RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.97
USP28-203ENST00000537490 ABCC9O60706 1549 aa18.96■□□□□ 0.63
USP28-203ENST00000537490 CCDC180Q9P1Z9 1646 aa18.86■□□□□ 0.61
USP28-203ENST00000537490 RB1CC1Q8TDY2 1594 aa17.99■□□□□ 0.47
USP28-203ENST00000537490 DCAF8L2P0C7V8 631 aa17.92■□□□□ 0.46
USP28-203ENST00000537490 NACADO15069 1562 aa17.88■□□□□ 0.45
USP28-203ENST00000537490 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
USP28-203ENST00000537490 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
USP28-203ENST00000537490 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
USP28-203ENST00000537490 UNC13AQ9UPW8 1703 aa17.52■□□□□ 0.4
USP28-203ENST00000537490 ZCCHC6Q5VYS8 1495 aaKnown RBP17.51■□□□□ 0.39
USP28-203ENST00000537490 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
USP28-203ENST00000537490 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
USP28-203ENST00000537490 SCRIBQ14160 1630 aa17.25■□□□□ 0.35
USP28-203ENST00000537490 SHROOM4Q9ULL8 1493 aa17.21■□□□□ 0.35
USP28-203ENST00000537490 CC2D2AQ9P2K1 1620 aa17.08■□□□□ 0.32
USP28-203ENST00000537490 CECR2Q9BXF3 1484 aa17.06■□□□□ 0.32
USP28-203ENST00000537490 EIF4G1Q04637 1599 aaKnown RBP17.05■□□□□ 0.32
USP28-203ENST00000537490 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
USP28-203ENST00000537490 ATAD2BQ9ULI0 1458 aa16.51■□□□□ 0.23
USP28-203ENST00000537490 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
USP28-203ENST00000537490 AEBP2Q6ZN18 517 aaPredicted RBP16.41■□□□□ 0.22
USP28-203ENST00000537490 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
USP28-203ENST00000537490 HMGXB3Q12766 1538 aa16.38■□□□□ 0.21
USP28-203ENST00000537490 BAZ1AQ9NRL2 1556 aaPredicted RBP16.38■□□□□ 0.21
USP28-203ENST00000537490 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
USP28-203ENST00000537490 DNAJC5Q9H3Z4 198 aa16.33■□□□□ 0.2
USP28-203ENST00000537490 BAZ1BQ9UIG0 1483 aaKnown RBP16.32■□□□□ 0.2
USP28-203ENST00000537490 MROH2BQ7Z745 1585 aa16.3■□□□□ 0.2
USP28-203ENST00000537490 NESP48681 1621 aa16.3■□□□□ 0.2
USP28-203ENST00000537490 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
USP28-203ENST00000537490 CUX2O14529 1486 aa16.29■□□□□ 0.2
USP28-203ENST00000537490 LAMC3Q9Y6N6 1575 aa16.12■□□□□ 0.17
USP28-203ENST00000537490 WIZO95785 1651 aa16.08■□□□□ 0.16
USP28-203ENST00000537490 CADPSQ9ULU8 1353 aa16.07■□□□□ 0.16
USP28-203ENST00000537490 PDS5BQ9NTI5 1447 aa16.07■□□□□ 0.16
USP28-203ENST00000537490 THOC2Q8NI27 1593 aaKnown RBP16.06■□□□□ 0.16
USP28-203ENST00000537490 KIF21AQ7Z4S6 1674 aa16■□□□□ 0.15
USP28-203ENST00000537490 RSF1Q96T23 1441 aaPredicted RBP15.99■□□□□ 0.15
USP28-203ENST00000537490 MRC2Q9UBG0 1479 aa15.92■□□□□ 0.14
USP28-203ENST00000537490 CFTRP13569 1480 aa15.87■□□□□ 0.13
USP28-203ENST00000537490 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
USP28-203ENST00000537490 FANCD2Q9BXW9 1451 aa15.86■□□□□ 0.13
USP28-203ENST00000537490 WDR62O43379 1518 aa15.86■□□□□ 0.13
USP28-203ENST00000537490 CEP164Q9UPV0 1460 aa15.85■□□□□ 0.13
USP28-203ENST00000537490 CHIC1Q5VXU3 224 aa15.8■□□□□ 0.12
USP28-203ENST00000537490 CCDC88BA6NC98 1476 aa15.74■□□□□ 0.11
USP28-203ENST00000537490 URB2Q14146 1524 aaKnown RBP15.73■□□□□ 0.11
USP28-203ENST00000537490 TRIM41Q8WV44 630 aa15.63■□□□□ 0.09
USP28-203ENST00000537490 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
USP28-203ENST00000537490 PRDM2Q13029 1718 aa15.57■□□□□ 0.08
USP28-203ENST00000537490 TOPBP1Q92547 1522 aa15.56■□□□□ 0.08
USP28-203ENST00000537490 ZNF608Q9ULD9 1512 aaPredicted RBP15.55■□□□□ 0.08
USP28-203ENST00000537490 IFT140Q96RY7 1462 aa15.55■□□□□ 0.08
USP28-203ENST00000537490 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
USP28-203ENST00000537490 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
USP28-203ENST00000537490 AQRO60306 1485 aaKnown RBP eCLIP15.43■□□□□ 0.06
USP28-203ENST00000537490 POLA1P09884 1462 aaPredicted RBP15.4■□□□□ 0.06
USP28-203ENST00000537490 EIF4G3O43432 1585 aaKnown RBP15.4■□□□□ 0.06
USP28-203ENST00000537490 TARBP1Q13395 1621 aaKnown RBP15.39■□□□□ 0.05
USP28-203ENST00000537490 RAD54L2Q9Y4B4 1467 aa15.38■□□□□ 0.05
USP28-203ENST00000537490 SOGA1O94964 1423 aa15.36■□□□□ 0.05
USP28-203ENST00000537490 SUPT5HO00267 1087 aaKnown RBP15.35■□□□□ 0.05
USP28-203ENST00000537490 TDRD9Q8NDG6 1382 aaKnown RBP15.35■□□□□ 0.05
USP28-203ENST00000537490 FBLN2P98095 1184 aa15.34■□□□□ 0.05
USP28-203ENST00000537490 RIMBP3CA6NJZ7 1639 aa15.33■□□□□ 0.04
USP28-203ENST00000537490 RIMBP3BA6NNM3 1639 aa15.33■□□□□ 0.04
USP28-203ENST00000537490 RIMBP3Q9UFD9 1639 aa15.33■□□□□ 0.04
USP28-203ENST00000537490 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
USP28-203ENST00000537490 ARHGEF11O15085 1522 aa15.31■□□□□ 0.04
USP28-203ENST00000537490 CUX1P39880 1505 aa15.3■□□□□ 0.04
USP28-203ENST00000537490 CYB5RLQ6IPT4 315 aa15.27■□□□□ 0.04
USP28-203ENST00000537490 CHD1O14646 1710 aa15.26■□□□□ 0.03
USP28-203ENST00000537490 SNAPC4Q5SXM2 1469 aa15.23■□□□□ 0.03
USP28-203ENST00000537490 CHMP7Q8WUX9 453 aaPredicted RBP15.22■□□□□ 0.03
USP28-203ENST00000537490 GRIN2BQ13224 1484 aa15.2■□□□□ 0.02
USP28-203ENST00000537490 WDR97A6NE52 1622 aa15.19■□□□□ 0.02
USP28-203ENST00000537490 ARAP1Q96P48 1450 aa15.18■□□□□ 0.02
USP28-203ENST00000537490 MAGI1Q96QZ7 1491 aaPredicted RBP15.17■□□□□ 0.02
USP28-203ENST00000537490 GAPVD1Q14C86 1478 aa15.15■□□□□ 0.02
USP28-203ENST00000537490 SYNJ2O15056 1496 aa15.14■□□□□ 0.01
USP28-203ENST00000537490 ABCA10Q8WWZ4 1543 aa15.13■□□□□ 0.01
USP28-203ENST00000537490 CLASP1Q7Z460 1538 aa15.12■□□□□ 0.01
USP28-203ENST00000537490 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
USP28-203ENST00000537490 WRNQ14191 1432 aaPredicted RBP eCLIP15.09■□□□□ 0.01
USP28-203ENST00000537490 ABCA5Q8WWZ7 1642 aa15.07■□□□□ 0
USP28-203ENST00000537490 TRHP20396 242 aaPredicted RBP15.07■□□□□ 0
USP28-203ENST00000537490 PBRM1Q86U86 1689 aa15.06■□□□□ 0
USP28-203ENST00000537490 TOP2BQ02880 1626 aa15.03■□□□□ -0
USP28-203ENST00000537490 BIVM-ERCC5R4GMW8 1640 aa15.01□□□□□ -0.01
USP28-203ENST00000537490 GRIN2AQ12879 1464 aa15□□□□□ -0.01
USP28-203ENST00000537490 FHAD1B1AJZ9 1412 aa14.97□□□□□ -0.01
USP28-203ENST00000537490 ADAMTS12P58397 1594 aa14.96□□□□□ -0.01
USP28-203ENST00000537490 NUP160Q12769 1436 aa14.96□□□□□ -0.01
USP28-203ENST00000537490 CEP170Q5SW79 1584 aa14.94□□□□□ -0.02
USP28-203ENST00000537490 ERCC6L2Q5T890 1561 aa14.93□□□□□ -0.02
USP28-203ENST00000537490 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
USP28-203ENST00000537490 JPH4Q96JJ6 628 aa14.86□□□□□ -0.03
USP28-203ENST00000537490 SHROOM2Q13796 1616 aa14.84□□□□□ -0.03
USP28-203ENST00000537490 PRG4Q92954 1404 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms