RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ZNF335Q9H4Z2 1342 aaPredicted RBP13.37□□□□□ -0.27
USP28-203ENST00000537490 ARHGEF5Q12774 1597 aa13.37□□□□□ -0.27
USP28-203ENST00000537490 MYO3AQ8NEV4 1616 aa13.36□□□□□ -0.27
USP28-203ENST00000537490 CEP170BQ9Y4F5 1589 aaPredicted RBP13.36□□□□□ -0.27
USP28-203ENST00000537490 PLA2R1Q13018 1463 aa13.36□□□□□ -0.27
USP28-203ENST00000537490 TNRQ92752 1358 aa13.35□□□□□ -0.27
USP28-203ENST00000537490 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
USP28-203ENST00000537490 A2ML1A8K2U0 1454 aa13.35□□□□□ -0.27
USP28-203ENST00000537490 TCOF1Q13428 1488 aaKnown RBP13.35□□□□□ -0.27
USP28-203ENST00000537490 MYOM3Q5VTT5 1437 aa13.33□□□□□ -0.28
USP28-203ENST00000537490 MIA2Q96PC5 1412 aa13.33□□□□□ -0.28
USP28-203ENST00000537490 PZPP20742 1482 aa13.33□□□□□ -0.28
USP28-203ENST00000537490 ZNF142P52746 1687 aaPredicted RBP13.33□□□□□ -0.28
USP28-203ENST00000537490 KDM5DQ9BY66 1539 aa13.33□□□□□ -0.28
USP28-203ENST00000537490 DNMT1P26358 1616 aaKnown RBP13.31□□□□□ -0.28
USP28-203ENST00000537490 IQSEC2Q5JU85 1478 aa13.3□□□□□ -0.28
USP28-203ENST00000537490 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
USP28-203ENST00000537490 MAST1Q9Y2H9 1570 aa13.3□□□□□ -0.28
USP28-203ENST00000537490 APLP2Q06481 763 aa13.3□□□□□ -0.28
USP28-203ENST00000537490 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP28-203ENST00000537490 ANKLE2Q86XL3 938 aa13.28□□□□□ -0.28
USP28-203ENST00000537490 THEMISQ8N1K5 641 aaPredicted RBP13.28□□□□□ -0.28
USP28-203ENST00000537490 ABCC5O15440 1437 aa13.27□□□□□ -0.29
USP28-203ENST00000537490 UBAP1LF5GYI3 381 aa13.26□□□□□ -0.29
USP28-203ENST00000537490 ABCC3O15438 1527 aa13.26□□□□□ -0.29
USP28-203ENST00000537490 RRP7BPQ9NSQ0 103 aa13.26□□□□□ -0.29
USP28-203ENST00000537490 NLRP1Q9C000 1473 aa13.25□□□□□ -0.29
USP28-203ENST00000537490 RNF17Q9BXT8 1623 aaKnown RBP13.24□□□□□ -0.29
USP28-203ENST00000537490 KIF15Q9NS87 1388 aa13.24□□□□□ -0.29
USP28-203ENST00000537490 DISP3Q9P2K9 1392 aa13.24□□□□□ -0.29
USP28-203ENST00000537490 NEURL4Q96JN8 1562 aa13.24□□□□□ -0.29
USP28-203ENST00000537490 UGGT1Q9NYU2 1555 aa13.24□□□□□ -0.29
USP28-203ENST00000537490 DUOX2Q9NRD8 1548 aa13.23□□□□□ -0.29
USP28-203ENST00000537490 MROH1Q8NDA8 1641 aa13.23□□□□□ -0.29
USP28-203ENST00000537490 ERVK-7P63135 1459 aa13.23□□□□□ -0.29
USP28-203ENST00000537490 EIF2AK4Q9P2K8 1649 aaKnown RBP13.22□□□□□ -0.29
USP28-203ENST00000537490 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP28-203ENST00000537490 CHIC2Q9UKJ5 165 aa13.22□□□□□ -0.29
USP28-203ENST00000537490 SPATA31D1Q6ZQQ2 1576 aa13.22□□□□□ -0.29
USP28-203ENST00000537490 NPHP4O75161 1426 aaPredicted RBP13.22□□□□□ -0.29
USP28-203ENST00000537490 DAPK1P53355 1430 aa13.22□□□□□ -0.29
USP28-203ENST00000537490 FGD6Q6ZV73 1430 aa13.22□□□□□ -0.29
USP28-203ENST00000537490 PTPN23Q9H3S7 1636 aa13.21□□□□□ -0.29
USP28-203ENST00000537490 ILDR2Q71H61 639 aa13.21□□□□□ -0.29
USP28-203ENST00000537490 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.3
USP28-203ENST00000537490 MED14O60244 1454 aa13.2□□□□□ -0.3
USP28-203ENST00000537490 ERBINQ96RT1 1412 aa13.2□□□□□ -0.3
USP28-203ENST00000537490 ZC3H13Q5T200 1668 aaKnown RBP13.19□□□□□ -0.3
USP28-203ENST00000537490 ARHGAP31Q2M1Z3 1444 aa13.18□□□□□ -0.3
