RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 CFAP65Q6ZU64 1925 aaKnown RBP15.2■□□□□ 0.02
CHFR-219ENST00000541341 ILDR2Q71H61 639 aa15.2■□□□□ 0.02
CHFR-219ENST00000541341 SPATA31D1Q6ZQQ2 1576 aa15.19■□□□□ 0.02
CHFR-219ENST00000541341 POLR1AO95602 1720 aaPredicted RBP15.19■□□□□ 0.02
CHFR-219ENST00000541341 PLEKHH2Q8IVE3 1493 aa15.19■□□□□ 0.02
CHFR-219ENST00000541341 ZNF335Q9H4Z2 1342 aaPredicted RBP15.17■□□□□ 0.02
CHFR-219ENST00000541341 NPATQ14207 1427 aa15.17■□□□□ 0.02
CHFR-219ENST00000541341 KIAA1107Q9UPP5 1409 aa15.17■□□□□ 0.02
CHFR-219ENST00000541341 PTPRKQ15262 1439 aa15.17■□□□□ 0.02
CHFR-219ENST00000541341 DNMT1P26358 1616 aaKnown RBP15.14■□□□□ 0.01
CHFR-219ENST00000541341 APLP2Q06481 763 aa15.14■□□□□ 0.01
CHFR-219ENST00000541341 MBD5Q9P267 1494 aa15.14■□□□□ 0.01
CHFR-219ENST00000541341 CAMSAP2Q08AD1 1489 aa15.13■□□□□ 0.01
CHFR-219ENST00000541341 KANK4Q5T7N3 995 aaPredicted RBP15.11■□□□□ 0.01
CHFR-219ENST00000541341 NCOA2Q15596 1464 aa15.11■□□□□ 0.01
CHFR-219ENST00000541341 UBAP1LF5GYI3 381 aa15.1■□□□□ 0.01
CHFR-219ENST00000541341 KIF3BO15066 747 aa15.1■□□□□ 0.01
CHFR-219ENST00000541341 FBXO31Q5XUX0 539 aaPredicted RBP15.1■□□□□ 0.01
CHFR-219ENST00000541341 CEP152O94986 1710 aa15.09■□□□□ 0.01
CHFR-219ENST00000541341 TCOF1Q13428 1488 aaKnown RBP15.08■□□□□ 0.01
CHFR-219ENST00000541341 CCDC141Q6ZP82 1450 aa15.08■□□□□ 0.01
CHFR-219ENST00000541341 A2ML1A8K2U0 1454 aa15.08■□□□□ 0
CHFR-219ENST00000541341 PLA2R1Q13018 1463 aa15.08■□□□□ 0
CHFR-219ENST00000541341 IQSEC2Q5JU85 1478 aa15.08■□□□□ 0
CHFR-219ENST00000541341 NEURL4Q96JN8 1562 aa15.07■□□□□ 0
CHFR-219ENST00000541341 DHX29Q7Z478 1369 aaKnown RBP15.07■□□□□ 0
CHFR-219ENST00000541341 KDM5DQ9BY66 1539 aa15.07■□□□□ 0
CHFR-219ENST00000541341 PPP6R1Q9UPN7 881 aa15.06■□□□□ 0
CHFR-219ENST00000541341 PKD2Q13563 968 aa15.05■□□□□ -0
CHFR-219ENST00000541341 RTEL1-TNFRSF6BF6WH68 1400 aa15.05■□□□□ -0
CHFR-219ENST00000541341 TNRQ92752 1358 aa15.04■□□□□ -0
CHFR-219ENST00000541341 STRCP1A6NGW2 1772 aa15.03■□□□□ -0
CHFR-219ENST00000541341 WASHC2CQ9Y4E1 1318 aa15.03■□□□□ -0
CHFR-219ENST00000541341 PIP4K2BP78356 416 aa15.03■□□□□ -0
CHFR-219ENST00000541341 SENP3Q9H4L4 574 aaPredicted RBP15.03■□□□□ -0
CHFR-219ENST00000541341 ARHGEF5Q12774 1597 aa15.02■□□□□ -0
CHFR-219ENST00000541341 PZPP20742 1482 aa15.02■□□□□ -0
CHFR-219ENST00000541341 SOCS7O14512 581 aa15.02■□□□□ -0
CHFR-219ENST00000541341 MYOM3Q5VTT5 1437 aa15.01□□□□□ -0.01
CHFR-219ENST00000541341 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.01□□□□□ -0.012e-6■■□□□ 13.2
CHFR-219ENST00000541341 IQGAP1P46940 1657 aa15□□□□□ -0.01
CHFR-219ENST00000541341 UGGT1Q9NYU2 1555 aa15□□□□□ -0.01
CHFR-219ENST00000541341 MIA2Q96PC5 1412 aa15□□□□□ -0.01
CHFR-219ENST00000541341 RNF17Q9BXT8 1623 aaKnown RBP14.99□□□□□ -0.01
CHFR-219ENST00000541341 ZC3H13Q5T200 1668 aaKnown RBP14.99□□□□□ -0.01
CHFR-219ENST00000541341 PTPN23Q9H3S7 1636 aa14.99□□□□□ -0.01
CHFR-219ENST00000541341 TSPY4P0CV99 314 aa14.98□□□□□ -0.01
CHFR-219ENST00000541341 TSPY10P0CW01 314 aa14.98□□□□□ -0.01
CHFR-219ENST00000541341 SHANK2Q9UPX8 1470 aa14.97□□□□□ -0.01
CHFR-219ENST00000541341 VWDEQ8N2E2 1590 aa14.97□□□□□ -0.01
CHFR-219ENST00000541341 UBR1Q8IWV7 1749 aa14.97□□□□□ -0.01
CHFR-219ENST00000541341 CROCC2H7BZ55 1655 aa14.97□□□□□ -0.01
CHFR-219ENST00000541341 MROH1Q8NDA8 1641 aa14.96□□□□□ -0.01
CHFR-219ENST00000541341 FGD6Q6ZV73 1430 aa14.96□□□□□ -0.01
CHFR-219ENST00000541341 MAST1Q9Y2H9 1570 aa14.96□□□□□ -0.01
CHFR-219ENST00000541341 ABCC3O15438 1527 aa14.96□□□□□ -0.02
CHFR-219ENST00000541341 EIF2AK4Q9P2K8 1649 aaKnown RBP14.95□□□□□ -0.02
CHFR-219ENST00000541341 HSPA1LP34931 641 aa14.95□□□□□ -0.02
CHFR-219ENST00000541341 DEPDC5O75140 1603 aa14.95□□□□□ -0.02
CHFR-219ENST00000541341 RRBP1Q9P2E9 1410 aaKnown RBP14.94□□□□□ -0.02
CHFR-219ENST00000541341 CPS1P31327 1500 aa14.94□□□□□ -0.02
CHFR-219ENST00000541341 ANKLE2Q86XL3 938 aa14.94□□□□□ -0.02
CHFR-219ENST00000541341 MED1Q15648 1581 aaPredicted RBP14.94□□□□□ -0.02
CHFR-219ENST00000541341 NPHP4O75161 1426 aaPredicted RBP14.93□□□□□ -0.02
CHFR-219ENST00000541341 FAM135AQ9P2D6 1515 aa14.93□□□□□ -0.02
CHFR-219ENST00000541341 XIRP1Q702N8 1843 aaKnown RBP14.92□□□□□ -0.02
CHFR-219ENST00000541341 RSPH4AQ5TD94 716 aa14.92□□□□□ -0.02
CHFR-219ENST00000541341 NLRP1Q9C000 1473 aa14.92□□□□□ -0.02
CHFR-219ENST00000541341 ALKQ9UM73 1620 aa14.92□□□□□ -0.02
CHFR-219ENST00000541341 THEMISQ8N1K5 641 aaPredicted RBP14.91□□□□□ -0.02
CHFR-219ENST00000541341 ERVK-7P63135 1459 aa14.9□□□□□ -0.02
CHFR-219ENST00000541341 PIK3C2BO00750 1634 aa14.89□□□□□ -0.03
CHFR-219ENST00000541341 TOM1O60784 492 aa14.89□□□□□ -0.03
CHFR-219ENST00000541341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.88□□□□□ -0.03
CHFR-219ENST00000541341 MED14O60244 1454 aa14.87□□□□□ -0.03
CHFR-219ENST00000541341 MYO5BQ9ULV0 1848 aa14.87□□□□□ -0.03
CHFR-219ENST00000541341 DUOX2Q9NRD8 1548 aa14.87□□□□□ -0.03
CHFR-219ENST00000541341 RRP7BPQ9NSQ0 103 aa14.86□□□□□ -0.03
CHFR-219ENST00000541341 SYNMO15061 1565 aa14.85□□□□□ -0.03
CHFR-219ENST00000541341 LRRC7Q96NW7 1537 aa14.85□□□□□ -0.03
CHFR-219ENST00000541341 PRDM15P57071 1507 aaPredicted RBP14.83□□□□□ -0.04
CHFR-219ENST00000541341 MIER1Q8N108 512 aa14.83□□□□□ -0.04
CHFR-219ENST00000541341 CHIC2Q9UKJ5 165 aa14.83□□□□□ -0.04
CHFR-219ENST00000541341 KIF15Q9NS87 1388 aa14.83□□□□□ -0.04
CHFR-219ENST00000541341 ABCC5O15440 1437 aa14.82□□□□□ -0.04
CHFR-219ENST00000541341 SCAF11Q99590 1463 aaKnown RBP14.82□□□□□ -0.04
CHFR-219ENST00000541341 LTKP29376 864 aa14.81□□□□□ -0.04
CHFR-219ENST00000541341 PHF23Q9BUL5 403 aaPredicted RBP14.81□□□□□ -0.04
CHFR-219ENST00000541341 TXNDC2Q86VQ3 553 aa14.8□□□□□ -0.04
CHFR-219ENST00000541341 DAPK1P53355 1430 aa14.8□□□□□ -0.04
CHFR-219ENST00000541341 RBM33Q96EV2 1170 aaKnown RBP14.78□□□□□ -0.04
CHFR-219ENST00000541341 SLIT1O75093 1534 aa14.77□□□□□ -0.04
CHFR-219ENST00000541341 ADGRL2O95490 1459 aa14.77□□□□□ -0.04
CHFR-219ENST00000541341 STAG3Q9UJ98 1225 aa14.77□□□□□ -0.05
CHFR-219ENST00000541341 ARHGAP23Q9P227 1491 aa14.76□□□□□ -0.05
CHFR-219ENST00000541341 ERBINQ96RT1 1412 aa14.76□□□□□ -0.05
CHFR-219ENST00000541341 YTHDC1Q96MU7 727 aaKnown RBP14.76□□□□□ -0.05
CHFR-219ENST00000541341 GCC2Q8IWJ2 1684 aa14.76□□□□□ -0.05
CHFR-219ENST00000541341 TIMELESSQ9UNS1 1208 aa14.75□□□□□ -0.05
CHFR-219ENST00000541341 EFCAB6Q5THR3 1501 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms