□ 0.79
RTN3-213ENST00000543552 ZFYVE9O95405 1425 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 266.3 ms