USP28-203ENST00000537490 POLR1AO95602 1720 aaPredicted RBP13.18□□□□□ -0.3
USP28-203ENST00000537490 LTKP29376 864 aa13.17□□□□□ -0.3
USP28-203ENST00000537490 CPS1P31327 1500 aa13.17□□□□□ -0.3
USP28-203ENST00000537490 ANKRD30AQ9BXX3 1397 aa13.17□□□□□ -0.3
USP28-203ENST00000537490 CEP152O94986 1710 aa13.16□□□□□ -0.3
USP28-203ENST00000537490 VWDEQ8N2E2 1590 aa13.16□□□□□ -0.3
USP28-203ENST00000537490 TOM1O60784 492 aa13.16□□□□□ -0.3
USP28-203ENST00000537490 PIP4K2BP78356 416 aa13.16□□□□□ -0.3
USP28-203ENST00000537490 DEPDC5O75140 1603 aa13.16□□□□□ -0.3
USP28-203ENST00000537490 SCAF1Q9H7N4 1312 aaKnown RBP13.15□□□□□ -0.3
USP28-203ENST00000537490 CROCC2H7BZ55 1655 aa13.15□□□□□ -0.3
USP28-203ENST00000537490 PRDM15P57071 1507 aaPredicted RBP13.15□□□□□ -0.3
USP28-203ENST00000537490 FAM50AQ14320 339 aaKnown RBP13.15□□□□□ -0.3
USP28-203ENST00000537490 TXNDC2Q86VQ3 553 aa13.15□□□□□ -0.3
USP28-203ENST00000537490 KANK1Q14678 1352 aa13.15□□□□□ -0.3
USP28-203ENST00000537490 HSPA1LP34931 641 aa13.14□□□□□ -0.31
USP28-203ENST00000537490 CFAP65Q6ZU64 1925 aaKnown RBP13.13□□□□□ -0.31
USP28-203ENST00000537490 IDI1Q13907 227 aa13.13□□□□□ -0.31
USP28-203ENST00000537490 SCAF11Q99590 1463 aaKnown RBP13.12□□□□□ -0.31
USP28-203ENST00000537490 ARHGAP23Q9P227 1491 aa13.12□□□□□ -0.31
USP28-203ENST00000537490 FOXD1Q16676 465 aa13.12□□□□□ -0.31
USP28-203ENST00000537490 IQGAP1P46940 1657 aa13.12□□□□□ -0.31
USP28-203ENST00000537490 UBR1Q8IWV7 1749 aa13.11□□□□□ -0.31
USP28-203ENST00000537490 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
USP28-203ENST00000537490 EID1Q9Y6B2 187 aa13.11□□□□□ -0.31
USP28-203ENST00000537490 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
USP28-203ENST00000537490 SLIT1O75093 1534 aa13.1□□□□□ -0.31
USP28-203ENST00000537490 LMTK2Q8IWU2 1503 aa13.1□□□□□ -0.31
USP28-203ENST00000537490 TMEM2Q9UHN6 1383 aa13.09□□□□□ -0.31
USP28-203ENST00000537490 LRRC7Q96NW7 1537 aa13.09□□□□□ -0.31
USP28-203ENST00000537490 SOCS7O14512 581 aa13.09□□□□□ -0.31
USP28-203ENST00000537490 NOS1P29475 1434 aa13.08□□□□□ -0.32
USP28-203ENST00000537490 ALKQ9UM73 1620 aa13.08□□□□□ -0.32
USP28-203ENST00000537490 STRCP1A6NGW2 1772 aa13.07□□□□□ -0.32
USP28-203ENST00000537490 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
USP28-203ENST00000537490 PIK3C2BO00750 1634 aa13.07□□□□□ -0.32
USP28-203ENST00000537490 SLC52A1Q9NWF4 448 aa13.05□□□□□ -0.32
USP28-203ENST00000537490 SYNMO15061 1565 aa13.05□□□□□ -0.32
USP28-203ENST00000537490 EFCAB6Q5THR3 1501 aa13.04□□□□□ -0.32
USP28-203ENST00000537490 SLC26A8Q96RN1 970 aa13.04□□□□□ -0.32
USP28-203ENST00000537490 PPARGC1BQ86YN6 1023 aaKnown RBP13.03□□□□□ -0.32
USP28-203ENST00000537490 KCNA6P17658 529 aa13.02□□□□□ -0.33
USP28-203ENST00000537490 RPRD2Q5VT52 1461 aaKnown RBP13□□□□□ -0.33
USP28-203ENST00000537490 ITGAEP38570 1179 aa13□□□□□ -0.33
USP28-203ENST00000537490 RBM33Q96EV2 1170 aaKnown RBP13□□□□□ -0.33
USP28-203ENST00000537490 TET3O43151 1660 aa12.99□□□□□ -0.33
USP28-203ENST00000537490 ADGRB3O60242 1522 aa12.99□□□□□ -0.33
USP28-203ENST00000537490 TMEM94Q12767 1356 aa12.99□□□□□ -0.33
USP28-203ENST00000537490 ROCK1Q13464 1354 aa12.99□□□□□ -0.33
USP28-203ENST00000537490 PROSER2Q86WR7 435 aaPredicted RBP12.99□□□□□ -0.33
USP28-203ENST00000537490 BCANQ96GW7 911 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms